Wall clock time and date at job start Mon Mar 30 2020 09:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53008 * 109.46774 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46995 * 60.00238 * 7 6 4 9 9 C 1.53000 * 109.47320 * 299.99845 * 8 7 6 10 10 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 11 11 H 1.09000 * 109.47312 * 60.00037 * 10 4 3 12 12 N 1.46493 * 109.47177 * 299.99698 * 10 4 3 13 13 C 1.34776 * 119.99944 * 155.00110 * 12 10 4 14 14 O 1.21276 * 120.00121 * 0.02562 * 13 12 10 15 15 C 1.50707 * 120.00010 * 180.02562 * 13 12 10 16 16 H 1.08999 * 109.47179 * 59.99885 * 15 13 12 17 17 C 1.53005 * 109.46773 * 299.99997 * 15 13 12 18 18 C 1.50698 * 109.46791 * 180.02562 * 15 13 12 19 19 H 1.07991 * 120.00717 * 359.97438 * 18 15 13 20 20 C 1.37883 * 119.99504 * 180.02562 * 18 15 13 21 21 N 1.31509 * 120.00424 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99822 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46916 * 89.99914 * 22 20 18 24 24 H 1.48503 * 109.47035 * 209.99722 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99811 * 22 20 18 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 30 30 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 32 32 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 34 34 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 35 35 H 1.09000 * 109.47044 * 300.00132 * 7 6 4 36 36 H 1.08998 * 109.46504 * 179.97438 * 7 6 4 37 37 H 1.08996 * 109.46657 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.46863 * 59.99768 * 8 7 6 39 39 H 1.09001 * 109.46578 * 300.00351 * 9 8 7 40 40 H 1.08993 * 109.47427 * 179.97438 * 9 8 7 41 41 H 0.96996 * 119.99998 * 335.00005 * 12 10 4 42 42 H 1.08999 * 109.47177 * 299.99889 * 17 15 13 43 43 H 1.08997 * 109.46864 * 60.00057 * 17 15 13 44 44 H 1.09003 * 109.46717 * 180.02562 * 17 15 13 45 45 H 0.96993 * 120.00612 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 5.6105 0.8330 1.3061 8 6 6.1200 2.2702 1.1806 9 6 5.6095 2.8801 -0.1264 10 6 4.0800 2.8794 -0.1264 11 1 3.7170 3.4687 0.7157 12 7 3.5912 3.4633 -1.3779 13 6 3.4625 4.7999 -1.4928 14 8 3.7517 5.5194 -0.5603 15 6 2.9591 5.4006 -2.7800 16 1 1.9597 5.0206 -2.9919 17 6 3.9023 5.0204 -3.9233 18 6 2.9093 6.9010 -2.6484 19 1 3.2114 7.3725 -1.7251 20 6 2.4769 7.6718 -3.7068 21 7 2.1085 7.0977 -4.8312 22 14 2.4144 9.5316 -3.5435 23 1 3.7122 10.1102 -3.9747 24 1 1.3250 10.0672 -4.3989 25 1 2.1562 9.8957 -2.1272 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7175 1.4219 2.1485 34 1 3.7171 -0.1912 1.3961 35 1 5.9738 0.2439 0.4640 36 1 5.9741 0.3990 2.2375 37 1 7.2100 2.2706 1.1808 38 1 5.7567 2.8593 2.0227 39 1 5.9729 2.2909 -0.9684 40 1 5.9721 3.9041 -0.2156 41 1 3.3602 2.8879 -2.1238 42 1 4.9017 5.4003 -3.7114 43 1 3.9387 3.9352 -4.0185 44 1 3.5384 5.4552 -4.8542 45 1 1.8047 7.6399 -5.5758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597132800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:27 Heat of formation + Delta-G solvation = -104.280075 kcal Electronic energy + Delta-G solvation = -21442.590350 eV Core-core repulsion = 18457.197842 eV Total energy + Delta-G solvation = -2985.392509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11296 -39.33532 -35.82476 -35.69814 -35.01283 -32.57386 -31.68179 -30.12466 -27.21157 -26.88162 -24.76273 -23.64658 -22.50375 -21.47524 -21.19794 -20.52075 -18.38406 -17.77662 -17.05159 -16.46009 -16.10384 -15.87911 -15.62642 -15.01007 -14.93605 -14.76998 -14.31450 -14.08746 -14.00335 -13.74203 -13.51540 -13.27651 -12.97272 -12.75739 -12.68988 -12.58913 -12.27423 -12.24028 -12.08719 -12.01519 -11.94721 -11.83039 -11.53009 -11.36222 -11.18549 -11.05380 -10.91217 -10.57647 -10.22775 -9.82164 -8.15362 -6.25571 1.39445 1.39822 1.52018 1.98054 2.36791 2.56419 3.13917 3.59747 3.78692 3.93829 4.11821 4.22422 4.30419 4.32912 4.37210 4.45402 4.53974 4.58648 4.62390 4.74675 4.76289 4.81630 4.89681 4.94879 5.00276 5.02941 5.07093 5.13811 5.18837 5.22321 5.24744 5.31241 5.35224 5.41507 5.45862 5.49823 5.54994 5.59338 5.71562 5.79177 5.95264 6.22332 6.76840 6.89491 7.40437 7.60514 8.90435 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.004856 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.541581 B = 5764.253759 C = 6549.749671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.081 4.081 5 H 0.089 0.911 6 C -0.108 4.108 7 C -0.114 4.114 8 C -0.114 4.114 9 C -0.126 4.126 10 C 0.149 3.851 11 H 0.050 0.950 12 N -0.719 5.719 13 C 0.522 3.478 14 O -0.590 6.590 15 C 0.024 3.976 16 H 0.039 0.961 17 C -0.117 4.117 18 C -0.528 4.528 19 H 0.046 0.954 20 C 0.020 3.980 21 N -0.911 5.911 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.280 1.280 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.407 0.593 42 H 0.020 0.980 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.015 -18.872 8.581 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.154 4.154 4 C -0.100 4.100 5 H 0.107 0.893 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.152 4.152 9 C -0.165 4.165 10 C 0.045 3.955 11 H 0.069 0.931 12 N -0.371 5.371 13 C 0.311 3.689 14 O -0.470 6.470 15 C 0.003 3.997 16 H 0.056 0.944 17 C -0.175 4.175 18 C -0.567 4.567 19 H 0.064 0.936 20 C -0.179 4.179 21 N -0.550 5.550 22 Si 0.780 3.220 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.205 1.205 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.242 0.758 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.137 -18.319 9.067 20.679 hybrid contribution -0.286 1.420 -0.431 1.512 sum 2.852 -16.898 8.636 19.190 Atomic orbital electron populations 1.21798 0.96240 1.01937 1.01332 1.21527 0.95543 0.95437 1.02876 1.21648 0.94600 0.97857 1.01324 1.21382 0.95261 0.93022 1.00337 0.89276 1.21606 0.95728 1.01660 0.95626 1.21546 0.95220 0.95365 1.02977 1.21490 1.00742 0.97092 0.95856 1.21869 0.95120 0.99847 0.99616 1.20992 0.93732 0.94605 0.86219 0.93145 1.46083 1.67771 1.06261 1.16999 1.21486 0.75319 0.82051 0.90048 1.90494 1.52025 1.61888 1.42583 1.18801 0.96120 0.95518 0.89309 0.94363 1.21533 0.97002 0.98370 1.00606 1.21281 1.44095 0.91911 0.99388 0.93581 1.25590 0.94670 1.02822 0.94859 1.69942 1.44713 1.36552 1.03798 0.85611 0.78101 0.80522 0.77741 1.19949 1.19830 1.20509 0.93643 0.91623 0.93299 0.91243 0.90576 0.93355 0.93161 0.92653 0.89192 0.90855 0.90332 0.90978 0.93027 0.90791 0.95166 0.75754 0.96064 0.93013 0.91127 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.12 -1.90 5.69 30.59 0.17 -1.72 16 3 C -0.12 -2.53 4.60 30.59 0.14 -2.39 16 4 C -0.08 -1.68 1.77 -10.79 -0.02 -1.70 16 5 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 6 C -0.11 -1.80 4.96 30.60 0.15 -1.65 16 7 C -0.11 -1.78 5.92 30.60 0.18 -1.60 16 8 C -0.11 -2.43 5.92 30.60 0.18 -2.24 16 9 C -0.13 -3.51 5.49 30.58 0.17 -3.34 16 10 C 0.15 4.43 1.90 44.98 0.09 4.51 16 11 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 12 N -0.72 -25.08 4.20 -442.61 -1.86 -26.94 16 13 C 0.52 24.68 7.11 87.66 0.62 25.30 16 14 O -0.59 -32.62 15.12 -3.02 -0.05 -32.66 16 15 C 0.02 1.22 2.64 -12.28 -0.03 1.19 16 16 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 18 C -0.53 -31.40 8.37 25.60 0.21 -31.19 16 19 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 20 C 0.02 1.12 5.30 84.66 0.45 1.57 16 21 N -0.91 -51.88 11.32 21.45 0.24 -51.63 16 22 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.03 6.57 -2.39 -0.02 1.02 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.27 7.30 -2.39 -0.02 1.26 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.12 6.57 -2.39 -0.02 1.11 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.41 12.04 7.81 -92.71 -0.72 11.31 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16 44 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 45 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -68.26 346.60 4.25 -64.01 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.22 Total: 19.39 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.67 Total: -20.00 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.62 Total: -78.57 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.26 4.25 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597132800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.271 kcal (2) G-P(sol) polarization free energy of solvation -68.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds