Wall clock time and date at job start Mon Mar 30 2020 07:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47168 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47168 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.43357 * 56.09387 * 5 4 3 7 7 C 1.54263 * 110.49188 * 293.55170 * 5 4 3 8 8 C 1.53876 * 106.59994 * 217.71126 * 7 5 4 9 9 C 1.54263 * 106.59914 * 359.97438 * 8 7 5 10 10 C 1.54889 * 110.48749 * 178.77263 * 5 4 3 11 11 H 1.09004 * 110.75592 * 38.31306 * 10 5 4 12 12 N 1.46501 * 110.75888 * 274.93736 * 10 5 4 13 13 C 1.34774 * 120.00017 * 154.99387 * 12 10 5 14 14 O 1.21287 * 120.00081 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00217 * 180.02562 * 13 12 10 16 16 H 1.09005 * 109.46896 * 60.00365 * 15 13 12 17 17 C 1.53004 * 109.47052 * 300.00861 * 15 13 12 18 18 C 1.50699 * 109.47440 * 180.02562 * 15 13 12 19 19 H 1.07997 * 119.99724 * 35.10404 * 18 15 13 20 20 C 1.37883 * 119.99817 * 215.10985 * 18 15 13 21 21 N 1.31512 * 119.99755 * 184.90976 * 20 18 15 22 22 Si 1.86793 * 120.00205 * 4.90380 * 20 18 15 23 23 H 1.48499 * 109.47279 * 84.82437 * 22 20 18 24 24 H 1.48495 * 109.47334 * 204.82535 * 22 20 18 25 25 H 1.48498 * 109.47279 * 324.82431 * 22 20 18 26 26 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47156 * 299.99530 * 1 2 3 28 28 H 1.09000 * 109.47419 * 59.99244 * 1 2 3 29 29 H 1.09000 * 109.47143 * 120.00281 * 2 1 3 30 30 H 1.08999 * 109.46602 * 240.00340 * 2 1 3 31 31 H 1.09000 * 109.47568 * 300.00665 * 3 2 1 32 32 H 1.09008 * 109.47155 * 60.00464 * 3 2 1 33 33 H 1.09000 * 109.47419 * 300.00756 * 4 3 2 34 34 H 1.08999 * 109.46602 * 60.00340 * 4 3 2 35 35 H 1.09008 * 110.02654 * 336.99512 * 7 5 4 36 36 H 1.08994 * 110.03541 * 98.37612 * 7 5 4 37 37 H 1.09007 * 110.03045 * 119.28385 * 8 7 5 38 38 H 1.08993 * 110.03151 * 240.70936 * 8 7 5 39 39 H 1.08999 * 110.48537 * 142.28470 * 9 8 7 40 40 H 1.08996 * 110.48268 * 264.93240 * 9 8 7 41 41 H 0.97002 * 120.00005 * 335.00129 * 12 10 5 42 42 H 1.09006 * 109.47001 * 175.06939 * 17 15 13 43 43 H 1.09001 * 109.46707 * 295.06499 * 17 15 13 44 44 H 1.09002 * 109.47384 * 55.06966 * 17 15 13 45 45 H 0.96998 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6700 3.4339 0.8464 7 6 3.7151 3.5861 -1.3260 8 6 4.9088 4.4862 -1.6903 9 6 5.9572 4.3010 -0.5739 10 6 5.6283 2.9125 0.0291 11 1 6.0411 2.1150 -0.5888 12 7 6.1225 2.8140 1.4048 13 6 7.3549 2.3240 1.6446 14 8 8.0550 1.9650 0.7216 15 6 7.8630 2.2222 3.0597 16 1 7.2046 1.5724 3.6363 17 6 7.8888 3.6144 3.6938 18 6 9.2563 1.6478 3.0531 19 1 9.9363 1.8898 2.2498 20 6 9.6627 0.8132 4.0726 21 7 10.9068 0.3894 4.1190 22 14 8.4463 0.2846 5.3880 23 1 7.6841 -0.8973 4.9111 24 1 9.1815 -0.0683 6.6290 25 1 7.5063 1.3991 5.6695 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.9338 0.9284 0.8890 34 1 3.9329 0.9288 -0.8909 35 1 3.5538 2.8448 -2.1087 36 1 2.8176 4.1903 -1.1938 37 1 5.3268 4.1817 -2.6499 38 1 4.5911 5.5279 -1.7347 39 1 6.9640 4.3064 -0.9915 40 1 5.8521 5.0801 0.1811 41 1 5.5627 3.1013 2.1430 42 1 8.1723 3.5306 4.7430 43 1 8.6131 4.2386 3.1704 44 1 6.8994 4.0657 3.6198 45 1 11.1929 -0.1974 4.8364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597133266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:50 Heat of formation + Delta-G solvation = -105.922896 kcal Electronic energy + Delta-G solvation = -21012.074739 eV Core-core repulsion = 18026.610993 eV Total energy + Delta-G solvation = -2985.463747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95640 -39.21404 -36.28457 -35.61775 -34.58471 -33.12426 -32.21588 -28.60230 -27.96798 -27.21222 -24.61041 -23.68849 -22.11201 -21.38449 -21.27604 -20.23345 -19.13838 -17.74897 -17.39314 -16.43965 -16.17286 -15.96065 -15.79186 -15.17794 -14.81899 -14.54906 -14.48694 -14.19583 -14.09462 -13.90350 -13.26651 -13.17543 -13.06590 -12.95142 -12.77820 -12.58750 -12.36561 -12.14506 -12.06794 -11.93740 -11.76048 -11.68350 -11.54110 -11.33986 -11.24668 -11.21763 -11.18256 -10.75833 -10.38367 -9.83801 -8.27478 -6.33868 1.34797 1.38424 1.48543 1.93294 2.35220 2.43371 3.09849 3.53178 3.69867 3.86646 4.11823 4.14862 4.22729 4.29998 4.41359 4.41812 4.54249 4.55339 4.58106 4.65799 4.72988 4.75027 4.78872 4.84708 4.93010 4.95192 5.04133 5.05457 5.12954 5.16843 5.20320 5.25591 5.28426 5.31701 5.37881 5.48478 5.51651 5.53267 5.57338 5.59204 5.77651 6.26668 6.68606 6.89950 7.27729 7.58771 8.90866 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.004976 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.668923 B = 5625.622602 C = 6758.971856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.113 4.113 5 C -0.085 4.085 6 H 0.097 0.903 7 C -0.109 4.109 8 C -0.117 4.117 9 C -0.136 4.136 10 C 0.135 3.865 11 H 0.058 0.942 12 N -0.715 5.715 13 C 0.518 3.482 14 O -0.588 6.588 15 C -0.010 4.010 16 H 0.071 0.929 17 C -0.126 4.126 18 C -0.507 4.507 19 H 0.019 0.981 20 C 0.005 3.995 21 N -0.953 5.953 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.222 1.222 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.411 0.589 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.295 7.072 -6.346 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.147 4.147 4 C -0.151 4.151 5 C -0.104 4.104 6 H 0.115 0.885 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.175 4.175 10 C 0.030 3.970 11 H 0.077 0.923 12 N -0.368 5.368 13 C 0.307 3.693 14 O -0.467 6.467 15 C -0.031 4.031 16 H 0.089 0.911 17 C -0.184 4.184 18 C -0.546 4.546 19 H 0.038 0.962 20 C -0.192 4.192 21 N -0.593 5.593 22 Si 0.770 3.230 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.144 1.144 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.248 0.752 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.674 6.718 -6.917 26.491 hybrid contribution 0.673 -0.665 0.643 1.143 sum -24.001 6.053 -6.275 25.535 Atomic orbital electron populations 1.21756 0.95032 1.01755 1.02165 1.21569 0.96552 0.97228 1.01461 1.21560 0.93641 0.96620 1.02837 1.21629 0.96610 0.95527 1.01290 1.22209 0.91358 0.96750 1.00084 0.88527 1.22134 0.98292 0.98475 0.95762 1.22053 0.95046 1.01038 0.97345 1.22722 0.98710 0.96984 0.99075 1.22061 0.94984 0.97172 0.82749 0.92331 1.45974 1.16122 1.65523 1.09178 1.21491 0.80897 0.74608 0.92341 1.90561 1.58185 1.50091 1.47818 1.19335 0.95798 0.97675 0.90318 0.91137 1.21818 1.01105 0.95005 1.00440 1.20905 0.97147 1.28754 1.07768 0.96215 1.26101 0.97277 0.95329 1.00458 1.70080 1.18769 1.35788 1.34682 0.85746 0.79407 0.80283 0.77606 1.19558 1.21022 1.14449 0.92823 0.92430 0.92179 0.92989 0.92619 0.90788 0.91316 0.93359 0.92931 0.91293 0.89265 0.92157 0.89939 0.94386 0.90474 0.75189 0.92485 0.94597 0.90497 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.13 -2.03 5.93 30.59 0.18 -1.85 16 3 C -0.11 -1.59 5.06 30.59 0.15 -1.44 16 4 C -0.11 -2.20 4.60 30.59 0.14 -2.06 16 5 C -0.09 -1.59 2.52 -9.72 -0.02 -1.61 16 6 H 0.10 1.49 8.02 -2.39 -0.02 1.47 16 7 C -0.11 -1.65 5.50 31.32 0.17 -1.48 16 8 C -0.12 -2.11 6.80 31.32 0.21 -1.90 16 9 C -0.14 -3.45 6.51 31.68 0.21 -3.25 16 10 C 0.14 3.79 2.69 46.29 0.12 3.92 16 11 H 0.06 2.07 7.47 -2.38 -0.02 2.05 16 12 N -0.72 -22.61 5.04 -436.39 -2.20 -24.81 16 13 C 0.52 23.29 7.15 87.66 0.63 23.92 16 14 O -0.59 -32.88 15.42 -3.05 -0.05 -32.92 16 15 C -0.01 -0.44 2.30 -12.29 -0.03 -0.47 16 16 H 0.07 3.01 5.29 -2.38 -0.01 3.00 16 17 C -0.13 -4.77 9.12 71.98 0.66 -4.11 16 18 C -0.51 -30.80 8.36 25.60 0.21 -30.58 16 19 H 0.02 1.40 7.61 -2.91 -0.02 1.38 16 20 C 0.00 0.27 5.47 84.66 0.46 0.74 16 21 N -0.95 -61.99 13.96 21.45 0.30 -61.69 16 22 Si 0.95 42.99 26.99 68.60 1.85 44.84 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.22 -8.51 6.82 99.48 0.68 -7.83 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.92 7.48 -2.39 -0.02 0.90 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.13 8.05 -2.39 -0.02 1.11 16 35 H 0.07 1.04 7.77 -2.38 -0.02 1.02 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.41 9.92 7.93 -92.71 -0.74 9.18 16 42 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 2.13 7.43 -2.39 -0.02 2.11 16 45 H 0.27 16.06 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -78.03 353.71 3.89 -74.15 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.17 Total: 21.79 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.81 Total: -21.35 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.90 Total: -86.50 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.05 Total: -32.92 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.85 Total: 44.84 kcal Total: -78.03 3.89 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597133266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.777 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds