Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.53002 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47628 * 295.00334 * 4 3 2 6 6 C 1.52997 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47060 * 59.99960 * 6 5 4 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.34778 * 119.99771 * 204.99940 * 8 7 6 10 10 O 1.21279 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99935 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47030 * 59.99811 * 11 9 8 13 13 C 1.53001 * 109.47311 * 299.99908 * 11 9 8 14 14 C 1.50699 * 109.47042 * 179.97438 * 11 9 8 15 15 H 1.07996 * 120.00063 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99640 * 180.02562 * 14 11 9 17 17 N 1.31512 * 120.00453 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99578 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47353 * 59.99980 * 18 16 14 20 20 H 1.48501 * 109.46848 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46874 * 299.99838 * 18 16 14 22 22 C 1.53002 * 109.47233 * 299.99657 * 7 6 5 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 7 6 24 24 H 1.08998 * 109.46934 * 59.99959 * 1 2 3 25 25 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47325 * 299.99921 * 1 2 3 27 27 H 1.09000 * 109.46875 * 239.99792 * 2 1 3 28 28 H 1.08998 * 109.46934 * 120.00041 * 2 1 3 29 29 H 1.09000 * 109.47396 * 60.00111 * 3 2 1 30 30 H 1.08998 * 109.47230 * 299.99860 * 3 2 1 31 31 H 1.09002 * 109.47097 * 55.00131 * 4 3 2 32 32 H 1.08996 * 109.46929 * 59.99225 * 5 4 3 33 33 H 1.09002 * 109.46716 * 300.00030 * 5 4 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 5 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 36 36 H 1.08992 * 109.47399 * 59.99823 * 7 6 5 37 37 H 0.97006 * 120.00568 * 24.99713 * 8 7 6 38 38 H 1.08999 * 109.46994 * 299.99925 * 13 11 9 39 39 H 1.09005 * 109.46706 * 59.99932 * 13 11 9 40 40 H 1.09004 * 109.47249 * 179.97438 * 13 11 9 41 41 H 0.97000 * 120.00439 * 179.97438 * 17 16 14 42 42 H 1.08993 * 109.47662 * 180.02562 * 22 7 6 43 43 H 1.09002 * 109.47075 * 300.00932 * 22 7 6 44 44 H 1.09002 * 109.47153 * 60.00231 * 23 22 7 45 45 H 1.09001 * 109.47289 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.8329 1.3082 6 6 5.6095 0.8335 1.3091 7 6 6.1190 2.2707 1.1837 8 7 7.5840 2.2711 1.1839 9 6 8.2575 3.3681 1.5834 10 8 7.6507 4.3549 1.9423 11 6 9.7645 3.3683 1.5842 12 1 10.1284 3.1899 0.5723 13 6 10.2743 2.2635 2.5117 14 6 10.2664 4.7038 2.0697 15 1 9.5643 5.4750 2.3501 16 6 11.6219 4.9410 2.1559 17 7 12.4769 4.0017 1.8150 18 14 12.2439 6.5961 2.7585 19 1 11.7488 6.8390 4.1373 20 1 13.7289 6.5968 2.7580 21 1 11.7486 7.6685 1.8586 22 6 5.6096 2.8802 -0.1240 23 6 4.0796 2.8796 -0.1248 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.8528 -0.8410 32 1 3.7161 -0.1908 1.3978 33 1 3.7159 1.4225 2.1498 34 1 5.9735 0.2441 0.4674 35 1 5.9724 0.3996 2.2408 36 1 5.7551 2.8599 2.0252 37 1 8.0694 1.4819 0.8965 38 1 9.9105 2.4419 3.5235 39 1 9.9113 1.2977 2.1600 40 1 11.3644 2.2634 2.5119 41 1 13.4305 4.1686 1.8753 42 1 5.9729 3.9039 -0.2136 43 1 5.9736 2.2908 -0.9656 44 1 3.7156 3.4689 0.7168 45 1 3.7166 3.3134 -1.0566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596903446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = -106.516198 kcal Electronic energy + Delta-G solvation = -20819.056781 eV Core-core repulsion = 17833.567307 eV Total energy + Delta-G solvation = -2985.489474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97162 -39.43950 -36.36280 -35.74127 -34.25990 -32.52232 -31.71598 -30.54162 -27.21993 -26.66507 -24.52358 -23.80961 -22.63068 -21.42210 -21.20318 -20.51142 -18.37624 -17.82429 -17.04043 -16.50241 -16.14582 -15.88499 -15.49702 -15.06840 -14.91549 -14.85932 -14.45115 -14.17140 -13.85773 -13.52562 -13.33867 -13.14056 -12.97605 -12.92002 -12.69774 -12.59117 -12.49152 -12.24441 -12.11342 -12.04025 -11.99358 -11.79195 -11.47156 -11.36781 -11.12098 -11.04580 -10.88313 -10.58428 -10.24020 -9.86339 -8.15424 -6.25821 1.39884 1.41596 1.50225 1.96607 2.36240 2.55598 3.13796 3.70356 3.78265 3.85273 4.12660 4.18427 4.34122 4.34967 4.38879 4.44720 4.55262 4.59810 4.62620 4.73436 4.75247 4.85923 4.89453 4.95132 5.00756 5.01520 5.08572 5.11874 5.16852 5.20741 5.23530 5.32147 5.35981 5.38477 5.47582 5.50358 5.57820 5.64588 5.70009 5.78175 5.95242 6.22320 6.76431 6.89173 7.40015 7.59358 8.90217 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.049895 B = 0.003330 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.048516 B = 8406.335328 C = 8711.252364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.117 4.117 7 C 0.142 3.858 8 N -0.723 5.723 9 C 0.521 3.479 10 O -0.590 6.590 11 C 0.024 3.976 12 H 0.039 0.961 13 C -0.118 4.118 14 C -0.530 4.530 15 H 0.046 0.954 16 C 0.019 3.981 17 N -0.911 5.911 18 Si 0.955 3.045 19 H -0.276 1.276 20 H -0.273 1.273 21 H -0.277 1.277 22 C -0.125 4.125 23 C -0.106 4.106 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.408 0.592 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.265 0.735 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.339 -12.201 -4.935 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.100 4.100 5 C -0.145 4.145 6 C -0.154 4.154 7 C 0.038 3.962 8 N -0.375 5.375 9 C 0.310 3.690 10 O -0.469 6.469 11 C 0.002 3.998 12 H 0.057 0.943 13 C -0.177 4.177 14 C -0.569 4.569 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.550 5.550 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.576 -11.541 -4.686 23.203 hybrid contribution 0.918 0.976 0.241 1.362 sum -18.658 -10.565 -4.445 21.897 Atomic orbital electron populations 1.21787 0.95855 1.01797 1.01692 1.21573 0.95834 0.96409 1.02377 1.21617 0.94002 0.97354 1.01939 1.21173 0.95486 0.95074 0.98291 1.21579 0.93266 1.02099 0.97515 1.21766 0.97103 0.93373 1.03200 1.21008 0.79315 0.98348 0.97557 1.46131 1.07115 1.16329 1.67962 1.21527 0.91547 0.81874 0.74074 1.90494 1.71396 1.35574 1.49473 1.18804 0.86460 0.96908 0.97592 0.94293 1.21548 1.03496 0.95473 0.97135 1.21266 0.91982 0.99084 1.44524 0.93532 1.25604 0.96702 1.00338 0.95363 1.69937 1.02323 1.33957 1.48808 0.85659 0.77253 0.80218 0.78790 1.20183 1.19775 1.20252 1.21860 0.97055 0.99744 0.97676 1.21517 0.93223 0.97735 1.01915 0.92834 0.92367 0.92980 0.91761 0.91509 0.92416 0.91883 0.90305 0.89396 0.92552 0.89831 0.91207 0.92965 0.75565 0.95995 0.92847 0.91103 0.92568 0.95136 0.90841 0.92945 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.48 5.69 30.59 0.17 -1.31 16 3 C -0.11 -1.57 4.68 30.59 0.14 -1.43 16 4 C -0.08 -1.34 2.19 -10.79 -0.02 -1.36 16 5 C -0.11 -1.79 4.96 30.59 0.15 -1.64 16 6 C -0.12 -2.37 5.39 30.59 0.16 -2.20 16 7 C 0.14 4.21 2.45 44.99 0.11 4.32 16 8 N -0.72 -25.19 4.97 -442.54 -2.20 -27.39 16 9 C 0.52 24.63 7.11 87.66 0.62 25.25 16 10 O -0.59 -32.55 15.12 -3.03 -0.05 -32.59 16 11 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 12 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.12 -5.49 8.87 71.98 0.64 -4.85 16 14 C -0.53 -31.49 8.37 25.60 0.21 -31.27 16 15 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 16 C 0.02 1.08 5.30 84.66 0.45 1.53 16 17 N -0.91 -51.89 11.32 21.45 0.24 -51.65 16 18 Si 0.96 45.75 29.54 68.60 2.03 47.77 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 C -0.12 -3.47 5.49 30.59 0.17 -3.30 16 23 C -0.11 -2.29 5.20 30.60 0.16 -2.13 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.77 6.56 -2.39 -0.02 0.75 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.15 6.56 -2.39 -0.02 1.13 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.87 7.58 -2.39 -0.02 1.85 16 37 H 0.41 11.83 8.02 -92.70 -0.74 11.08 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.97 7.56 -2.38 -0.02 1.95 16 40 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 41 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.04 348.24 3.87 -64.16 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.19 Total: 17.91 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.65 Total: -18.21 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.96 Total: -79.04 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.05 Total: -32.59 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.04 3.87 -64.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596903446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.354 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds