Wall clock time and date at job start Mon Mar 30 2020 07:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47168 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47168 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.43357 * 56.09387 * 5 4 3 7 7 C 1.54263 * 110.49188 * 293.55170 * 5 4 3 8 8 C 1.53876 * 106.59994 * 217.71126 * 7 5 4 9 9 C 1.54263 * 106.59914 * 359.97438 * 8 7 5 10 10 C 1.54889 * 110.48749 * 178.77263 * 5 4 3 11 11 H 1.09004 * 110.75592 * 38.31306 * 10 5 4 12 12 N 1.46501 * 110.75888 * 274.93736 * 10 5 4 13 13 C 1.34774 * 120.00017 * 154.99387 * 12 10 5 14 14 O 1.21287 * 120.00081 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00217 * 180.02562 * 13 12 10 16 16 H 1.09005 * 109.46896 * 60.00365 * 15 13 12 17 17 C 1.53004 * 109.47052 * 300.00861 * 15 13 12 18 18 C 1.50699 * 109.47440 * 180.02562 * 15 13 12 19 19 H 1.07997 * 119.99724 * 35.10404 * 18 15 13 20 20 C 1.37883 * 119.99817 * 215.10985 * 18 15 13 21 21 N 1.31512 * 119.99755 * 184.90976 * 20 18 15 22 22 Si 1.86793 * 120.00205 * 4.90380 * 20 18 15 23 23 H 1.48499 * 109.47279 * 84.82437 * 22 20 18 24 24 H 1.48495 * 109.47334 * 204.82535 * 22 20 18 25 25 H 1.48498 * 109.47279 * 324.82431 * 22 20 18 26 26 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47156 * 299.99530 * 1 2 3 28 28 H 1.09000 * 109.47419 * 59.99244 * 1 2 3 29 29 H 1.09000 * 109.47143 * 120.00281 * 2 1 3 30 30 H 1.08999 * 109.46602 * 240.00340 * 2 1 3 31 31 H 1.09000 * 109.47568 * 300.00665 * 3 2 1 32 32 H 1.09008 * 109.47155 * 60.00464 * 3 2 1 33 33 H 1.09000 * 109.47419 * 300.00756 * 4 3 2 34 34 H 1.08999 * 109.46602 * 60.00340 * 4 3 2 35 35 H 1.09008 * 110.02654 * 336.99512 * 7 5 4 36 36 H 1.08994 * 110.03541 * 98.37612 * 7 5 4 37 37 H 1.09007 * 110.03045 * 119.28385 * 8 7 5 38 38 H 1.08993 * 110.03151 * 240.70936 * 8 7 5 39 39 H 1.08999 * 110.48537 * 142.28470 * 9 8 7 40 40 H 1.08996 * 110.48268 * 264.93240 * 9 8 7 41 41 H 0.97002 * 120.00005 * 335.00129 * 12 10 5 42 42 H 1.09006 * 109.47001 * 175.06939 * 17 15 13 43 43 H 1.09001 * 109.46707 * 295.06499 * 17 15 13 44 44 H 1.09002 * 109.47384 * 55.06966 * 17 15 13 45 45 H 0.96998 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6700 3.4339 0.8464 7 6 3.7151 3.5861 -1.3260 8 6 4.9088 4.4862 -1.6903 9 6 5.9572 4.3010 -0.5739 10 6 5.6283 2.9125 0.0291 11 1 6.0411 2.1150 -0.5888 12 7 6.1225 2.8140 1.4048 13 6 7.3549 2.3240 1.6446 14 8 8.0550 1.9650 0.7216 15 6 7.8630 2.2222 3.0597 16 1 7.2046 1.5724 3.6363 17 6 7.8888 3.6144 3.6938 18 6 9.2563 1.6478 3.0531 19 1 9.9363 1.8898 2.2498 20 6 9.6627 0.8132 4.0726 21 7 10.9068 0.3894 4.1190 22 14 8.4463 0.2846 5.3880 23 1 7.6841 -0.8973 4.9111 24 1 9.1815 -0.0683 6.6290 25 1 7.5063 1.3991 5.6695 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.9338 0.9284 0.8890 34 1 3.9329 0.9288 -0.8909 35 1 3.5538 2.8448 -2.1087 36 1 2.8176 4.1903 -1.1938 37 1 5.3268 4.1817 -2.6499 38 1 4.5911 5.5279 -1.7347 39 1 6.9640 4.3064 -0.9915 40 1 5.8521 5.0801 0.1811 41 1 5.5627 3.1013 2.1430 42 1 8.1723 3.5306 4.7430 43 1 8.6131 4.2386 3.1704 44 1 6.8994 4.0657 3.6198 45 1 11.1929 -0.1974 4.8364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597133266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:51 Heat of formation + Delta-G solvation = -85.216660 kcal Electronic energy + Delta-G solvation = -21011.176849 eV Core-core repulsion = 18026.610993 eV Total energy + Delta-G solvation = -2984.565857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55401 -37.86639 -35.48625 -33.59746 -33.05587 -31.42234 -31.14914 -27.48300 -27.13125 -25.21679 -23.39990 -22.33219 -21.36844 -20.21098 -20.04673 -18.91071 -17.04541 -16.37965 -15.86029 -15.49663 -14.92749 -14.42079 -14.23151 -13.90273 -13.72937 -13.67343 -13.13582 -12.83297 -12.58156 -12.40565 -12.33021 -12.15748 -11.81746 -11.60209 -11.34415 -11.23098 -11.16210 -11.08669 -10.86285 -10.73428 -10.62469 -10.46865 -10.43768 -10.36831 -10.19464 -9.78313 -9.13538 -8.63838 -8.48719 -8.37221 -6.03787 -4.02574 3.26152 3.32479 3.35211 3.69618 3.87982 4.40740 4.43505 4.62582 4.72526 4.87341 4.89553 4.97972 5.20835 5.27451 5.34454 5.43301 5.48518 5.52733 5.55047 5.62900 5.63324 5.73833 5.76810 5.89462 5.89954 5.93326 5.98206 6.02922 6.06984 6.16908 6.18801 6.27877 6.29819 6.37451 6.40445 6.48634 6.57658 6.87098 7.15620 7.21890 7.59986 8.24713 8.59219 9.12250 9.24872 9.56286 11.09713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.004976 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.668923 B = 5625.622602 C = 6758.971856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.098 4.098 6 H 0.076 0.924 7 C -0.115 4.115 8 C -0.123 4.123 9 C -0.136 4.136 10 C 0.145 3.855 11 H 0.092 0.908 12 N -0.741 5.741 13 C 0.519 3.481 14 O -0.531 6.531 15 C -0.006 4.006 16 H 0.053 0.947 17 C -0.133 4.133 18 C -0.493 4.493 19 H 0.085 0.915 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.872 3.128 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.392 0.608 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.026 0.974 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.675 5.621 -7.517 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.151 4.151 5 C -0.117 4.117 6 H 0.095 0.905 7 C -0.153 4.153 8 C -0.161 4.161 9 C -0.175 4.175 10 C 0.039 3.961 11 H 0.110 0.890 12 N -0.394 5.394 13 C 0.308 3.692 14 O -0.405 6.405 15 C -0.027 4.027 16 H 0.071 0.929 17 C -0.191 4.191 18 C -0.531 4.531 19 H 0.103 0.897 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.699 3.301 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.226 0.774 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.982 5.216 -8.085 22.178 hybrid contribution -0.848 -0.226 1.128 1.429 sum -20.831 4.990 -6.957 22.521 Atomic orbital electron populations 1.21776 0.96152 1.01403 1.01598 1.21553 0.95557 0.97245 1.02144 1.21622 0.95561 0.96474 1.01834 1.21648 0.94966 0.95869 1.02629 1.22250 0.94959 0.96236 0.98236 0.90535 1.22137 0.97907 0.98460 0.96798 1.22074 0.95725 0.99446 0.98827 1.22753 0.99224 0.97740 0.97815 1.21866 0.92157 0.97339 0.84716 0.88980 1.46306 1.18086 1.67727 1.07285 1.21725 0.79567 0.74550 0.93379 1.90574 1.56161 1.47211 1.46533 1.19344 0.98903 0.95656 0.88835 0.92929 1.21941 0.98562 0.97493 1.01077 1.20760 0.95001 1.27891 1.09497 0.89670 1.25030 0.95048 0.95636 0.97365 1.69886 1.15891 1.34491 1.33142 0.86958 0.81844 0.79504 0.81812 1.20173 1.21303 1.18972 0.92966 0.92869 0.92920 0.91991 0.92106 0.92061 0.92209 0.91573 0.91815 0.91620 0.91929 0.91865 0.92040 0.91271 0.91514 0.77398 0.92821 0.92973 0.95535 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.04 5.06 -26.73 -0.14 -1.18 16 4 C -0.11 -1.22 4.60 -26.73 -0.12 -1.34 16 5 C -0.10 -1.06 2.52 -88.96 -0.22 -1.28 16 6 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 7 C -0.12 -1.08 5.50 -25.61 -0.14 -1.22 16 8 C -0.12 -1.26 6.80 -25.61 -0.17 -1.44 16 9 C -0.14 -1.80 6.51 -25.06 -0.16 -1.96 16 10 C 0.14 2.09 2.69 -65.92 -0.18 1.91 16 11 H 0.09 1.56 7.47 -51.93 -0.39 1.17 16 12 N -0.74 -12.23 5.04 -51.86 -0.26 -12.49 16 13 C 0.52 11.51 7.15 -10.99 -0.08 11.44 16 14 O -0.53 -13.99 15.42 5.55 0.09 -13.90 16 15 C -0.01 -0.13 2.30 -92.92 -0.21 -0.34 16 16 H 0.05 1.20 5.29 -51.93 -0.27 0.92 16 17 C -0.13 -2.66 9.12 37.16 0.34 -2.33 16 18 C -0.49 -14.32 8.36 -34.44 -0.29 -14.61 16 19 H 0.09 2.81 7.61 -52.49 -0.40 2.41 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 22 Si 0.87 21.12 26.99 -169.99 -4.59 16.53 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.26 -5.91 6.82 56.52 0.39 -5.52 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 7.48 -51.93 -0.39 0.12 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.07 0.60 7.77 -51.92 -0.40 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.39 5.45 7.93 -40.82 -0.32 5.13 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.42 7.43 -51.93 -0.39 0.04 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -32.58 353.71 -8.40 -40.98 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.47 Total: 3.10 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.27 Total: -12.46 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.51 Total: -39.58 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.58 -8.40 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597133266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.239 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds