Wall clock time and date at job start Mon Mar 30 2020 09:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00179 * 2 1 4 4 C 1.52997 * 109.47348 * 124.99416 * 3 2 1 5 5 H 1.08993 * 109.47194 * 304.99609 * 4 3 2 6 6 C 1.52999 * 109.46991 * 65.00452 * 4 3 2 7 7 C 1.52997 * 109.46991 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47131 * 299.99311 * 7 6 4 9 9 C 1.53002 * 109.46972 * 60.00459 * 8 7 6 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 7 11 11 H 1.09001 * 109.47289 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47254 * 300.00227 * 10 9 8 13 13 C 1.46902 * 110.99869 * 274.99746 * 12 10 9 14 14 C 1.52998 * 109.47056 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.47136 * 65.00234 * 14 13 12 16 16 C 1.42901 * 114.00210 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47129 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99857 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99931 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47318 * 59.99859 * 21 19 17 23 23 H 1.48502 * 109.47326 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47325 * 299.99855 * 21 19 17 25 25 H 1.08002 * 120.00129 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00044 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00129 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46894 * 4.99328 * 3 2 1 29 29 H 1.09001 * 109.46755 * 244.99952 * 3 2 1 30 30 H 1.09002 * 109.46719 * 299.99711 * 6 4 3 31 31 H 1.08993 * 109.47839 * 59.99553 * 6 4 3 32 32 H 1.09001 * 109.47289 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47611 * 59.99933 * 7 6 4 34 34 H 1.08996 * 109.47452 * 300.00000 * 8 7 6 35 35 H 1.09000 * 109.47054 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47070 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47407 * 59.99513 * 9 8 7 38 38 H 1.00896 * 111.00381 * 38.95478 * 12 10 9 39 39 H 1.08993 * 109.47122 * 300.00280 * 13 12 10 40 40 H 1.09003 * 109.47035 * 60.00136 * 13 12 10 41 41 H 1.08998 * 109.47090 * 184.99810 * 14 13 12 42 42 H 1.08998 * 109.47451 * 305.00594 * 14 13 12 43 43 H 1.09002 * 109.46772 * 300.00142 * 16 15 14 44 44 H 1.08999 * 109.46857 * 59.99890 * 16 15 14 45 45 H 0.97004 * 119.99821 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 1 2.4881 1.1471 2.1060 6 6 4.0998 0.2510 0.9922 7 6 5.0709 0.2787 2.1742 8 6 5.7451 1.6501 2.2484 9 6 4.6802 2.7323 2.4378 10 6 3.7092 2.7046 1.2558 11 1 2.9508 3.4759 1.3905 12 7 4.4465 2.9558 0.0104 13 6 4.5987 4.3970 -0.2298 14 6 5.3703 4.6183 -1.5323 15 8 4.5983 4.1314 -2.6318 16 6 5.2316 4.2914 -3.9028 17 6 4.3339 3.7462 -4.9836 18 1 3.3754 3.3206 -4.7257 19 6 4.7358 3.7918 -6.3017 20 7 5.9027 4.3106 -6.6157 21 14 3.6228 3.1168 -7.6414 22 1 2.3344 3.8553 -7.6334 23 1 4.2809 3.2829 -8.9622 24 1 3.3683 1.6749 -7.3936 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0894 29 1 2.6213 1.4025 -0.9314 30 1 3.6195 -0.7261 0.9398 31 1 4.6466 0.4371 0.0679 32 1 5.8293 -0.4925 2.0395 33 1 4.5238 0.0922 3.0984 34 1 6.2922 1.8365 1.3243 35 1 6.4372 1.6696 3.0902 36 1 5.1606 3.7093 2.4911 37 1 4.1331 2.5459 3.3619 38 1 5.3437 2.4944 0.0219 39 1 3.6143 4.8584 -0.3073 40 1 5.1469 4.8473 0.5978 41 1 5.5606 5.6833 -1.6654 42 1 6.3184 4.0824 -1.4886 43 1 5.4187 5.3497 -4.0848 44 1 6.1771 3.7490 -3.9084 45 1 6.1857 4.3424 -7.5430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595603877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:01 Heat of formation + Delta-G solvation = -73.484321 kcal Electronic energy + Delta-G solvation = -21024.326381 eV Core-core repulsion = 18040.269276 eV Total energy + Delta-G solvation = -2984.057104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58621 -38.55237 -36.12356 -35.30655 -34.67385 -31.91154 -31.36308 -29.50599 -28.04405 -26.44651 -24.46977 -23.47572 -23.09409 -22.22755 -20.30821 -19.80477 -18.62259 -17.57012 -16.97402 -16.72111 -16.32098 -16.19288 -15.82315 -15.45838 -14.98139 -14.79334 -14.44641 -14.29294 -14.04922 -13.76313 -13.52718 -13.19544 -13.01255 -12.83506 -12.77626 -12.72814 -12.46735 -12.30516 -12.14131 -11.92156 -11.84836 -11.67245 -11.30031 -11.22600 -10.94469 -10.84178 -10.76771 -10.16764 -10.11030 -9.06368 -8.30589 -6.42231 1.39603 1.44526 1.50187 1.52843 2.35839 3.03060 3.23878 3.32849 3.75217 3.89979 3.95176 4.19399 4.22842 4.27909 4.30016 4.38480 4.53760 4.55850 4.61030 4.62414 4.65851 4.72368 4.77127 4.81084 4.86862 4.90430 5.03942 5.09491 5.12711 5.20571 5.22928 5.24825 5.33239 5.37363 5.45009 5.54659 5.56913 5.66961 5.85178 5.99296 6.01743 6.27173 6.56129 6.62725 6.88764 7.29965 8.81617 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.004647 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.723851 B = 6023.656446 C = 7095.038020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.080 4.080 4 C -0.057 4.057 5 H 0.078 0.922 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.142 4.142 10 C 0.091 3.909 11 H 0.072 0.928 12 N -0.684 5.684 13 C 0.077 3.923 14 C 0.056 3.944 15 O -0.393 6.393 16 C 0.209 3.791 17 C -0.544 4.544 18 H 0.059 0.941 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.980 3.020 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.340 0.660 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.036 0.964 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -6.663 20.704 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.076 4.076 5 H 0.096 0.904 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.181 4.181 10 C -0.019 4.019 11 H 0.090 0.910 12 N -0.318 5.318 13 C -0.052 4.052 14 C -0.022 4.022 15 O -0.313 6.313 16 C 0.134 3.866 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.571 5.571 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.192 1.192 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.000 1.000 44 H 0.000 1.000 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.522 -6.749 20.174 21.748 hybrid contribution 0.816 0.355 -0.442 0.994 sum -3.706 -6.394 19.732 21.071 Atomic orbital electron populations 1.23943 0.95939 1.02132 1.02249 1.23137 0.96234 0.98804 0.99010 1.20619 0.97390 0.94357 0.99381 1.20990 0.95038 0.94135 0.97464 0.90367 1.21564 0.96757 0.98408 0.98414 1.21503 0.98343 0.96792 0.98478 1.21529 0.97755 0.94993 1.01541 1.22137 0.97759 0.98960 0.99289 1.21619 0.95550 0.97326 0.87361 0.91019 1.60442 1.25224 1.09881 1.36224 1.21860 1.00172 0.89739 0.93475 1.22585 0.94377 0.97229 0.87974 1.87915 1.45263 1.83076 1.15047 1.19774 0.92425 0.93502 0.80873 1.21337 1.04391 1.40738 0.91746 0.92306 1.25927 0.97048 0.95201 1.00917 1.70064 1.21506 1.45770 1.19741 0.85278 0.78430 0.79098 0.76873 1.19049 1.19836 1.19150 0.88916 0.87483 0.86985 0.92943 0.92237 0.91778 0.93157 0.91798 0.91139 0.93110 0.90868 0.92035 0.90282 0.83918 0.91267 0.91845 0.93760 0.94596 1.00005 1.00030 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.42 14.32 67.79 0.97 -3.45 16 2 C -0.15 -3.60 9.02 25.65 0.23 -3.36 16 3 C -0.08 -2.11 4.90 29.85 0.15 -1.97 16 4 C -0.06 -1.23 2.00 -10.79 -0.02 -1.25 16 5 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 6 C -0.11 -2.36 4.78 30.59 0.15 -2.22 16 7 C -0.11 -1.89 5.92 30.59 0.18 -1.71 16 8 C -0.12 -2.03 5.67 30.59 0.17 -1.85 16 9 C -0.14 -2.43 5.52 30.59 0.17 -2.26 16 10 C 0.09 1.99 2.30 44.92 0.10 2.10 16 11 H 0.07 1.61 7.80 -2.39 -0.02 1.59 16 12 N -0.68 -19.20 5.05 -491.57 -2.48 -21.68 16 13 C 0.08 2.22 5.87 86.30 0.51 2.73 16 14 C 0.06 2.10 6.22 71.98 0.45 2.55 16 15 O -0.39 -19.87 10.27 -148.98 -1.53 -21.40 16 16 C 0.21 12.17 5.69 71.24 0.41 12.58 16 17 C -0.54 -33.48 9.43 25.60 0.24 -33.24 16 18 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 21 Si 0.98 45.53 29.54 68.60 2.03 47.56 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H 0.09 1.98 7.84 -2.91 -0.02 1.96 16 26 H 0.11 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.11 2.40 6.96 -2.91 -0.02 2.38 16 28 H 0.05 1.42 7.79 -2.39 -0.02 1.40 16 29 H 0.06 2.02 7.77 -2.39 -0.02 2.00 16 30 H 0.06 1.25 6.73 -2.39 -0.02 1.24 16 31 H 0.05 1.29 7.21 -2.39 -0.02 1.27 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.99 6.26 -2.39 -0.01 0.97 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.03 7.46 -2.39 -0.02 1.02 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.34 9.39 5.56 -89.70 -0.50 8.89 16 39 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 40 H 0.06 1.45 7.44 -2.39 -0.02 1.43 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 44 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -66.90 350.88 2.89 -64.01 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.43 Total: 18.82 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 4.16 Total: -30.45 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.20 Total: -78.53 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -1.53 Total: -21.40 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.90 2.89 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.479 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds