Wall clock time and date at job start Mon Mar 30 2020 07:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.52996 * 109.47406 * 239.99431 * 2 1 3 5 5 C 1.50701 * 109.46820 * 59.99928 * 4 2 1 6 6 H 1.08000 * 120.00070 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99993 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00130 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47108 * 89.99504 * 9 7 5 11 11 H 1.48498 * 109.47097 * 209.99712 * 9 7 5 12 12 H 1.48499 * 109.46508 * 329.99366 * 9 7 5 13 13 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 14 14 N 1.46901 * 109.46916 * 299.99733 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 H 1.08997 * 110.43510 * 323.91175 * 15 14 13 17 17 C 1.54098 * 110.48622 * 86.45547 * 15 14 13 18 18 O 1.43741 * 107.29389 * 116.64711 * 17 15 14 19 19 C 1.44380 * 106.97665 * 26.51018 * 18 17 15 20 20 H 1.09005 * 110.61598 * 78.43888 * 19 18 17 21 21 C 1.52996 * 110.62086 * 201.28024 * 19 18 17 22 22 C 1.52999 * 117.49924 * 7.29261 * 21 19 18 23 23 C 1.53005 * 117.50052 * 298.63525 * 21 19 18 24 24 C 1.54811 * 110.48865 * 201.22089 * 15 14 13 25 25 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 27 27 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 30 30 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 31 31 H 1.08993 * 109.47740 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47573 * 300.00304 * 4 2 1 33 33 H 0.96999 * 120.00009 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46889 * 180.02562 * 13 2 1 35 35 H 1.08995 * 109.47384 * 59.99754 * 13 2 1 36 36 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 37 37 H 1.09009 * 109.87863 * 236.07025 * 17 15 14 38 38 H 1.08998 * 109.87953 * 357.22085 * 17 15 14 39 39 H 1.08999 * 115.55301 * 152.96408 * 21 19 18 40 40 H 1.09004 * 117.49989 * 0.02562 * 22 21 19 41 41 H 1.09003 * 117.50114 * 145.01359 * 22 21 19 42 42 H 1.08998 * 117.49575 * 214.97765 * 23 21 19 43 43 H 1.09000 * 117.49529 * 359.97438 * 23 21 19 44 44 H 1.08997 * 110.90850 * 338.64550 * 24 15 14 45 45 H 1.09004 * 110.90364 * 102.24180 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 1.4324 0.1378 -4.8058 9 14 2.9453 -2.0006 -3.9032 10 1 2.0867 -3.2114 -3.9491 11 1 3.7376 -1.9078 -5.1557 12 1 3.8653 -2.0898 -2.7410 13 6 2.0399 -0.7213 1.2493 14 7 1.5503 -0.0286 2.4487 15 6 2.0218 -0.6944 3.6704 16 1 2.0492 -1.7748 3.5287 17 6 3.4138 -0.1672 4.0690 18 8 3.2769 0.4776 5.3463 19 6 2.1524 -0.1376 6.0107 20 1 2.4366 -1.1012 6.4337 21 6 1.5992 0.7844 7.0991 22 6 2.1740 2.1997 7.1853 23 6 2.5352 1.1604 8.2495 24 6 1.1180 -0.3253 4.8719 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7218 -1.2489 32 1 1.6767 -1.7491 -1.2491 33 1 1.6668 -0.1937 -5.6867 34 1 3.1300 -0.7209 1.2495 35 1 1.6766 -1.7489 1.2494 36 1 1.8198 0.9437 2.4401 37 1 4.1164 -0.9972 4.1461 38 1 3.7647 0.5503 3.3273 39 1 0.5422 0.6555 7.3320 40 1 2.9461 2.4740 6.4664 41 1 1.4953 3.0019 7.4752 42 1 2.0939 1.2792 9.2391 43 1 3.5451 0.7505 8.2311 44 1 0.5768 0.6014 4.6813 45 1 0.4277 -1.1367 5.1030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597131096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:45 Heat of formation + Delta-G solvation = -52.252642 kcal Electronic energy + Delta-G solvation = -20972.248343 eV Core-core repulsion = 17989.111913 eV Total energy + Delta-G solvation = -2983.136430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91810 -39.07784 -37.42640 -35.53473 -34.21824 -31.70323 -29.87052 -28.82988 -27.92683 -26.44024 -24.71994 -23.76201 -23.17469 -21.95338 -20.96967 -19.48581 -18.86857 -17.66889 -17.30414 -16.47498 -16.25072 -15.82109 -15.75430 -15.58495 -15.27685 -14.80910 -14.54592 -14.29581 -14.09286 -13.60670 -13.08105 -12.99946 -12.85822 -12.72758 -12.61060 -12.43328 -12.36974 -12.26062 -12.24408 -12.07801 -11.77326 -11.70390 -11.39171 -11.22280 -11.11810 -10.95579 -10.80601 -10.69973 -10.52361 -9.25192 -8.21651 -6.22025 1.35984 1.37486 1.48373 2.39520 2.80588 2.91594 3.13458 3.20275 3.61609 3.86103 3.93611 4.07014 4.07693 4.12657 4.18040 4.22392 4.31679 4.40527 4.49970 4.60650 4.69788 4.75912 4.78984 4.79984 4.84331 4.91872 5.03362 5.06149 5.06818 5.10022 5.18458 5.20543 5.28605 5.36563 5.37407 5.45544 5.52692 5.62366 5.75424 5.81701 5.92024 6.14872 6.41460 6.46426 6.85639 7.40500 8.94685 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.042171 B = 0.003478 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.809056 B = 8047.565455 C = 8236.172685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.049 4.049 3 C -0.125 4.125 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.044 0.956 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.248 1.248 13 C 0.078 3.922 14 N -0.673 5.673 15 C 0.056 3.944 16 H 0.096 0.904 17 C 0.020 3.980 18 O -0.388 6.388 19 C 0.101 3.899 20 H 0.080 0.920 21 C -0.156 4.156 22 C -0.175 4.175 23 C -0.172 4.172 24 C -0.126 4.126 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.344 0.656 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -1.939 25.967 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.172 1.172 13 C -0.051 4.051 14 N -0.305 5.305 15 C -0.055 4.055 16 H 0.114 0.886 17 C -0.059 4.059 18 O -0.308 6.308 19 C 0.043 3.957 20 H 0.097 0.903 21 C -0.174 4.174 22 C -0.212 4.212 23 C -0.209 4.209 24 C -0.165 4.165 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.506 -2.097 25.870 25.998 hybrid contribution 1.272 -0.323 -1.183 1.767 sum 2.779 -2.420 24.687 24.960 Atomic orbital electron populations 1.21510 0.94603 1.00427 1.00054 1.20356 0.96095 0.95296 0.93180 1.21698 0.99764 0.96056 1.00694 1.19595 0.95633 0.95432 0.93416 1.21441 1.30048 1.12142 0.90532 0.93819 1.25941 0.97628 1.00256 0.95761 1.70069 1.48342 1.42902 0.98461 0.85785 0.79684 0.79990 0.77920 1.19560 1.21570 1.17203 1.21935 0.96514 0.97824 0.88813 1.60577 1.63030 1.06471 1.00407 1.23025 0.91913 0.99711 0.90851 0.88566 1.23980 0.98478 0.97489 0.85923 1.88844 1.51105 1.60919 1.29928 1.22716 0.85256 0.95263 0.92435 0.90262 1.22382 0.99465 0.97485 0.98040 1.22860 1.03768 0.92286 1.02243 1.22996 1.00077 1.03396 0.94467 1.23056 0.97673 1.03516 0.92210 0.91547 0.95473 0.94189 0.93748 0.94541 0.91740 0.96878 0.96899 0.92913 0.95324 0.91155 0.83510 0.91762 0.90637 0.85228 0.89628 0.88063 0.87315 0.89513 0.90279 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 2 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16 3 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 5 C -0.50 -28.25 8.20 25.60 0.21 -28.04 16 6 H 0.04 2.69 5.92 -2.91 -0.02 2.68 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 8 N -0.96 -60.31 13.96 21.45 0.30 -60.01 16 9 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 13 C 0.08 2.26 4.49 86.30 0.39 2.64 16 14 N -0.67 -16.20 5.45 -486.45 -2.65 -18.85 16 15 C 0.06 1.10 3.35 45.90 0.15 1.26 16 16 H 0.10 1.80 7.87 -2.39 -0.02 1.78 16 17 C 0.02 0.41 7.29 72.35 0.53 0.94 16 18 O -0.39 -8.55 9.68 -148.98 -1.44 -9.99 16 19 C 0.10 1.73 3.69 31.27 0.12 1.84 16 20 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 21 C -0.16 -2.38 5.73 -10.79 -0.06 -2.44 16 22 C -0.17 -2.93 9.90 30.62 0.30 -2.63 16 23 C -0.17 -2.51 10.23 30.62 0.31 -2.20 16 24 C -0.13 -2.17 6.31 31.89 0.20 -1.96 16 25 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 26 H 0.03 1.16 6.62 -2.39 -0.02 1.14 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.53 6.62 -2.39 -0.02 1.52 16 30 H 0.06 1.91 6.57 -2.39 -0.02 1.89 16 31 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 32 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 33 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.03 0.81 8.11 -2.39 -0.02 0.79 16 35 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.34 8.34 6.29 -89.69 -0.56 7.78 16 37 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.08 1.65 7.65 -2.39 -0.02 1.63 16 39 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.77 7.10 -2.38 -0.02 1.76 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.52 7.98 -2.39 -0.02 1.50 16 45 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.05 344.43 2.24 -61.81 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.33 Total: 19.91 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 3.82 Total: -39.35 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.35 Total: -78.86 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.44 Total: -9.99 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -64.05 2.24 -61.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597131096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.559 kcal (2) G-P(sol) polarization free energy of solvation -64.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds