Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.53002 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 4 3 2 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99771 * 204.99940 * 8 7 6 10 10 O 1.21279 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99935 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47030 * 59.99811 * 11 9 8 13 13 C 1.53001 * 109.47311 * 299.99908 * 11 9 8 14 14 C 1.50699 * 109.47042 * 179.97438 * 11 9 8 15 15 H 1.07996 * 120.00063 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99640 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00453 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99578 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47353 * 59.99980 * 18 16 14 20 20 H 1.48501 * 109.46848 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46874 * 299.99838 * 18 16 14 22 22 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 7 6 24 24 H 1.08998 * 109.46934 * 59.99959 * 1 2 3 25 25 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47325 * 299.99921 * 1 2 3 27 27 H 1.09000 * 109.46875 * 239.99792 * 2 1 3 28 28 H 1.08998 * 109.46934 * 120.00041 * 2 1 3 29 29 H 1.09000 * 109.47396 * 60.00111 * 3 2 1 30 30 H 1.08998 * 109.47230 * 299.99860 * 3 2 1 31 31 H 1.09002 * 109.47097 * 55.00131 * 4 3 2 32 32 H 1.08996 * 109.46929 * 59.99225 * 5 4 3 33 33 H 1.09002 * 109.46716 * 300.00030 * 5 4 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 37 37 H 0.97006 * 120.00568 * 24.99713 * 8 7 6 38 38 H 1.08999 * 109.46994 * 299.99925 * 13 11 9 39 39 H 1.09005 * 109.46706 * 59.99932 * 13 11 9 40 40 H 1.09004 * 109.47249 * 179.97438 * 13 11 9 41 41 H 0.97000 * 120.00439 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.47662 * 180.02562 * 22 7 6 43 43 H 1.09002 * 109.47075 * 300.00932 * 22 7 6 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 22 7 45 45 H 1.09001 * 109.47289 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.8329 1.3082 6 6 5.6095 0.8335 1.3091 7 6 6.1190 2.2707 1.1837 8 7 7.5840 2.2711 1.1839 9 6 8.2575 3.3681 1.5834 10 8 7.6507 4.3549 1.9423 11 6 9.7645 3.3683 1.5842 12 1 10.1284 3.1899 0.5723 13 6 10.2743 2.2635 2.5117 14 6 10.2664 4.7038 2.0697 15 1 9.5643 5.4750 2.3501 16 6 11.6219 4.9410 2.1559 17 7 12.4769 4.0017 1.8150 18 14 12.2439 6.5961 2.7585 19 1 11.7488 6.8390 4.1373 20 1 13.7289 6.5968 2.7580 21 1 11.7486 7.6685 1.8586 22 6 5.6096 2.8802 -0.1240 23 6 4.0796 2.8796 -0.1248 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.8528 -0.8410 32 1 3.7161 -0.1908 1.3978 33 1 3.7159 1.4225 2.1498 34 1 5.9735 0.2441 0.4674 35 1 5.9724 0.3996 2.2408 36 1 5.7551 2.8599 2.0252 37 1 8.0694 1.4819 0.8965 38 1 9.9105 2.4419 3.5235 39 1 9.9113 1.2977 2.1600 40 1 11.3644 2.2634 2.5119 41 1 13.4305 4.1686 1.8753 42 1 5.9729 3.9039 -0.2136 43 1 5.9736 2.2908 -0.9656 44 1 3.7156 3.4689 0.7168 45 1 3.7166 3.3134 -1.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596903446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = -89.156591 kcal Electronic energy + Delta-G solvation = -20818.304012 eV Core-core repulsion = 17833.567307 eV Total energy + Delta-G solvation = -2984.736705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57894 -38.09701 -35.30766 -33.66838 -33.03681 -30.79899 -30.65526 -29.35595 -25.76199 -25.08217 -23.17878 -22.55844 -21.64091 -20.52528 -19.93237 -19.08152 -16.47511 -16.03633 -15.50183 -15.33126 -14.81790 -14.40247 -14.37330 -14.13531 -13.66626 -13.48275 -13.03329 -12.94949 -12.61867 -12.31249 -12.21632 -12.03420 -11.73259 -11.52821 -11.34058 -11.08981 -10.97093 -10.95148 -10.79669 -10.69385 -10.64803 -10.51679 -10.27339 -10.16425 -9.97158 -9.89291 -8.93887 -8.53538 -8.32391 -8.25700 -5.99194 -4.02025 3.38724 3.40792 3.46558 3.81595 3.96246 4.49715 4.53980 4.60772 4.73226 4.86046 4.96266 5.16234 5.21036 5.28082 5.34077 5.41322 5.47067 5.53455 5.54819 5.60755 5.65279 5.71106 5.75779 5.84208 5.92996 6.04378 6.09064 6.10339 6.13697 6.19048 6.27855 6.35974 6.50442 6.57931 6.67118 6.87779 6.98275 7.23413 7.53022 7.80299 8.04148 8.21714 8.53752 9.06852 9.33906 9.63436 11.08436 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049895 B = 0.003330 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.048516 B = 8406.335328 C = 8711.252364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.126 4.126 7 C 0.146 3.854 8 N -0.744 5.744 9 C 0.520 3.480 10 O -0.548 6.548 11 C 0.028 3.972 12 H 0.051 0.949 13 C -0.131 4.131 14 C -0.499 4.499 15 H 0.073 0.927 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C -0.110 4.110 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.394 0.606 38 H 0.030 0.970 39 H 0.011 0.989 40 H 0.092 0.908 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 -10.386 -4.421 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.107 4.107 5 C -0.148 4.148 6 C -0.164 4.164 7 C 0.040 3.960 8 N -0.397 5.397 9 C 0.309 3.691 10 O -0.424 6.424 11 C 0.007 3.993 12 H 0.069 0.931 13 C -0.190 4.190 14 C -0.538 4.538 15 H 0.091 0.909 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.168 4.168 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.227 0.773 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.634 -9.668 -4.152 21.400 hybrid contribution 0.647 0.428 0.115 0.784 sum -17.987 -9.241 -4.038 20.621 Atomic orbital electron populations 1.21784 0.96207 1.01363 1.01698 1.21590 0.95506 0.97248 1.02060 1.21663 0.95113 0.96530 1.01971 1.21218 0.94606 0.96760 0.98097 1.21571 0.94747 1.00832 0.97636 1.21802 0.95897 0.96423 1.02239 1.20788 0.81404 0.95752 0.98013 1.46369 1.05702 1.17584 1.70039 1.21933 0.92184 0.81096 0.73848 1.90516 1.70939 1.33717 1.47180 1.18862 0.84673 0.97636 0.98092 0.93150 1.21734 1.05088 0.94148 0.97988 1.21118 0.91702 0.97806 1.43172 0.90885 1.24954 0.96748 0.97153 0.95447 1.69862 1.02064 1.32817 1.49005 0.86516 0.77107 0.84064 0.79496 1.20223 1.21410 1.20227 1.21924 0.94948 1.01997 0.97894 1.21542 0.95490 0.96017 1.01787 0.92916 0.92998 0.92824 0.92194 0.91766 0.91995 0.92127 0.91259 0.91673 0.91833 0.91703 0.91490 0.90164 0.77273 0.95078 0.96951 0.88928 0.92966 0.91306 0.92188 0.91880 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.93 5.69 -26.73 -0.15 -1.09 16 3 C -0.12 -0.95 4.68 -26.73 -0.13 -1.07 16 4 C -0.09 -0.83 2.19 -90.62 -0.20 -1.03 16 5 C -0.11 -1.07 4.96 -26.73 -0.13 -1.20 16 6 C -0.13 -1.43 5.39 -26.73 -0.14 -1.58 16 7 C 0.15 2.19 2.45 -67.93 -0.17 2.03 16 8 N -0.74 -13.15 4.97 -53.81 -0.27 -13.42 16 9 C 0.52 12.03 7.11 -10.98 -0.08 11.95 16 10 O -0.55 -14.49 15.12 5.56 0.08 -14.40 16 11 C 0.03 0.72 2.64 -92.92 -0.24 0.47 16 12 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 14 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 16 15 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -25.54 11.32 55.43 0.63 -24.91 16 18 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.13 -1.81 5.49 -26.73 -0.15 -1.96 16 23 C -0.11 -1.25 5.20 -26.73 -0.14 -1.38 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 37 H 0.39 6.08 8.02 -40.82 -0.33 5.75 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 40 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -30.74 348.24 -8.91 -39.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.36 Total: 2.16 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.21 Total: -11.44 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.36 Total: -38.33 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.74 -8.91 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596903446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.511 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds