Wall clock time and date at job start Mon Mar 30 2020 09:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00103 * 2 1 4 4 C 1.52999 * 109.47062 * 124.99949 * 3 2 1 5 5 H 1.08995 * 109.47592 * 55.00315 * 4 3 2 6 6 C 1.53000 * 109.47200 * 295.00126 * 4 3 2 7 7 C 1.52999 * 109.47200 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47087 * 60.00278 * 7 6 4 9 9 C 1.53005 * 109.47200 * 299.99919 * 8 7 6 10 10 C 1.52997 * 109.47087 * 175.00405 * 4 3 2 11 11 H 1.09000 * 109.47534 * 59.99998 * 10 4 3 12 12 N 1.46900 * 109.47072 * 300.00006 * 10 4 3 13 13 C 1.46905 * 111.00154 * 155.00206 * 12 10 4 14 14 C 1.52997 * 109.47150 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47319 * 64.99949 * 14 13 12 16 16 C 1.42902 * 114.00186 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47205 * 179.97438 * 16 15 14 18 18 H 1.08008 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00129 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99722 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47224 * 59.99769 * 21 19 17 23 23 H 1.48500 * 109.47098 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47074 * 299.99700 * 21 19 17 25 25 H 1.07996 * 120.00277 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99801 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.00478 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46871 * 5.00288 * 3 2 1 29 29 H 1.08997 * 109.47548 * 245.00349 * 3 2 1 30 30 H 1.08997 * 109.47421 * 300.00231 * 6 4 3 31 31 H 1.09001 * 109.46809 * 60.00331 * 6 4 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47122 * 300.00414 * 7 6 4 34 34 H 1.09000 * 109.47534 * 59.99998 * 8 7 6 35 35 H 1.09001 * 109.47184 * 180.02562 * 8 7 6 36 36 H 1.09000 * 109.46942 * 300.00442 * 9 8 7 37 37 H 1.09001 * 109.47136 * 179.97438 * 9 8 7 38 38 H 1.00895 * 110.99884 * 31.04572 * 12 10 4 39 39 H 1.09001 * 109.47063 * 59.99499 * 13 12 10 40 40 H 1.09004 * 109.46681 * 300.00124 * 13 12 10 41 41 H 1.09002 * 109.47153 * 304.99641 * 14 13 12 42 42 H 1.09001 * 109.46832 * 184.99832 * 14 13 12 43 43 H 1.09001 * 109.46918 * 299.99649 * 16 15 14 44 44 H 1.08999 * 109.46857 * 59.99535 * 16 15 14 45 45 H 0.96998 * 119.99585 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 6 2.2450 1.3218 2.4918 7 6 3.2165 1.3504 3.6735 8 6 4.0685 2.6192 3.6026 9 6 4.8586 2.6306 2.2924 10 6 3.8875 2.6016 1.1111 11 1 3.2399 3.4774 1.1524 12 7 4.6460 2.6125 -0.1469 13 6 4.9893 3.9849 -0.5429 14 6 5.7764 3.9555 -1.8545 15 8 4.9399 3.4581 -2.9009 16 6 5.5824 3.3893 -4.1756 17 6 4.6136 2.8537 -5.1981 18 1 3.6080 2.5916 -4.9040 19 6 5.0113 2.6972 -6.5089 20 7 6.2360 3.0159 -6.8670 21 14 3.8107 2.0326 -7.7763 22 1 2.6337 2.9340 -7.8637 23 1 4.4783 1.9612 -9.1009 24 1 3.3655 0.6748 -7.3721 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.5973 2.1975 2.5332 31 1 1.6377 0.4180 2.5421 32 1 2.6537 1.3419 4.6069 33 1 3.8645 0.4749 3.6323 34 1 3.4205 3.4948 3.6437 35 1 4.7609 2.6394 4.4442 36 1 5.5065 1.7550 2.2513 37 1 5.4652 3.5348 2.2417 38 1 4.1375 2.1411 -0.8798 39 1 5.5968 4.4465 0.2356 40 1 4.0753 4.5625 -0.6808 41 1 6.6442 3.3054 -1.7430 42 1 6.1073 4.9640 -2.1023 43 1 5.9096 4.3860 -4.4717 44 1 6.4459 2.7273 -4.1119 45 1 6.5157 2.9062 -7.7893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595603878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:05 Heat of formation + Delta-G solvation = -78.664326 kcal Electronic energy + Delta-G solvation = -20776.861492 eV Core-core repulsion = 17792.579766 eV Total energy + Delta-G solvation = -2984.281726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42910 -38.68924 -36.04786 -35.75906 -34.82061 -31.96180 -31.35396 -29.43803 -28.01599 -26.73305 -24.54867 -23.49033 -22.30287 -22.10617 -20.77068 -20.39472 -18.64597 -17.57618 -16.96138 -16.80190 -16.41619 -16.24863 -15.59883 -15.45822 -15.15310 -15.12058 -14.76269 -14.15997 -14.03134 -13.76711 -13.51508 -13.15841 -13.09404 -12.93386 -12.80405 -12.61478 -12.57864 -12.33861 -12.05374 -11.94003 -11.89734 -11.71065 -11.36086 -11.30068 -11.17366 -10.90388 -10.81104 -10.24377 -10.11482 -9.31718 -8.32725 -6.45379 1.39075 1.43681 1.43825 1.52222 2.33770 3.01141 3.15809 3.22053 3.67576 3.79199 3.96568 4.10263 4.20627 4.26004 4.34425 4.36750 4.42291 4.52213 4.56111 4.59155 4.63680 4.65198 4.76383 4.77106 4.82733 4.92914 4.96214 5.02810 5.09065 5.14006 5.16888 5.24716 5.33754 5.34381 5.37101 5.42761 5.53495 5.60271 5.77258 5.91752 5.94729 6.19200 6.45423 6.52115 6.80221 7.26521 8.79527 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.004211 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.642212 B = 6647.136424 C = 7926.025441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.075 4.075 5 H 0.071 0.929 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.115 4.115 9 C -0.104 4.104 10 C 0.092 3.908 11 H 0.038 0.962 12 N -0.696 5.696 13 C 0.077 3.923 14 C 0.054 3.946 15 O -0.408 6.408 16 C 0.212 3.788 17 C -0.548 4.548 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.265 1.265 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.343 0.657 39 H 0.101 0.899 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.048 0.952 43 H -0.015 1.015 44 H -0.016 1.016 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 -2.899 21.300 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.094 4.094 5 H 0.089 0.911 6 C -0.142 4.142 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.142 4.142 10 C -0.017 4.017 11 H 0.056 0.944 12 N -0.330 5.330 13 C -0.053 4.053 14 C -0.023 4.023 15 O -0.328 6.328 16 C 0.137 3.863 17 C -0.586 4.586 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.570 5.570 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.190 1.190 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.370 -3.048 21.475 22.908 hybrid contribution -0.571 0.291 -1.445 1.581 sum -7.941 -2.757 20.029 21.722 Atomic orbital electron populations 1.23953 0.95698 1.02383 1.01240 1.22915 0.96315 0.98080 0.99812 1.20871 0.98176 0.96097 0.98285 1.21191 0.95682 0.97637 0.94912 0.91095 1.21516 0.97552 1.02183 0.92963 1.21538 0.97832 0.98014 0.98083 1.21523 0.98748 0.98267 0.96741 1.21500 0.97478 1.01940 0.93259 1.21596 0.93368 0.96910 0.89820 0.94407 1.60620 1.49644 1.16235 1.06481 1.21924 0.98687 0.90376 0.94270 1.22604 0.94082 0.97601 0.87990 1.87748 1.40495 1.86082 1.18512 1.19788 0.92732 0.93759 0.80058 1.21347 0.99142 1.44412 0.93691 0.91985 1.25955 0.97595 0.95219 1.00365 1.70068 1.19066 1.48580 1.19281 0.85251 0.78241 0.79154 0.76877 1.18997 1.19947 1.18993 0.88589 0.87310 0.87108 0.91797 0.92591 0.92126 0.91270 0.90761 0.92058 0.91950 0.90849 0.92139 0.92316 0.83532 0.88048 0.95211 0.93917 0.93415 0.99746 0.99807 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.15 -3.34 8.50 25.65 0.22 -3.13 16 3 C -0.10 -2.35 5.00 29.85 0.15 -2.20 16 4 C -0.08 -1.64 1.84 -10.79 -0.02 -1.66 16 5 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.10 -1.80 5.02 30.59 0.15 -1.64 16 7 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 8 C -0.11 -1.79 5.92 30.59 0.18 -1.61 16 9 C -0.10 -2.10 5.42 30.58 0.17 -1.94 16 10 C 0.09 2.19 1.97 44.90 0.09 2.28 16 11 H 0.04 0.92 7.80 -2.39 -0.02 0.90 16 12 N -0.70 -21.00 6.31 -491.65 -3.10 -24.10 16 13 C 0.08 2.34 5.90 86.30 0.51 2.85 16 14 C 0.05 2.10 6.28 71.98 0.45 2.55 16 15 O -0.41 -20.22 9.85 -148.98 -1.47 -21.69 16 16 C 0.21 12.16 5.69 71.24 0.41 12.57 16 17 C -0.55 -33.09 9.43 25.60 0.24 -32.84 16 18 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 19 C 0.01 0.42 5.46 84.65 0.46 0.88 16 20 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 21 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.10 1.81 7.84 -2.91 -0.02 1.79 16 26 H 0.11 1.78 8.06 -2.91 -0.02 1.75 16 27 H 0.11 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.06 1.52 7.79 -2.39 -0.02 1.50 16 29 H 0.06 1.66 6.03 -2.39 -0.01 1.65 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.15 7.38 -2.39 -0.02 1.13 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 38 H 0.34 11.83 5.66 -89.70 -0.51 11.33 16 39 H 0.10 2.55 7.43 -2.39 -0.02 2.53 16 40 H 0.03 0.93 8.06 -2.39 -0.02 0.91 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -64.77 354.22 2.31 -62.46 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.41 Total: 21.24 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 4.16 Total: -28.30 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.82 Total: -80.49 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.47 Total: -21.69 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.77 2.31 -62.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595603878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.208 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds