Wall clock time and date at job start Mon Mar 30 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46928 * 175.00180 * 4 3 2 6 6 C 1.53001 * 109.46928 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.47174 * 300.00023 * 6 5 4 8 8 N 1.46496 * 109.46826 * 180.02562 * 7 6 5 9 9 C 1.34785 * 119.99595 * 154.99717 * 8 7 6 10 10 O 1.21278 * 119.99716 * 0.02562 * 9 8 7 11 11 C 1.50695 * 119.99699 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47719 * 300.00122 * 11 9 8 13 13 C 1.53000 * 109.47409 * 60.00300 * 11 9 8 14 14 C 1.50707 * 109.46810 * 180.02562 * 11 9 8 15 15 H 1.07998 * 120.00096 * 324.94158 * 14 11 9 16 16 C 1.37880 * 119.99700 * 144.94895 * 14 11 9 17 17 N 1.31520 * 119.99654 * 175.17311 * 16 14 11 18 18 Si 1.86797 * 120.00257 * 355.16743 * 16 14 11 19 19 H 1.48503 * 109.47240 * 274.88403 * 18 16 14 20 20 H 1.48500 * 109.46883 * 34.88602 * 18 16 14 21 21 H 1.48497 * 109.46908 * 154.88318 * 18 16 14 22 22 C 1.52993 * 109.46928 * 59.99724 * 7 6 5 23 23 C 1.52999 * 109.46871 * 294.99907 * 4 3 2 24 24 H 1.09000 * 109.46916 * 59.99969 * 1 2 3 25 25 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46736 * 300.00412 * 1 2 3 27 27 H 1.09001 * 109.47298 * 240.00075 * 2 1 3 28 28 H 1.09000 * 109.46916 * 120.00030 * 2 1 3 29 29 H 1.09001 * 109.46953 * 59.99864 * 3 2 1 30 30 H 1.09000 * 109.47230 * 299.99838 * 3 2 1 31 31 H 1.09001 * 109.47174 * 54.99558 * 4 3 2 32 32 H 1.08996 * 109.47290 * 59.99882 * 5 4 3 33 33 H 1.08996 * 109.46841 * 299.99488 * 5 4 3 34 34 H 1.08998 * 109.47209 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47174 * 59.99378 * 6 5 4 36 36 H 1.09001 * 109.46543 * 299.99742 * 7 6 5 37 37 H 0.96997 * 120.00497 * 334.99709 * 8 7 6 38 38 H 1.09005 * 109.46601 * 54.87146 * 13 11 9 39 39 H 1.08995 * 109.47670 * 174.87158 * 13 11 9 40 40 H 1.08995 * 109.47091 * 294.87892 * 13 11 9 41 41 H 0.96998 * 119.99707 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.47495 * 60.00600 * 22 7 6 43 43 H 1.09005 * 109.46683 * 179.97438 * 22 7 6 44 44 H 1.08996 * 109.47290 * 300.00083 * 23 4 3 45 45 H 1.09007 * 109.47412 * 60.00130 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8795 -0.1250 6 6 5.6101 2.8796 -0.1237 7 6 6.1190 2.2703 1.1843 8 7 7.5840 2.2710 1.1857 9 6 8.2567 2.2714 2.3536 10 8 7.6492 2.2709 3.4033 11 6 9.7636 2.2715 2.3551 12 1 10.1276 1.3814 1.8420 13 6 10.2744 3.5205 1.6340 14 6 10.2645 2.2715 3.7765 15 1 9.7219 2.8086 4.5403 16 6 11.4156 1.5857 4.1017 17 7 11.9051 1.6630 5.3200 18 14 12.2799 0.5469 2.8121 19 1 11.6615 -0.8025 2.7676 20 1 12.1474 1.1963 1.4832 21 1 13.7180 0.4211 3.1603 22 6 5.6089 0.8334 1.3099 23 6 4.0794 0.8331 1.3083 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.8529 -0.8409 32 1 3.7164 3.4691 0.7165 33 1 3.7172 3.3136 -1.0566 34 1 5.9734 3.9033 -0.2137 35 1 5.9741 2.2898 -0.9650 36 1 5.7549 2.8600 2.0255 37 1 8.0698 2.2710 0.3462 38 1 9.8374 4.4083 2.0914 39 1 11.3603 3.5678 1.7139 40 1 9.9889 3.4755 0.5830 41 1 12.7151 1.1809 5.5487 42 1 5.9730 0.2436 0.4686 43 1 5.9719 0.3992 2.2415 44 1 3.7157 1.4227 2.1499 45 1 3.7161 -0.1907 1.3979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596903443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:09 Heat of formation + Delta-G solvation = -108.244709 kcal Electronic energy + Delta-G solvation = -20901.885236 eV Core-core repulsion = 17916.320808 eV Total energy + Delta-G solvation = -2985.564428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00253 -39.45896 -36.36872 -35.61657 -34.30815 -33.18957 -31.71031 -30.66595 -27.24972 -26.71574 -24.38930 -23.88385 -22.58731 -21.43888 -21.14187 -20.46692 -19.11589 -17.83120 -17.10968 -16.39607 -16.19002 -15.84114 -15.47188 -15.14088 -14.98262 -14.76863 -14.45307 -14.28156 -13.99857 -13.92710 -13.26378 -13.12810 -13.08591 -12.96951 -12.92783 -12.62923 -12.55475 -12.16576 -12.03600 -11.99833 -11.91342 -11.76077 -11.43442 -11.37900 -11.24301 -11.08595 -10.91504 -10.75495 -10.34360 -9.87427 -8.27664 -6.34079 1.34978 1.38587 1.48912 1.93746 2.35298 2.42146 3.09373 3.72174 3.74503 3.88989 4.12463 4.15491 4.23835 4.32368 4.38791 4.41502 4.44564 4.54227 4.59645 4.60850 4.73665 4.75158 4.83525 4.87395 4.90349 4.98818 5.06486 5.11300 5.14183 5.16274 5.21137 5.24458 5.32349 5.35338 5.39058 5.45862 5.51629 5.56069 5.59794 5.64527 5.73923 6.26391 6.68551 6.90190 7.27493 7.58659 8.90687 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034658 B = 0.003691 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.702344 B = 7584.144858 C = 7821.926047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.115 4.115 7 C 0.142 3.858 8 N -0.722 5.722 9 C 0.517 3.483 10 O -0.587 6.587 11 C -0.010 4.010 12 H 0.071 0.929 13 C -0.126 4.126 14 C -0.507 4.507 15 H 0.019 0.981 16 C 0.003 3.997 17 N -0.954 5.954 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.221 1.221 21 H -0.284 1.284 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.036 0.964 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.267 0.733 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.048 0.952 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.220 -1.511 -20.716 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.148 4.148 4 C -0.100 4.100 5 C -0.145 4.145 6 C -0.153 4.153 7 C 0.037 3.963 8 N -0.375 5.375 9 C 0.306 3.694 10 O -0.466 6.466 11 C -0.032 4.032 12 H 0.089 0.911 13 C -0.184 4.184 14 C -0.545 4.545 15 H 0.038 0.962 16 C -0.193 4.193 17 N -0.594 5.594 18 Si 0.770 3.230 19 H -0.196 1.196 20 H -0.144 1.144 21 H -0.210 1.210 22 C -0.165 4.165 23 C -0.145 4.145 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.248 0.752 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.521 -1.542 -19.851 27.193 hybrid contribution 0.873 -0.454 0.596 1.151 sum -17.647 -1.996 -19.255 26.195 Atomic orbital electron populations 1.21780 0.95668 1.01716 1.01850 1.21595 0.96017 0.96967 1.01972 1.21618 0.94086 0.96898 1.02201 1.21176 0.95434 0.96273 0.97109 1.21537 0.93611 0.96614 1.02781 1.21754 0.96863 1.01430 0.95210 1.21001 0.79431 0.96478 0.99383 1.46116 1.07066 1.75983 1.08298 1.21499 0.91374 0.73444 0.83107 1.90559 1.71233 1.50722 1.34057 1.19345 0.88707 0.98436 0.96666 0.91126 1.21814 1.01138 0.96424 0.98994 1.20905 1.08358 1.31825 0.93454 0.96250 1.26124 0.97599 0.97600 0.98012 1.70087 1.22987 1.44309 1.22002 0.85729 0.77219 0.79199 0.80806 1.19556 1.14364 1.21041 1.21870 0.97054 0.96589 1.00984 1.21552 0.93275 1.01382 0.98270 0.92238 0.92667 0.93123 0.91636 0.92615 0.92678 0.90818 0.90087 0.92721 0.89382 0.90922 0.89458 0.93283 0.75173 0.94462 0.92772 0.90228 0.92426 0.90470 0.95413 0.93358 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.71 5.69 30.60 0.17 -1.53 16 3 C -0.11 -1.50 4.68 30.60 0.14 -1.35 16 4 C -0.08 -1.26 2.19 -10.79 -0.02 -1.29 16 5 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 6 C -0.11 -2.08 5.39 30.60 0.16 -1.91 16 7 C 0.14 3.96 2.45 44.99 0.11 4.07 16 8 N -0.72 -22.87 4.98 -442.54 -2.20 -25.08 16 9 C 0.52 23.33 7.11 87.65 0.62 23.95 16 10 O -0.59 -32.90 15.43 -3.02 -0.05 -32.94 16 11 C -0.01 -0.46 2.30 -12.29 -0.03 -0.48 16 12 H 0.07 3.02 5.29 -2.39 -0.01 3.00 16 13 C -0.13 -4.75 9.03 71.98 0.65 -4.10 16 14 C -0.51 -30.82 8.36 25.60 0.21 -30.60 16 15 H 0.02 1.38 7.61 -2.91 -0.02 1.36 16 16 C 0.00 0.16 5.47 84.65 0.46 0.63 16 17 N -0.95 -62.16 13.96 21.45 0.30 -61.86 16 18 Si 0.95 43.03 27.00 68.60 1.85 44.88 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.22 -8.46 6.81 99.48 0.68 -7.78 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.13 -3.40 5.49 30.57 0.17 -3.23 16 23 C -0.11 -2.28 4.96 30.58 0.15 -2.13 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.84 6.56 -2.39 -0.02 0.83 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 37 H 0.41 9.82 8.12 -92.71 -0.75 9.07 16 38 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 2.17 7.71 -2.39 -0.02 2.15 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.41 6.56 -2.38 -0.02 1.39 16 Total: -1.00 -78.49 348.65 3.74 -74.75 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.15 Total: 20.86 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.68 Total: -20.61 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.91 Total: -86.94 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.05 Total: -32.94 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.85 Total: 44.88 kcal Total: -78.49 3.74 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596903443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.495 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds