Wall clock time and date at job start Mon Mar 30 2020 09:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00103 * 2 1 4 4 C 1.52999 * 109.47062 * 124.99949 * 3 2 1 5 5 H 1.08995 * 109.47592 * 55.00315 * 4 3 2 6 6 C 1.53000 * 109.47200 * 295.00126 * 4 3 2 7 7 C 1.52999 * 109.47200 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47087 * 60.00278 * 7 6 4 9 9 C 1.53005 * 109.47200 * 299.99919 * 8 7 6 10 10 C 1.52997 * 109.47087 * 175.00405 * 4 3 2 11 11 H 1.09000 * 109.47534 * 59.99998 * 10 4 3 12 12 N 1.46900 * 109.47072 * 300.00006 * 10 4 3 13 13 C 1.46905 * 111.00154 * 155.00206 * 12 10 4 14 14 C 1.52997 * 109.47150 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47319 * 64.99949 * 14 13 12 16 16 C 1.42902 * 114.00186 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47205 * 179.97438 * 16 15 14 18 18 H 1.08008 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47224 * 59.99769 * 21 19 17 23 23 H 1.48500 * 109.47098 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47074 * 299.99700 * 21 19 17 25 25 H 1.07996 * 120.00277 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99801 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00478 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46871 * 5.00288 * 3 2 1 29 29 H 1.08997 * 109.47548 * 245.00349 * 3 2 1 30 30 H 1.08997 * 109.47421 * 300.00231 * 6 4 3 31 31 H 1.09001 * 109.46809 * 60.00331 * 6 4 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47122 * 300.00414 * 7 6 4 34 34 H 1.09000 * 109.47534 * 59.99998 * 8 7 6 35 35 H 1.09001 * 109.47184 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.46942 * 300.00442 * 9 8 7 37 37 H 1.09001 * 109.47136 * 179.97438 * 9 8 7 38 38 H 1.00895 * 110.99884 * 31.04572 * 12 10 4 39 39 H 1.09001 * 109.47063 * 59.99499 * 13 12 10 40 40 H 1.09004 * 109.46681 * 300.00124 * 13 12 10 41 41 H 1.09002 * 109.47153 * 304.99641 * 14 13 12 42 42 H 1.09001 * 109.46832 * 184.99832 * 14 13 12 43 43 H 1.09001 * 109.46918 * 299.99649 * 16 15 14 44 44 H 1.08999 * 109.46857 * 59.99535 * 16 15 14 45 45 H 0.96998 * 119.99585 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 6 2.2450 1.3218 2.4918 7 6 3.2165 1.3504 3.6735 8 6 4.0685 2.6192 3.6026 9 6 4.8586 2.6306 2.2924 10 6 3.8875 2.6016 1.1111 11 1 3.2399 3.4774 1.1524 12 7 4.6460 2.6125 -0.1469 13 6 4.9893 3.9849 -0.5429 14 6 5.7764 3.9555 -1.8545 15 8 4.9399 3.4581 -2.9009 16 6 5.5824 3.3893 -4.1756 17 6 4.6136 2.8537 -5.1981 18 1 3.6080 2.5916 -4.9040 19 6 5.0113 2.6972 -6.5089 20 7 6.2360 3.0159 -6.8670 21 14 3.8107 2.0326 -7.7763 22 1 2.6337 2.9340 -7.8637 23 1 4.4783 1.9612 -9.1009 24 1 3.3655 0.6748 -7.3721 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.5973 2.1975 2.5332 31 1 1.6377 0.4180 2.5421 32 1 2.6537 1.3419 4.6069 33 1 3.8645 0.4749 3.6323 34 1 3.4205 3.4948 3.6437 35 1 4.7609 2.6394 4.4442 36 1 5.5065 1.7550 2.2513 37 1 5.4652 3.5348 2.2417 38 1 4.1375 2.1411 -0.8798 39 1 5.5968 4.4465 0.2356 40 1 4.0753 4.5625 -0.6808 41 1 6.6442 3.3054 -1.7430 42 1 6.1073 4.9640 -2.1023 43 1 5.9096 4.3860 -4.4717 44 1 6.4459 2.7273 -4.1119 45 1 6.5157 2.9062 -7.7893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595603878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:06 Heat of formation + Delta-G solvation = -61.121405 kcal Electronic energy + Delta-G solvation = -20776.100774 eV Core-core repulsion = 17792.579766 eV Total energy + Delta-G solvation = -2983.521008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.48838 -36.92210 -35.01076 -34.65029 -32.67487 -31.04609 -30.19377 -27.68476 -26.49025 -25.77953 -22.53057 -22.20497 -21.38310 -20.99723 -19.87050 -19.53110 -16.46835 -16.01041 -15.66646 -15.39308 -15.13723 -14.73949 -14.46149 -14.14655 -14.11450 -13.97124 -13.29517 -13.21480 -12.71662 -12.48287 -12.25651 -12.09455 -11.73166 -11.62397 -11.34475 -11.17079 -11.10238 -10.89322 -10.81401 -10.76112 -10.69163 -10.48747 -10.30780 -10.03997 -9.90635 -9.23117 -9.10749 -8.80720 -8.15859 -8.13310 -6.09814 -4.11688 2.29807 3.32556 3.35302 3.39032 4.27696 4.35742 4.57007 4.64411 4.84271 4.89552 4.96497 5.12481 5.18523 5.26583 5.27876 5.39502 5.42557 5.44956 5.48014 5.56751 5.66798 5.70264 5.77446 5.85937 5.91067 5.96743 6.00759 6.06261 6.11501 6.15845 6.22217 6.23509 6.29292 6.36921 6.46453 6.63766 6.78418 7.12971 7.32670 7.45546 7.74043 7.79689 8.16581 8.59259 9.01130 9.53126 11.01690 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.004211 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.642212 B = 6647.136424 C = 7926.025441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.100 4.100 4 C -0.082 4.082 5 H 0.079 0.921 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.107 4.107 10 C 0.092 3.908 11 H 0.040 0.960 12 N -0.686 5.686 13 C 0.066 3.934 14 C 0.062 3.938 15 O -0.400 6.400 16 C 0.198 3.802 17 C -0.515 4.515 18 H 0.065 0.935 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.356 0.644 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.004 0.996 44 H 0.006 0.994 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 -2.463 20.298 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.101 4.101 5 H 0.098 0.902 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.145 4.145 10 C -0.018 4.018 11 H 0.058 0.942 12 N -0.321 5.321 13 C -0.063 4.063 14 C -0.016 4.016 15 O -0.320 6.320 16 C 0.123 3.877 17 C -0.553 4.553 18 H 0.083 0.917 19 C -0.144 4.144 20 N -0.538 5.538 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.178 0.822 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.024 0.976 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.007 -2.622 20.435 21.461 hybrid contribution -1.036 0.127 -1.190 1.583 sum -7.044 -2.495 19.245 20.645 Atomic orbital electron populations 1.23778 0.95977 1.01510 1.02850 1.22912 0.95903 0.98452 0.98360 1.20945 0.98238 0.95459 0.99133 1.21251 0.96006 0.98637 0.94179 0.90215 1.21563 0.97562 1.01901 0.93760 1.21540 0.97995 0.98258 0.97886 1.21545 0.98638 0.97920 0.97621 1.21519 0.97718 1.02390 0.92846 1.21501 0.93093 0.96453 0.90747 0.94234 1.60547 1.49003 1.16790 1.05802 1.21978 0.98878 0.89784 0.95640 1.22300 0.93945 0.97551 0.87821 1.87778 1.39659 1.85629 1.18897 1.20164 0.93541 0.95562 0.78398 1.21011 0.98854 1.43061 0.92401 0.91702 1.24939 0.95593 0.95597 0.98301 1.69956 1.17164 1.48284 1.18355 0.86413 0.80715 0.79570 0.79878 1.20060 1.21146 1.19987 0.88834 0.88824 0.87446 0.91669 0.89853 0.92267 0.91725 0.92372 0.91956 0.92335 0.92159 0.91304 0.92235 0.82151 0.90824 0.94945 0.93580 0.94264 0.97862 0.97635 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 14.32 29.02 0.42 -1.71 16 2 C -0.14 -1.54 8.50 -36.02 -0.31 -1.85 16 3 C -0.10 -1.20 5.00 -27.88 -0.14 -1.34 16 4 C -0.08 -0.91 1.84 -90.62 -0.17 -1.07 16 5 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.11 -1.04 5.02 -26.73 -0.13 -1.17 16 7 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 8 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 9 C -0.11 -1.15 5.42 -26.75 -0.15 -1.30 16 10 C 0.09 1.12 1.97 -67.74 -0.13 0.98 16 11 H 0.04 0.50 7.80 -51.93 -0.40 0.09 16 12 N -0.69 -10.28 6.31 -106.75 -0.67 -10.95 16 13 C 0.07 1.03 5.90 -3.82 -0.02 1.00 16 14 C 0.06 1.17 6.28 37.16 0.23 1.40 16 15 O -0.40 -9.60 9.85 -35.23 -0.35 -9.94 16 16 C 0.20 5.47 5.69 36.00 0.20 5.68 16 17 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 18 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 21 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.09 0.95 7.84 -52.49 -0.41 0.53 16 26 H 0.09 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.08 1.18 6.03 -51.93 -0.31 0.87 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.60 7.38 -51.93 -0.38 0.21 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 38 H 0.36 5.91 5.66 -39.29 -0.22 5.69 16 39 H 0.07 0.98 7.43 -51.93 -0.39 0.60 16 40 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -30.11 354.22 -9.27 -39.39 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.37 Total: 1.38 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.93 Total: -15.78 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.06 Total: -37.31 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.35 Total: -9.94 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.11 -9.27 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.734 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds