Wall clock time and date at job start Mon Mar 30 2020 09:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47379 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.47194 * 54.99781 * 4 3 2 6 6 C 1.53006 * 109.47127 * 294.99938 * 4 3 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.46817 * 60.00361 * 7 6 4 9 9 C 1.52996 * 109.46972 * 299.99733 * 8 7 6 10 10 C 1.52997 * 109.47131 * 60.00459 * 9 8 7 11 11 H 1.09002 * 109.47153 * 179.97438 * 10 9 8 12 12 N 1.46497 * 109.46983 * 59.99859 * 10 9 8 13 13 C 1.34773 * 120.00128 * 85.00506 * 12 10 9 14 14 O 1.21284 * 120.00113 * 359.97438 * 13 12 10 15 15 C 1.50701 * 120.00116 * 179.97438 * 13 12 10 16 16 H 1.09000 * 109.47270 * 299.99689 * 15 13 12 17 17 C 1.53000 * 109.47143 * 59.99624 * 15 13 12 18 18 C 1.50699 * 109.47298 * 179.97438 * 15 13 12 19 19 H 1.08001 * 120.00294 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00259 * 179.97438 * 18 15 13 21 21 N 1.31520 * 119.99773 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00097 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46843 * 90.00231 * 22 20 18 24 24 H 1.48503 * 109.46780 * 210.00131 * 22 20 18 25 25 H 1.48494 * 109.47293 * 330.00058 * 22 20 18 26 26 H 1.09001 * 109.46969 * 59.99165 * 1 2 3 27 27 H 1.08996 * 109.47485 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46869 * 300.00504 * 1 2 3 29 29 H 1.08998 * 109.46957 * 240.00278 * 2 1 3 30 30 H 1.09000 * 109.47241 * 120.00359 * 2 1 3 31 31 H 1.09006 * 109.46717 * 59.99915 * 3 2 1 32 32 H 1.09000 * 109.47227 * 300.00367 * 3 2 1 33 33 H 1.09001 * 109.46801 * 300.00272 * 6 4 3 34 34 H 1.09001 * 109.46998 * 59.99868 * 6 4 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 7 6 4 36 36 H 1.08996 * 109.46952 * 300.00302 * 7 6 4 37 37 H 1.08996 * 109.47407 * 60.00219 * 8 7 6 38 38 H 1.09000 * 109.46986 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.46993 * 180.02562 * 9 8 7 40 40 H 1.09000 * 109.47380 * 299.99696 * 9 8 7 41 41 H 0.97001 * 119.99679 * 264.99221 * 12 10 9 42 42 H 1.09007 * 109.47091 * 300.00338 * 17 15 13 43 43 H 1.09000 * 109.46985 * 59.99890 * 17 15 13 44 44 H 1.09004 * 109.47197 * 180.02562 * 17 15 13 45 45 H 0.96998 * 119.99772 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0806 0.8325 1.3065 7 6 5.6106 0.8330 1.3061 8 6 6.1200 2.2703 1.1807 9 6 5.6095 2.8801 -0.1263 10 6 4.0795 2.8796 -0.1259 11 1 3.7158 3.3145 -1.0569 12 7 3.5913 3.6713 1.0059 13 6 3.4620 5.0076 0.8876 14 8 3.7503 5.5548 -0.1557 15 6 2.9591 5.8220 2.0517 16 1 1.9600 5.4842 2.3268 17 6 3.9031 5.6459 3.2429 18 6 2.9085 7.2769 1.6623 19 1 3.2106 7.5816 0.6712 20 6 2.4764 8.2193 2.5714 21 7 2.1090 7.8484 3.7785 22 14 2.4143 10.0228 2.0889 23 1 1.0833 10.3344 1.5087 24 1 2.6397 10.8648 3.2912 25 1 3.4705 10.3029 1.0834 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.7176 1.4219 2.1485 34 1 3.7172 -0.1912 1.3960 35 1 5.9743 0.3982 2.2371 36 1 5.9739 0.2440 0.4640 37 1 5.7567 2.8593 2.0228 38 1 7.2100 2.2707 1.1809 39 1 5.9728 3.9039 -0.2158 40 1 5.9729 2.2911 -0.9684 41 1 3.3608 3.2337 1.8403 42 1 3.9401 4.5935 3.5246 43 1 4.9022 5.9837 2.9677 44 1 3.5391 6.2346 4.0850 45 1 1.8047 8.5113 4.4179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597132802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:36 Heat of formation + Delta-G solvation = -100.718562 kcal Electronic energy + Delta-G solvation = -21735.370042 eV Core-core repulsion = 18750.131972 eV Total energy + Delta-G solvation = -2985.238070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28557 -39.25939 -35.82838 -35.71896 -34.49754 -32.55943 -31.67225 -30.45036 -27.21508 -26.85681 -24.70345 -23.67267 -22.81958 -21.52509 -21.24786 -19.89181 -18.30813 -17.90577 -16.77320 -16.36952 -16.24264 -16.04629 -15.78156 -15.01871 -14.91113 -14.74550 -14.32433 -14.10031 -13.84441 -13.63099 -13.38026 -13.09674 -12.99242 -12.94637 -12.66344 -12.60775 -12.58669 -12.19979 -12.16388 -12.01217 -11.92932 -11.78150 -11.43338 -11.35022 -11.06030 -11.02715 -10.77567 -10.58515 -10.24436 -9.79014 -8.15112 -6.25177 1.39534 1.39889 1.52209 2.00557 2.38254 2.60406 3.14263 3.63711 3.80389 3.87621 4.14519 4.20575 4.31112 4.36816 4.39306 4.46508 4.60773 4.63332 4.69755 4.74250 4.76230 4.80947 4.86452 4.94335 5.00478 5.02993 5.07869 5.13398 5.16783 5.23523 5.27712 5.35375 5.39107 5.43096 5.49502 5.50337 5.56082 5.60447 5.72248 5.81984 5.95506 6.22684 6.77581 6.90559 7.40979 7.62643 8.90753 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.005150 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.604919 B = 5435.854308 C = 6036.624212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.080 4.080 5 H 0.098 0.902 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.126 4.126 10 C 0.146 3.854 11 H 0.053 0.947 12 N -0.712 5.712 13 C 0.521 3.479 14 O -0.591 6.591 15 C 0.024 3.976 16 H 0.037 0.963 17 C -0.115 4.115 18 C -0.527 4.527 19 H 0.046 0.954 20 C 0.019 3.981 21 N -0.911 5.911 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.280 1.280 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.086 0.914 41 H 0.404 0.596 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.070 0.930 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -19.901 -3.214 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.099 4.099 5 H 0.116 0.884 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.165 4.165 10 C 0.042 3.958 11 H 0.071 0.929 12 N -0.365 5.365 13 C 0.310 3.690 14 O -0.471 6.471 15 C 0.002 3.998 16 H 0.055 0.945 17 C -0.173 4.173 18 C -0.566 4.566 19 H 0.064 0.936 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.780 3.220 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.205 1.205 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.241 0.759 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.087 -19.451 -3.787 20.055 hybrid contribution -0.285 1.459 0.084 1.489 sum 2.802 -17.992 -3.703 18.582 Atomic orbital electron populations 1.21801 0.96290 1.01911 1.01325 1.21530 0.95500 0.95478 1.02873 1.21632 0.94663 0.97771 1.01253 1.21382 0.95171 0.92992 1.00321 0.88377 1.21659 0.95749 1.01713 0.96057 1.21504 0.95230 0.95251 1.02810 1.21482 1.00305 0.97114 0.96538 1.21856 0.95112 0.99904 0.99585 1.20988 0.93837 0.91864 0.89153 0.92864 1.46070 1.67535 1.06105 1.16818 1.21458 0.75382 0.82618 0.89529 1.90493 1.52135 1.72307 1.32138 1.18791 0.96035 0.94100 0.90838 0.94512 1.21515 0.97015 0.99272 0.99530 1.21279 1.44023 0.92322 0.98933 0.93559 1.25595 0.94718 1.02764 0.94897 1.69952 1.44747 1.35067 1.05284 0.85608 0.78370 0.80176 0.77799 1.20005 1.19836 1.20489 0.93543 0.91642 0.93430 0.91194 0.90616 0.93025 0.93644 0.92770 0.89292 0.90842 0.90642 0.93454 0.91639 0.95181 0.89594 0.75913 0.93275 0.96063 0.91152 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.91 71.98 0.71 -1.91 16 2 C -0.12 -1.87 5.69 30.60 0.17 -1.69 16 3 C -0.12 -2.47 4.45 30.59 0.14 -2.34 16 4 C -0.08 -1.61 1.98 -10.79 -0.02 -1.63 16 5 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.11 -1.92 4.79 30.60 0.15 -1.78 16 7 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 8 C -0.12 -2.66 5.77 30.59 0.18 -2.48 16 9 C -0.13 -3.44 5.60 30.59 0.17 -3.27 16 10 C 0.15 4.27 2.23 44.99 0.10 4.37 16 11 H 0.05 1.86 7.58 -2.39 -0.02 1.85 16 12 N -0.71 -24.65 3.51 -442.54 -1.55 -26.21 16 13 C 0.52 24.55 7.11 87.66 0.62 25.18 16 14 O -0.59 -32.47 15.12 -3.04 -0.05 -32.52 16 15 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 16 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 17 C -0.12 -5.38 8.86 71.98 0.64 -4.74 16 18 C -0.53 -31.32 8.37 25.60 0.21 -31.10 16 19 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 20 C 0.02 1.10 5.30 84.65 0.45 1.55 16 21 N -0.91 -51.95 11.32 21.45 0.24 -51.70 16 22 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.04 6.57 -2.39 -0.02 1.03 16 31 H 0.05 1.26 7.61 -2.38 -0.02 1.24 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.03 6.50 -2.39 -0.02 1.01 16 34 H 0.09 1.14 6.57 -2.39 -0.02 1.13 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.40 12.24 6.08 -92.71 -0.56 11.68 16 42 H 0.05 1.85 7.56 -2.38 -0.02 1.84 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 3.62 6.07 -2.38 -0.01 3.60 16 45 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -67.83 342.49 4.72 -63.10 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.38 Total: 19.78 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 3.67 Total: -20.31 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.31 Total: -77.91 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.83 4.72 -63.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597132802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.614 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds