Wall clock time and date at job start Mon Mar 30 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46928 * 175.00180 * 4 3 2 6 6 C 1.53001 * 109.46928 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47174 * 300.00023 * 6 5 4 8 8 N 1.46496 * 109.46826 * 180.02562 * 7 6 5 9 9 C 1.34785 * 119.99595 * 154.99717 * 8 7 6 10 10 O 1.21278 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.50695 * 119.99699 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47719 * 300.00122 * 11 9 8 13 13 C 1.53000 * 109.47409 * 60.00300 * 11 9 8 14 14 C 1.50707 * 109.46810 * 180.02562 * 11 9 8 15 15 H 1.07998 * 120.00096 * 324.94158 * 14 11 9 16 16 C 1.37880 * 119.99700 * 144.94895 * 14 11 9 17 17 N 1.31520 * 119.99654 * 175.17311 * 16 14 11 18 18 Si 1.86797 * 120.00257 * 355.16743 * 16 14 11 19 19 H 1.48503 * 109.47240 * 274.88403 * 18 16 14 20 20 H 1.48500 * 109.46883 * 34.88602 * 18 16 14 21 21 H 1.48497 * 109.46908 * 154.88318 * 18 16 14 22 22 C 1.52993 * 109.46928 * 59.99724 * 7 6 5 23 23 C 1.52999 * 109.46871 * 294.99907 * 4 3 2 24 24 H 1.09000 * 109.46916 * 59.99969 * 1 2 3 25 25 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46736 * 300.00412 * 1 2 3 27 27 H 1.09001 * 109.47298 * 240.00075 * 2 1 3 28 28 H 1.09000 * 109.46916 * 120.00030 * 2 1 3 29 29 H 1.09001 * 109.46953 * 59.99864 * 3 2 1 30 30 H 1.09000 * 109.47230 * 299.99838 * 3 2 1 31 31 H 1.09001 * 109.47174 * 54.99558 * 4 3 2 32 32 H 1.08996 * 109.47290 * 59.99882 * 5 4 3 33 33 H 1.08996 * 109.46841 * 299.99488 * 5 4 3 34 34 H 1.08998 * 109.47209 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47174 * 59.99378 * 6 5 4 36 36 H 1.09001 * 109.46543 * 299.99742 * 7 6 5 37 37 H 0.96997 * 120.00497 * 334.99709 * 8 7 6 38 38 H 1.09005 * 109.46601 * 54.87146 * 13 11 9 39 39 H 1.08995 * 109.47670 * 174.87158 * 13 11 9 40 40 H 1.08995 * 109.47091 * 294.87892 * 13 11 9 41 41 H 0.96998 * 119.99707 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47495 * 60.00600 * 22 7 6 43 43 H 1.09005 * 109.46683 * 179.97438 * 22 7 6 44 44 H 1.08996 * 109.47290 * 300.00083 * 23 4 3 45 45 H 1.09007 * 109.47412 * 60.00130 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8795 -0.1250 6 6 5.6101 2.8796 -0.1237 7 6 6.1190 2.2703 1.1843 8 7 7.5840 2.2710 1.1857 9 6 8.2567 2.2714 2.3536 10 8 7.6492 2.2709 3.4033 11 6 9.7636 2.2715 2.3551 12 1 10.1276 1.3814 1.8420 13 6 10.2744 3.5205 1.6340 14 6 10.2645 2.2715 3.7765 15 1 9.7219 2.8086 4.5403 16 6 11.4156 1.5857 4.1017 17 7 11.9051 1.6630 5.3200 18 14 12.2799 0.5469 2.8121 19 1 11.6615 -0.8025 2.7676 20 1 12.1474 1.1963 1.4832 21 1 13.7180 0.4211 3.1603 22 6 5.6089 0.8334 1.3099 23 6 4.0794 0.8331 1.3083 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.8529 -0.8409 32 1 3.7164 3.4691 0.7165 33 1 3.7172 3.3136 -1.0566 34 1 5.9734 3.9033 -0.2137 35 1 5.9741 2.2898 -0.9650 36 1 5.7549 2.8600 2.0255 37 1 8.0698 2.2710 0.3462 38 1 9.8374 4.4083 2.0914 39 1 11.3603 3.5678 1.7139 40 1 9.9889 3.4755 0.5830 41 1 12.7151 1.1809 5.5487 42 1 5.9730 0.2436 0.4686 43 1 5.9719 0.3992 2.2415 44 1 3.7157 1.4227 2.1499 45 1 3.7161 -0.1907 1.3979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596903443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:10 Heat of formation + Delta-G solvation = -87.149560 kcal Electronic energy + Delta-G solvation = -20900.970482 eV Core-core repulsion = 17916.320808 eV Total energy + Delta-G solvation = -2984.649674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64321 -38.17086 -35.34343 -33.59713 -33.06816 -31.29042 -30.77848 -29.61902 -25.83338 -25.21689 -23.06271 -22.76873 -21.55406 -20.54503 -19.98808 -19.03281 -16.99795 -16.33471 -15.56355 -15.39433 -14.87432 -14.43116 -14.25816 -14.03484 -13.84860 -13.42056 -13.31780 -12.87667 -12.53216 -12.41591 -12.34126 -12.24770 -12.02538 -11.73063 -11.35449 -11.29481 -11.13073 -11.11439 -11.03912 -10.77165 -10.73432 -10.56063 -10.30352 -10.13617 -10.02586 -9.78342 -9.12763 -8.61446 -8.50366 -8.38368 -6.03743 -4.02525 3.26366 3.32903 3.35380 3.71165 3.86280 4.40888 4.48284 4.60355 4.72136 4.85359 4.97577 5.08744 5.15886 5.25514 5.28828 5.40819 5.45725 5.49970 5.51218 5.55654 5.65780 5.72314 5.73531 5.81873 5.90846 5.94026 5.98523 6.06628 6.12457 6.15167 6.17247 6.23896 6.28952 6.41847 6.47360 6.53177 6.57302 6.87753 7.15017 7.21539 7.60136 8.24851 8.59262 9.12318 9.24912 9.56324 11.09737 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034658 B = 0.003691 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.702344 B = 7584.144858 C = 7821.926047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.089 4.089 5 C -0.109 4.109 6 C -0.125 4.125 7 C 0.146 3.854 8 N -0.746 5.746 9 C 0.519 3.481 10 O -0.530 6.530 11 C -0.006 4.006 12 H 0.053 0.947 13 C -0.132 4.132 14 C -0.493 4.493 15 H 0.085 0.915 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.265 1.265 21 H -0.287 1.287 22 C -0.130 4.130 23 C -0.111 4.111 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.392 0.608 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.712 -0.899 -15.824 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.107 4.107 5 C -0.147 4.147 6 C -0.163 4.163 7 C 0.040 3.960 8 N -0.400 5.400 9 C 0.307 3.693 10 O -0.404 6.404 11 C -0.028 4.028 12 H 0.071 0.929 13 C -0.190 4.190 14 C -0.531 4.531 15 H 0.103 0.897 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.699 3.301 19 H -0.202 1.202 20 H -0.189 1.189 21 H -0.213 1.213 22 C -0.169 4.169 23 C -0.149 4.149 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.225 0.775 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.982 -0.952 -14.880 23.360 hybrid contribution 0.812 -0.690 -1.024 1.477 sum -17.171 -1.642 -15.904 23.462 Atomic orbital electron populations 1.21783 0.96188 1.01408 1.01642 1.21594 0.95511 0.97212 1.02170 1.21656 0.95058 0.96633 1.01859 1.21218 0.94666 0.96408 0.98402 1.21519 0.94786 0.96559 1.01861 1.21794 0.95913 1.01194 0.97387 1.20808 0.81188 0.96014 0.97951 1.46423 1.05880 1.78366 1.09314 1.21717 0.91550 0.73614 0.82376 1.90571 1.70410 1.47803 1.31657 1.19351 0.87747 0.95951 0.99715 0.92927 1.21933 1.01539 0.99072 0.96493 1.20753 1.08491 1.32323 0.91564 0.89678 1.25035 0.96735 0.96183 0.95183 1.69891 1.22015 1.42628 1.18899 0.86952 0.79086 0.81472 0.82605 1.20169 1.18936 1.21304 1.21927 0.95136 0.97301 1.02527 1.21580 0.95307 1.00829 0.97189 0.92972 0.92968 0.92795 0.92224 0.91643 0.91965 0.92219 0.91299 0.91736 0.91911 0.91472 0.91747 0.90005 0.77488 0.93303 0.92513 0.95522 0.92597 0.92251 0.91205 0.91843 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.11 -0.92 4.68 -26.73 -0.13 -1.05 16 4 C -0.09 -0.81 2.19 -90.62 -0.20 -1.01 16 5 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 6 C -0.12 -1.34 5.39 -26.73 -0.14 -1.49 16 7 C 0.15 2.10 2.45 -67.93 -0.17 1.94 16 8 N -0.75 -12.46 4.98 -53.81 -0.27 -12.73 16 9 C 0.52 11.58 7.11 -10.98 -0.08 11.50 16 10 O -0.53 -14.01 15.43 5.56 0.09 -13.92 16 11 C -0.01 -0.14 2.30 -92.92 -0.21 -0.35 16 12 H 0.05 1.21 5.29 -51.93 -0.27 0.93 16 13 C -0.13 -2.66 9.03 37.16 0.34 -2.33 16 14 C -0.49 -14.35 8.36 -34.44 -0.29 -14.64 16 15 H 0.09 2.82 7.61 -52.49 -0.40 2.42 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.87 21.16 27.00 -169.99 -4.59 16.57 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -5.91 6.81 56.52 0.38 -5.53 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.13 -1.79 5.49 -26.76 -0.15 -1.94 16 23 C -0.11 -1.23 4.96 -26.76 -0.13 -1.36 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 37 H 0.39 5.48 8.12 -40.82 -0.33 5.15 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.03 0.43 7.71 -51.93 -0.40 0.02 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.66 6.56 -51.92 -0.34 0.32 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -32.72 348.65 -8.32 -41.04 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.40 Total: 2.68 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.18 Total: -11.76 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.51 Total: -39.88 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.59 Total: 16.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.72 -8.32 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596903443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.108 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds