Wall clock time and date at job start Mon Mar 30 2020 07:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.53002 * 109.47092 * 120.00300 * 2 1 3 5 5 C 1.50696 * 109.46919 * 299.99835 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00040 * 9 7 5 12 12 H 1.48497 * 109.46870 * 239.99850 * 9 7 5 13 13 C 1.53006 * 109.46974 * 240.00468 * 2 1 3 14 14 N 1.46892 * 109.47135 * 59.99719 * 13 2 1 15 15 C 1.46905 * 110.99935 * 180.02562 * 14 13 2 16 16 H 1.08999 * 110.75041 * 37.01979 * 15 14 13 17 17 C 1.54384 * 110.84487 * 273.54898 * 15 14 13 18 18 O 1.43244 * 107.58387 * 220.45069 * 17 15 14 19 19 C 1.43643 * 109.97235 * 358.29097 * 18 17 15 20 20 H 1.09003 * 110.30943 * 265.51401 * 19 18 17 21 21 C 1.52998 * 110.30962 * 143.34271 * 19 18 17 22 22 C 1.53002 * 117.50142 * 130.07288 * 21 19 18 23 23 C 1.52994 * 60.00268 * 252.51406 * 22 21 19 24 24 C 1.54938 * 105.13812 * 24.42737 * 19 18 17 25 25 H 1.09002 * 109.47045 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.47375 * 59.99908 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47006 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47142 * 300.00234 * 3 2 1 30 30 H 1.09002 * 109.46838 * 60.00684 * 3 2 1 31 31 H 1.09000 * 109.46497 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46623 * 60.00164 * 4 2 1 33 33 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 34 34 H 1.09001 * 109.46611 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.46866 * 299.99774 * 13 2 1 36 36 H 1.00903 * 111.00303 * 56.04959 * 14 13 2 37 37 H 1.08996 * 109.83090 * 339.96483 * 17 15 14 38 38 H 1.08994 * 109.83213 * 100.94518 * 17 15 14 39 39 H 1.08997 * 115.55216 * 275.78220 * 21 19 18 40 40 H 1.09002 * 117.49811 * 359.97438 * 22 21 19 41 41 H 1.08998 * 117.50036 * 145.01526 * 22 21 19 42 42 H 1.09005 * 117.49725 * 252.51157 * 23 22 21 43 43 H 1.08994 * 117.52229 * 107.48175 * 23 22 21 44 44 H 1.09003 * 111.12616 * 205.63524 * 24 19 18 45 45 H 1.09000 * 111.12842 * 81.47384 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9171 0.8674 2.3806 7 6 1.8712 -0.4818 3.7320 8 7 2.6322 -1.5476 3.8525 9 14 1.2491 0.3992 5.2572 10 1 0.4246 1.5663 4.8531 11 1 0.4243 -0.5340 6.0660 12 1 2.4045 0.8659 6.0650 13 6 2.0400 -0.7212 -1.2494 14 7 1.5502 -0.0287 -2.4487 15 6 2.0207 -0.6951 -3.6704 16 1 2.0339 -1.7771 -3.5395 17 6 3.4156 -0.1739 -4.0780 18 8 3.4256 -0.0337 -5.5036 19 6 2.1660 -0.4595 -6.0473 20 1 2.2205 -1.5038 -6.3550 21 6 1.7730 0.4248 -7.2324 22 6 1.3543 -0.2743 -8.5273 23 6 2.7063 0.4370 -8.4448 24 6 1.1487 -0.2921 -4.8907 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -1.7490 1.2491 33 1 2.9555 -2.0049 3.0605 34 1 3.1300 -0.7208 -1.2495 35 1 1.6766 -1.7488 -1.2494 36 1 1.8197 0.9437 -2.4402 37 1 3.6004 0.7929 -3.6100 38 1 4.1809 -0.8869 -3.7714 39 1 1.2677 1.3561 -6.9768 40 1 1.3592 -1.3643 -8.5350 41 1 0.5731 0.1969 -9.1238 42 1 2.8146 1.3764 -8.9870 43 1 3.6004 -0.1846 -8.3979 44 1 0.3031 -0.9694 -5.0101 45 1 0.8130 0.7418 -4.8093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597131099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:59 Heat of formation + Delta-G solvation = -43.770206 kcal Electronic energy + Delta-G solvation = -20800.609036 eV Core-core repulsion = 17817.840432 eV Total energy + Delta-G solvation = -2982.768604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.01610 -37.76960 -36.78719 -34.41386 -32.44042 -30.62915 -28.36459 -26.56080 -26.38644 -25.01179 -23.56518 -22.66597 -22.42922 -21.31123 -20.35394 -18.29087 -17.03666 -16.50780 -16.26429 -15.47822 -15.27086 -14.60516 -14.34345 -14.12462 -13.84332 -13.68538 -13.24378 -12.77730 -12.56819 -12.21612 -12.10330 -11.82530 -11.71084 -11.63696 -11.51545 -11.18136 -11.02190 -10.97237 -10.87544 -10.58600 -10.56168 -10.36385 -10.12823 -10.01015 -9.82628 -9.67830 -9.30980 -8.41147 -8.28149 -8.23126 -6.30297 -3.98193 3.24036 3.45420 3.49196 3.61910 3.89931 4.08850 4.42599 4.50305 4.58793 4.63965 4.73477 4.80066 4.96774 5.09362 5.23490 5.25025 5.35658 5.44482 5.51549 5.60244 5.60525 5.63623 5.65497 5.82446 5.84202 5.84772 5.90460 6.00642 6.12379 6.20261 6.37706 6.54395 6.66666 6.73520 6.86067 7.06618 7.09301 7.15617 7.23922 7.40017 7.48838 7.59132 8.28856 8.52969 8.94550 9.72488 11.09736 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.053796 B = 0.003127 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.358156 B = 8951.694351 C = 9077.368123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.129 4.129 4 C 0.020 3.980 5 C -0.587 4.587 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 1.071 2.929 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.067 3.933 14 N -0.671 5.671 15 C 0.055 3.945 16 H 0.092 0.908 17 C 0.022 3.978 18 O -0.376 6.376 19 C 0.108 3.892 20 H 0.070 0.930 21 C -0.154 4.154 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.134 4.134 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.342 0.658 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 3.039 -21.615 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.186 4.186 4 C -0.017 4.017 5 C -0.626 4.626 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.555 5.555 9 Si 0.900 3.100 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.062 4.062 14 N -0.303 5.303 15 C -0.056 4.056 16 H 0.110 0.890 17 C -0.057 4.057 18 O -0.295 6.295 19 C 0.050 3.950 20 H 0.087 0.913 21 C -0.172 4.172 22 C -0.212 4.212 23 C -0.206 4.206 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.395 2.773 -20.066 20.398 hybrid contribution 0.880 0.139 -1.466 1.716 sum -1.515 2.912 -21.532 21.781 Atomic orbital electron populations 1.21593 0.94744 1.00568 1.00367 1.20494 0.96033 0.94993 0.93693 1.21772 0.99635 0.96596 1.00629 1.19256 0.95213 0.95139 0.92126 1.22071 1.34445 1.14239 0.91800 0.92807 1.25790 0.95367 0.96615 1.01406 1.70716 1.32695 1.18692 1.33429 0.83520 0.76035 0.75253 0.75217 1.21553 1.21485 1.21527 1.22193 0.96448 0.98137 0.89372 1.60578 1.62816 1.06394 1.00506 1.23164 0.91361 0.99742 0.91361 0.89016 1.23984 0.98970 1.00913 0.81822 1.88422 1.34469 1.87158 1.19440 1.22485 0.83507 0.96359 0.92644 0.91261 1.22370 1.04602 1.01321 0.88944 1.22983 0.98753 0.99839 0.99600 1.22837 0.94181 1.02603 1.00950 1.23225 0.98064 1.03471 0.92461 0.92480 0.93790 0.94268 0.94158 0.94724 0.91464 0.97867 0.97636 0.92161 0.95734 0.91491 0.83713 0.91381 0.91517 0.87356 0.88694 0.88505 0.88817 0.88533 0.89619 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 2 C -0.05 -1.02 0.60 -154.50 -0.09 -1.11 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 4 C 0.02 0.50 3.35 -27.88 -0.09 0.41 16 5 C -0.59 -16.13 7.65 -34.44 -0.26 -16.39 16 6 H 0.05 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.13 13.65 55.43 0.76 -27.38 16 9 Si 1.07 25.44 29.90 -169.99 -5.08 20.35 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.07 1.12 4.51 -3.82 -0.02 1.10 16 14 N -0.67 -9.29 5.57 -104.67 -0.58 -9.87 16 15 C 0.06 0.66 3.29 -65.76 -0.22 0.44 16 16 H 0.09 1.11 7.91 -51.93 -0.41 0.69 16 17 C 0.02 0.27 7.46 37.88 0.28 0.55 16 18 O -0.38 -4.80 10.99 -35.23 -0.39 -5.19 16 19 C 0.11 1.12 3.62 -25.71 -0.09 1.02 16 20 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 21 C -0.15 -1.41 5.48 -90.62 -0.50 -1.91 16 22 C -0.17 -1.30 10.19 -26.73 -0.27 -1.58 16 23 C -0.17 -1.43 10.20 -26.73 -0.27 -1.70 16 24 C -0.13 -1.39 6.26 -24.49 -0.15 -1.54 16 25 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 26 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.07 1.37 6.62 -51.93 -0.34 1.02 16 31 H 0.00 0.08 8.00 -51.93 -0.42 -0.33 16 32 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 33 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 34 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 35 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 36 H 0.34 4.63 6.20 -39.29 -0.24 4.39 16 37 H 0.07 0.84 7.57 -51.93 -0.39 0.45 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.97 7.96 -51.93 -0.41 0.56 16 40 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -29.75 348.59 -9.39 -39.14 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.15 Total: 2.19 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -1.19 Total: -24.51 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.17 Total: -37.25 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.39 Total: -5.19 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.75 -9.39 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597131099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.631 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds