Wall clock time and date at job start Mon Mar 30 2020 09:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53008 * 109.46774 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46995 * 60.00238 * 7 6 4 9 9 C 1.53000 * 109.47320 * 299.99845 * 8 7 6 10 10 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 11 11 H 1.09000 * 109.47312 * 60.00037 * 10 4 3 12 12 N 1.46493 * 109.47177 * 299.99698 * 10 4 3 13 13 C 1.34776 * 119.99944 * 155.00110 * 12 10 4 14 14 O 1.21276 * 120.00121 * 0.02562 * 13 12 10 15 15 C 1.50707 * 120.00010 * 180.02562 * 13 12 10 16 16 H 1.08999 * 109.47179 * 59.99885 * 15 13 12 17 17 C 1.53005 * 109.46773 * 299.99997 * 15 13 12 18 18 C 1.50698 * 109.46791 * 180.02562 * 15 13 12 19 19 H 1.07991 * 120.00717 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99504 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00424 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99822 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46916 * 89.99914 * 22 20 18 24 24 H 1.48503 * 109.47035 * 209.99722 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99811 * 22 20 18 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 34 34 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 35 35 H 1.09000 * 109.47044 * 300.00132 * 7 6 4 36 36 H 1.08998 * 109.46504 * 179.97438 * 7 6 4 37 37 H 1.08996 * 109.46657 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46863 * 59.99768 * 8 7 6 39 39 H 1.09001 * 109.46578 * 300.00351 * 9 8 7 40 40 H 1.08993 * 109.47427 * 179.97438 * 9 8 7 41 41 H 0.96996 * 119.99998 * 335.00005 * 12 10 4 42 42 H 1.08999 * 109.47177 * 299.99889 * 17 15 13 43 43 H 1.08997 * 109.46864 * 60.00057 * 17 15 13 44 44 H 1.09003 * 109.46717 * 180.02562 * 17 15 13 45 45 H 0.96993 * 120.00612 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 5.6105 0.8330 1.3061 8 6 6.1200 2.2702 1.1806 9 6 5.6095 2.8801 -0.1264 10 6 4.0800 2.8794 -0.1264 11 1 3.7170 3.4687 0.7157 12 7 3.5912 3.4633 -1.3779 13 6 3.4625 4.7999 -1.4928 14 8 3.7517 5.5194 -0.5603 15 6 2.9591 5.4006 -2.7800 16 1 1.9597 5.0206 -2.9919 17 6 3.9023 5.0204 -3.9233 18 6 2.9093 6.9010 -2.6484 19 1 3.2114 7.3725 -1.7251 20 6 2.4769 7.6718 -3.7068 21 7 2.1085 7.0977 -4.8312 22 14 2.4144 9.5316 -3.5435 23 1 3.7122 10.1102 -3.9747 24 1 1.3250 10.0672 -4.3989 25 1 2.1562 9.8957 -2.1272 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.4219 2.1485 34 1 3.7171 -0.1912 1.3961 35 1 5.9738 0.2439 0.4640 36 1 5.9741 0.3990 2.2375 37 1 7.2100 2.2706 1.1808 38 1 5.7567 2.8593 2.0227 39 1 5.9729 2.2909 -0.9684 40 1 5.9721 3.9041 -0.2156 41 1 3.3602 2.8879 -2.1238 42 1 4.9017 5.4003 -3.7114 43 1 3.9387 3.9352 -4.0185 44 1 3.5384 5.4552 -4.8542 45 1 1.8047 7.6399 -5.5758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597132800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:28 Heat of formation + Delta-G solvation = -87.310115 kcal Electronic energy + Delta-G solvation = -21441.854478 eV Core-core repulsion = 18457.197842 eV Total energy + Delta-G solvation = -2984.656636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.73396 -37.85722 -34.89574 -33.68495 -33.52177 -30.81956 -30.60319 -28.84116 -25.94265 -25.08738 -23.24499 -22.49549 -21.31598 -20.52811 -19.95936 -19.02318 -16.45345 -16.00332 -15.46786 -15.25967 -14.70103 -14.42691 -14.33124 -13.92308 -13.70053 -13.31010 -13.08298 -12.91625 -12.57577 -12.53203 -12.25297 -11.83698 -11.46727 -11.40783 -11.13868 -11.11483 -10.98374 -10.92330 -10.72654 -10.65721 -10.62525 -10.41714 -10.29138 -10.16522 -9.94808 -9.86225 -8.92449 -8.52204 -8.31274 -8.24141 -5.99106 -4.01767 3.36196 3.41715 3.48886 3.82447 3.98268 4.50918 4.57362 4.72251 4.86523 4.96411 5.09152 5.18254 5.24772 5.32882 5.34345 5.50821 5.52916 5.57601 5.63084 5.70758 5.73214 5.85747 5.86404 6.00800 6.05094 6.09261 6.12761 6.13830 6.25595 6.30049 6.30995 6.39957 6.50855 6.60278 6.67285 6.88114 6.98591 7.24697 7.53261 7.80491 8.04528 8.22191 8.54414 9.07530 9.35079 9.63811 11.08527 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.004856 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.541581 B = 5764.253759 C = 6549.749671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.092 4.092 5 H 0.072 0.928 6 C -0.111 4.111 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.129 4.129 10 C 0.151 3.849 11 H 0.080 0.920 12 N -0.741 5.741 13 C 0.520 3.480 14 O -0.548 6.548 15 C 0.028 3.972 16 H 0.050 0.950 17 C -0.131 4.131 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.393 0.607 42 H 0.030 0.970 43 H 0.011 0.989 44 H 0.092 0.908 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -16.452 8.508 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.111 4.111 5 H 0.090 0.910 6 C -0.149 4.149 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.168 4.168 10 C 0.046 3.954 11 H 0.099 0.901 12 N -0.394 5.394 13 C 0.310 3.690 14 O -0.424 6.424 15 C 0.007 3.993 16 H 0.068 0.932 17 C -0.189 4.189 18 C -0.537 4.537 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.727 3.273 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.227 0.773 42 H 0.049 0.951 43 H 0.030 0.970 44 H 0.110 0.890 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.675 -15.841 9.013 18.421 hybrid contribution -0.119 0.686 -0.415 0.811 sum 2.556 -15.155 8.598 17.611 Atomic orbital electron populations 1.21780 0.96097 1.01179 1.02037 1.21568 0.95684 0.97136 1.01687 1.21666 0.94465 0.96424 1.02893 1.21421 0.95483 0.95751 0.98427 0.90982 1.21592 0.95357 1.00693 0.97266 1.21561 0.95727 0.97029 1.01384 1.21496 1.00008 0.95811 0.98132 1.21920 0.96078 1.01578 0.97222 1.20785 0.92949 0.92821 0.88845 0.90146 1.46342 1.69502 1.08034 1.15529 1.21911 0.75355 0.80423 0.91331 1.90518 1.49848 1.60392 1.41606 1.18864 0.96133 0.96956 0.87318 0.93187 1.21728 0.98431 0.95997 1.02744 1.21155 1.42847 0.89654 1.00018 0.90847 1.24949 0.95235 0.98902 0.95205 1.69868 1.45055 1.35220 1.03576 0.86472 0.77522 0.85233 0.78103 1.20718 1.21336 1.19776 0.92573 0.93133 0.92861 0.92232 0.92118 0.91990 0.91232 0.91864 0.91660 0.92111 0.92277 0.92185 0.91942 0.92189 0.91308 0.77302 0.95112 0.96988 0.88958 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.15 0.37 -1.07 16 2 C -0.12 -1.17 5.69 -26.74 -0.15 -1.32 16 3 C -0.12 -1.34 4.60 -26.73 -0.12 -1.47 16 4 C -0.09 -1.04 1.77 -90.62 -0.16 -1.20 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.09 4.96 -26.72 -0.13 -1.22 16 7 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 8 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 9 C -0.13 -1.83 5.49 -26.75 -0.15 -1.98 16 10 C 0.15 2.26 1.90 -67.96 -0.13 2.13 16 11 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 12 N -0.74 -12.87 4.20 -53.83 -0.23 -13.09 16 13 C 0.52 11.90 7.11 -10.98 -0.08 11.82 16 14 O -0.55 -14.39 15.12 5.56 0.08 -14.30 16 15 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 16 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 18 C -0.50 -14.31 8.37 -34.44 -0.29 -14.60 16 19 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 21 N -0.90 -25.44 11.32 55.43 0.63 -24.81 16 22 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.39 6.04 7.81 -40.82 -0.32 5.72 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 44 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -30.47 346.60 -8.79 -39.27 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.31 Total: 3.09 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.17 Total: -12.44 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.40 Total: -37.91 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.47 -8.79 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597132800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.043 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds