Wall clock time and date at job start Mon Mar 30 2020 07:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.08997 * 110.43510 * 323.91175 * 15 14 13 17 17 C 1.54098 * 110.48622 * 86.45547 * 15 14 13 18 18 O 1.43741 * 107.29389 * 116.64711 * 17 15 14 19 19 C 1.44380 * 106.97665 * 26.51018 * 18 17 15 20 20 H 1.09005 * 110.61598 * 78.43888 * 19 18 17 21 21 C 1.52996 * 110.62086 * 201.28024 * 19 18 17 22 22 C 1.52999 * 117.49924 * 7.29261 * 21 19 18 23 23 C 1.53005 * 117.50052 * 298.63525 * 21 19 18 24 24 C 1.54811 * 110.48865 * 201.22089 * 15 14 13 25 25 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 27 27 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 30 30 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 31 31 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 33 33 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 36 36 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 37 37 H 1.09009 * 109.87863 * 236.07025 * 17 15 14 38 38 H 1.08998 * 109.87953 * 357.22085 * 17 15 14 39 39 H 1.08999 * 115.55301 * 152.96408 * 21 19 18 40 40 H 1.09004 * 117.49989 * 0.02562 * 22 21 19 41 41 H 1.09003 * 117.50114 * 145.01359 * 22 21 19 42 42 H 1.08998 * 117.49575 * 214.97765 * 23 21 19 43 43 H 1.09000 * 117.49529 * 359.97438 * 23 21 19 44 44 H 1.08997 * 110.90850 * 338.64550 * 24 15 14 45 45 H 1.09004 * 110.90364 * 102.24180 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.0492 -1.7748 3.5287 17 6 3.4138 -0.1672 4.0690 18 8 3.2769 0.4776 5.3463 19 6 2.1524 -0.1376 6.0107 20 1 2.4366 -1.1012 6.4337 21 6 1.5992 0.7844 7.0991 22 6 2.1740 2.1997 7.1853 23 6 2.5352 1.1604 8.2495 24 6 1.1180 -0.3253 4.8719 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2489 32 1 1.6767 -1.7491 -1.2491 33 1 1.6668 -0.1937 -5.6867 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 1.8198 0.9437 2.4401 37 1 4.1164 -0.9972 4.1461 38 1 3.7647 0.5503 3.3273 39 1 0.5422 0.6555 7.3320 40 1 2.9461 2.4740 6.4664 41 1 1.4953 3.0019 7.4752 42 1 2.0939 1.2792 9.2391 43 1 3.5451 0.7505 8.2311 44 1 0.5768 0.6014 4.6813 45 1 0.4277 -1.1367 5.1030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597131096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:46 Heat of formation + Delta-G solvation = -34.943966 kcal Electronic energy + Delta-G solvation = -20971.497782 eV Core-core repulsion = 17989.111913 eV Total energy + Delta-G solvation = -2982.385869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06920 -37.75166 -36.58610 -34.26432 -32.25368 -30.72805 -28.47701 -27.37788 -26.38992 -25.06731 -23.84032 -22.52491 -22.01650 -21.08494 -20.20616 -17.92893 -16.89701 -16.72661 -16.44655 -15.46879 -15.02530 -14.77317 -14.59389 -14.13041 -13.84269 -13.65498 -13.24348 -12.72276 -12.37010 -12.24719 -12.12317 -11.83208 -11.71570 -11.69065 -11.56967 -11.09183 -11.05607 -10.90587 -10.86653 -10.52508 -10.50284 -10.42382 -10.33694 -9.81824 -9.77167 -9.67643 -9.29847 -8.91079 -8.50205 -8.18902 -6.00387 -3.96635 3.31586 3.39333 3.42276 3.52822 3.66921 4.14321 4.46720 4.47715 4.61397 4.72945 4.75350 4.82584 5.00872 5.15666 5.25452 5.32588 5.33306 5.46578 5.50929 5.55997 5.60135 5.63396 5.72350 5.83103 5.86733 5.92005 5.99454 6.07683 6.13166 6.22336 6.39304 6.57952 6.67013 6.73644 6.78652 7.06287 7.11918 7.17722 7.26028 7.31574 7.43910 7.56552 7.84781 8.59335 9.05564 9.62661 11.12746 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042171 B = 0.003478 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.809056 B = 8047.565455 C = 8236.172685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.065 3.935 14 N -0.673 5.673 15 C 0.055 3.945 16 H 0.089 0.911 17 C 0.019 3.981 18 O -0.372 6.372 19 C 0.102 3.898 20 H 0.070 0.930 21 C -0.154 4.154 22 C -0.164 4.164 23 C -0.178 4.178 24 C -0.133 4.133 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.344 0.656 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 -0.464 23.393 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.063 4.063 14 N -0.305 5.305 15 C -0.057 4.057 16 H 0.107 0.893 17 C -0.060 4.060 18 O -0.291 6.291 19 C 0.045 3.955 20 H 0.088 0.912 21 C -0.172 4.172 22 C -0.201 4.201 23 C -0.215 4.215 24 C -0.172 4.172 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.165 0.835 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.990 -0.621 23.264 23.293 hybrid contribution 1.483 -0.872 -0.426 1.773 sum 2.473 -1.493 22.838 23.020 Atomic orbital electron populations 1.21615 0.94485 1.00657 1.00742 1.20423 0.96240 0.95062 0.93206 1.21787 0.99605 0.96435 1.01024 1.19626 0.95798 0.95447 0.93325 1.21136 1.31445 1.13244 0.88676 0.90409 1.25021 0.95811 0.96739 0.96031 1.69910 1.46130 1.40648 0.97831 0.86845 0.81282 0.84053 0.77461 1.20443 1.21575 1.19209 1.22206 0.96404 0.98143 0.89587 1.60621 1.62960 1.06488 1.00450 1.22972 0.91586 0.99553 0.91540 0.89304 1.24017 0.98354 0.97517 0.86127 1.88844 1.50232 1.60366 1.29656 1.22583 0.85902 0.94708 0.92332 0.91172 1.22278 0.98621 0.98158 0.98168 1.22875 1.03725 0.91562 1.01960 1.22950 1.00389 1.04349 0.93853 1.23101 0.97753 1.03416 0.92890 0.93677 0.92098 0.94236 0.94135 0.91084 0.94573 0.96960 0.97176 0.92883 0.95792 0.91490 0.83532 0.92532 0.89849 0.86739 0.87704 0.89125 0.89017 0.88772 0.89451 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -13.92 8.20 -34.44 -0.28 -14.20 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.74 13.96 55.43 0.77 -26.96 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.04 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.07 1.02 4.49 -3.82 -0.02 1.01 16 14 N -0.67 -8.99 5.45 -105.11 -0.57 -9.57 16 15 C 0.05 0.62 3.35 -66.18 -0.22 0.40 16 16 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 17 C 0.02 0.21 7.29 37.73 0.28 0.49 16 18 O -0.37 -4.42 9.68 -35.23 -0.34 -4.76 16 19 C 0.10 1.00 3.69 -25.68 -0.09 0.91 16 20 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.36 5.73 -90.62 -0.52 -1.88 16 22 C -0.16 -1.50 9.90 -26.70 -0.26 -1.77 16 23 C -0.18 -1.48 10.23 -26.69 -0.27 -1.76 16 24 C -0.13 -1.33 6.31 -24.73 -0.16 -1.49 16 25 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 26 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 30 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 32 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.02 0.37 8.11 -51.93 -0.42 -0.05 16 35 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.34 4.60 6.29 -39.29 -0.25 4.35 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.12 7.10 -51.93 -0.37 0.75 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.95 7.98 -51.93 -0.41 0.54 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -29.34 344.43 -9.01 -38.35 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.15 Total: 2.46 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.24 Total: -21.75 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.20 Total: -36.53 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.34 Total: -4.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.34 -9.01 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597131096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.406 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds