Wall clock time and date at job start Mon Mar 30 2020 09:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47194 * 54.99781 * 4 3 2 6 6 C 1.53006 * 109.47127 * 294.99938 * 4 3 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46817 * 60.00361 * 7 6 4 9 9 C 1.52996 * 109.46972 * 299.99733 * 8 7 6 10 10 C 1.52997 * 109.47131 * 60.00459 * 9 8 7 11 11 H 1.09002 * 109.47153 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.46983 * 59.99859 * 10 9 8 13 13 C 1.34773 * 120.00128 * 85.00506 * 12 10 9 14 14 O 1.21284 * 120.00113 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00116 * 179.97438 * 13 12 10 16 16 H 1.09000 * 109.47270 * 299.99689 * 15 13 12 17 17 C 1.53000 * 109.47143 * 59.99624 * 15 13 12 18 18 C 1.50699 * 109.47298 * 179.97438 * 15 13 12 19 19 H 1.08001 * 120.00294 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00259 * 179.97438 * 18 15 13 21 21 N 1.31520 * 119.99773 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00097 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46843 * 90.00231 * 22 20 18 24 24 H 1.48503 * 109.46780 * 210.00131 * 22 20 18 25 25 H 1.48494 * 109.47293 * 330.00058 * 22 20 18 26 26 H 1.09001 * 109.46969 * 59.99165 * 1 2 3 27 27 H 1.08996 * 109.47485 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46869 * 300.00504 * 1 2 3 29 29 H 1.08998 * 109.46957 * 240.00278 * 2 1 3 30 30 H 1.09000 * 109.47241 * 120.00359 * 2 1 3 31 31 H 1.09006 * 109.46717 * 59.99915 * 3 2 1 32 32 H 1.09000 * 109.47227 * 300.00367 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 6 4 3 34 34 H 1.09001 * 109.46998 * 59.99868 * 6 4 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.46952 * 300.00302 * 7 6 4 37 37 H 1.08996 * 109.47407 * 60.00219 * 8 7 6 38 38 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.46993 * 180.02562 * 9 8 7 40 40 H 1.09000 * 109.47380 * 299.99696 * 9 8 7 41 41 H 0.97001 * 119.99679 * 264.99221 * 12 10 9 42 42 H 1.09007 * 109.47091 * 300.00338 * 17 15 13 43 43 H 1.09000 * 109.46985 * 59.99890 * 17 15 13 44 44 H 1.09004 * 109.47197 * 180.02562 * 17 15 13 45 45 H 0.96998 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0806 0.8325 1.3065 7 6 5.6106 0.8330 1.3061 8 6 6.1200 2.2703 1.1807 9 6 5.6095 2.8801 -0.1263 10 6 4.0795 2.8796 -0.1259 11 1 3.7158 3.3145 -1.0569 12 7 3.5913 3.6713 1.0059 13 6 3.4620 5.0076 0.8876 14 8 3.7503 5.5548 -0.1557 15 6 2.9591 5.8220 2.0517 16 1 1.9600 5.4842 2.3268 17 6 3.9031 5.6459 3.2429 18 6 2.9085 7.2769 1.6623 19 1 3.2106 7.5816 0.6712 20 6 2.4764 8.2193 2.5714 21 7 2.1090 7.8484 3.7785 22 14 2.4143 10.0228 2.0889 23 1 1.0833 10.3344 1.5087 24 1 2.6397 10.8648 3.2912 25 1 3.4705 10.3029 1.0834 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7176 1.4219 2.1485 34 1 3.7172 -0.1912 1.3960 35 1 5.9743 0.3982 2.2371 36 1 5.9739 0.2440 0.4640 37 1 5.7567 2.8593 2.0228 38 1 7.2100 2.2707 1.1809 39 1 5.9728 3.9039 -0.2158 40 1 5.9729 2.2911 -0.9684 41 1 3.3608 3.2337 1.8403 42 1 3.9401 4.5935 3.5246 43 1 4.9022 5.9837 2.9677 44 1 3.5391 6.2346 4.0850 45 1 1.8047 8.5113 4.4179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597132802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:37 Heat of formation + Delta-G solvation = -84.299349 kcal Electronic energy + Delta-G solvation = -21734.658052 eV Core-core repulsion = 18750.131972 eV Total energy + Delta-G solvation = -2984.526079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.93978 -37.72187 -34.90102 -33.67315 -33.04190 -30.82203 -30.62847 -29.12518 -25.92001 -25.08291 -23.12218 -22.50478 -21.82942 -20.50197 -19.75649 -18.58260 -16.31379 -16.13158 -15.37134 -15.25597 -14.85186 -14.54911 -14.38062 -13.92930 -13.50795 -13.31744 -13.02635 -12.85574 -12.56153 -12.40099 -12.03240 -11.92543 -11.69807 -11.41329 -11.31388 -11.09431 -10.97130 -10.88548 -10.68832 -10.66167 -10.57977 -10.43293 -10.21092 -10.02697 -9.91627 -9.77507 -8.92345 -8.51839 -8.29815 -8.22822 -5.98900 -4.01425 3.36279 3.41773 3.49144 3.84468 4.05190 4.51580 4.60732 4.73443 4.82788 4.99178 5.07668 5.19579 5.29105 5.34452 5.37618 5.52858 5.57244 5.61126 5.66917 5.71274 5.79920 5.83409 5.88056 5.98618 6.05774 6.10840 6.13549 6.22239 6.26407 6.32557 6.39882 6.45742 6.53738 6.55278 6.67504 6.88216 6.98978 7.27536 7.53651 7.80712 8.04979 8.22992 8.55701 9.07893 9.36851 9.64197 11.08756 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.005150 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.604919 B = 5435.854308 C = 6036.624212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.091 4.091 5 H 0.077 0.923 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.129 4.129 10 C 0.151 3.849 11 H 0.080 0.920 12 N -0.736 5.736 13 C 0.520 3.480 14 O -0.549 6.549 15 C 0.028 3.972 16 H 0.050 0.950 17 C -0.130 4.130 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.057 3.943 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.273 1.273 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.393 0.607 42 H 0.010 0.990 43 H 0.030 0.970 44 H 0.092 0.908 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -17.495 -3.635 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.110 4.110 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.168 4.168 10 C 0.045 3.955 11 H 0.098 0.902 12 N -0.390 5.390 13 C 0.309 3.691 14 O -0.425 6.425 15 C 0.007 3.993 16 H 0.067 0.933 17 C -0.188 4.188 18 C -0.536 4.536 19 H 0.091 0.909 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.727 3.273 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.198 1.198 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.228 0.772 42 H 0.029 0.971 43 H 0.049 0.951 44 H 0.110 0.890 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.684 -16.992 -4.238 17.717 hybrid contribution -0.144 0.739 0.234 0.789 sum 2.540 -16.252 -4.004 16.930 Atomic orbital electron populations 1.21781 0.96111 1.01159 1.02042 1.21573 0.95668 0.97168 1.01676 1.21649 0.94485 0.96341 1.02845 1.21427 0.95448 0.95682 0.98479 0.90493 1.21636 0.95533 1.00641 0.97548 1.21529 0.95605 0.97078 1.01256 1.21490 0.99684 0.95721 0.98699 1.21897 0.96079 1.01485 0.97311 1.20767 0.93021 0.90143 0.91554 0.90164 1.46353 1.69339 1.07834 1.15521 1.21896 0.75375 0.80956 0.90855 1.90517 1.49944 1.71035 1.30997 1.18854 0.96097 0.95142 0.89181 0.93260 1.21722 0.98441 0.97273 1.01386 1.21154 1.42807 0.89923 0.99722 0.90855 1.24950 0.95279 0.99174 0.94904 1.69877 1.45076 1.33857 1.04930 0.86472 0.78484 0.84524 0.77847 1.20723 1.21353 1.19789 0.92836 0.93147 0.92606 0.92421 0.91944 0.91431 0.91905 0.91866 0.91786 0.92325 0.92343 0.91451 0.92567 0.91329 0.92031 0.77239 0.97086 0.95095 0.88982 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.12 -1.32 4.45 -26.73 -0.12 -1.43 16 4 C -0.09 -1.03 1.98 -90.62 -0.18 -1.21 16 5 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.12 -1.18 4.79 -26.73 -0.13 -1.31 16 7 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 8 C -0.12 -1.46 5.77 -26.73 -0.15 -1.62 16 9 C -0.13 -1.80 5.60 -26.73 -0.15 -1.95 16 10 C 0.15 2.22 2.23 -67.93 -0.15 2.07 16 11 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 12 N -0.74 -12.61 3.51 -53.81 -0.19 -12.80 16 13 C 0.52 11.80 7.11 -10.99 -0.08 11.72 16 14 O -0.55 -14.34 15.12 5.55 0.08 -14.25 16 15 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 16 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.13 -3.01 8.86 37.16 0.33 -2.68 16 18 C -0.50 -14.27 8.37 -34.44 -0.29 -14.55 16 19 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 21 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 22 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.69 6.50 -51.93 -0.34 0.36 16 34 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.39 6.07 6.08 -40.82 -0.25 5.83 16 42 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -30.28 342.49 -8.68 -38.96 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.14 Total: 3.39 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.20 Total: -12.71 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.44 Total: -37.60 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.28 -8.68 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597132802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.342 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds