Wall clock time and date at job start Mon Mar 30 2020 07:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.53000 * 109.47029 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47536 * 180.02562 * 4 3 2 6 6 H 1.09006 * 110.53395 * 52.38391 * 5 4 3 7 7 C 1.54891 * 110.48729 * 289.78132 * 5 4 3 8 8 C 1.54888 * 102.74905 * 203.37662 * 7 5 4 9 9 C 1.54262 * 104.19330 * 37.93700 * 8 7 5 10 10 C 1.53875 * 106.60405 * 336.39241 * 9 8 7 11 11 H 1.08999 * 110.06783 * 240.69529 * 10 9 8 12 12 N 1.46497 * 110.03002 * 119.28485 * 10 9 8 13 13 C 1.34774 * 120.00283 * 87.84024 * 12 10 9 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 10 16 16 H 1.09002 * 109.46875 * 299.99342 * 15 13 12 17 17 C 1.53000 * 109.47177 * 59.99204 * 15 13 12 18 18 C 1.50694 * 109.47166 * 179.97438 * 15 13 12 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 15 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46584 * 299.99519 * 1 2 3 28 28 H 1.08999 * 109.47458 * 59.99717 * 1 2 3 29 29 H 1.09007 * 109.46737 * 240.00141 * 2 1 3 30 30 H 1.08999 * 109.47458 * 120.00283 * 2 1 3 31 31 H 1.08999 * 109.47045 * 60.00763 * 3 2 1 32 32 H 1.08993 * 109.47637 * 300.00307 * 3 2 1 33 33 H 1.09003 * 109.47218 * 60.00115 * 4 3 2 34 34 H 1.08999 * 109.47458 * 300.00283 * 4 3 2 35 35 H 1.08999 * 110.75200 * 321.69204 * 7 5 4 36 36 H 1.09004 * 110.75744 * 84.87303 * 7 5 4 37 37 H 1.08999 * 110.48587 * 156.61765 * 8 7 5 38 38 H 1.09000 * 110.48458 * 279.13104 * 8 7 5 39 39 H 1.09003 * 110.02800 * 217.10358 * 9 8 7 40 40 H 1.09000 * 110.03283 * 95.67974 * 9 8 7 41 41 H 0.96997 * 119.99674 * 267.82667 * 12 10 9 42 42 H 1.08995 * 109.47131 * 180.02562 * 17 15 13 43 43 H 1.08998 * 109.47544 * 300.00611 * 17 15 13 44 44 H 1.09007 * 109.46721 * 60.00519 * 17 15 13 45 45 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6205 3.4527 0.8091 7 6 3.7973 3.5606 -1.3648 8 6 4.8547 4.6914 -1.4120 9 6 6.1098 4.0626 -0.7725 10 6 5.6173 2.9140 0.1253 11 1 5.9042 3.0991 1.1605 12 7 6.1823 1.6421 -0.3320 13 6 7.3814 1.2332 0.1276 14 8 7.9931 1.9186 0.9195 15 6 7.9624 -0.0754 -0.3423 16 1 7.2873 -0.8889 -0.0765 17 6 8.1419 -0.0375 -1.8613 18 6 9.2998 -0.2966 0.3159 19 1 9.6904 0.4373 1.0053 20 6 10.0249 -1.4360 0.0380 21 7 9.5496 -2.3294 -0.8019 22 14 11.6863 -1.7064 0.8481 23 1 11.9950 -0.5595 1.7395 24 1 11.6497 -2.9578 1.6468 25 1 12.7346 -1.8172 -0.1978 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9338 0.9285 0.8891 35 1 3.9480 2.8563 -2.1830 36 1 2.7876 3.9706 -1.3911 37 1 5.0567 4.9820 -2.4430 38 1 4.5193 5.5517 -0.8328 39 1 6.6357 4.8058 -0.1732 40 1 6.7692 3.6735 -1.5484 41 1 5.6931 1.0940 -0.9654 42 1 8.5617 -0.9843 -2.2012 43 1 7.1748 0.1226 -2.3377 44 1 8.8171 0.7760 -2.1271 45 1 10.0596 -3.1311 -0.9970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597133268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:59 Heat of formation + Delta-G solvation = -80.592272 kcal Electronic energy + Delta-G solvation = -21222.016864 eV Core-core repulsion = 18237.651536 eV Total energy + Delta-G solvation = -2984.365328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67898 -37.67044 -35.40056 -33.66988 -32.84543 -31.35106 -30.37434 -27.40051 -27.07885 -25.08778 -23.30043 -22.54221 -21.32419 -20.35437 -19.64741 -18.91085 -16.29375 -16.22980 -15.58033 -15.50513 -14.86056 -14.49370 -14.35310 -13.95566 -13.72783 -13.62426 -12.95589 -12.85457 -12.58258 -12.35995 -11.97631 -11.64275 -11.52179 -11.38482 -11.16006 -11.04701 -10.98107 -10.76357 -10.72504 -10.65599 -10.59548 -10.51595 -10.31789 -10.21613 -10.19979 -9.90677 -8.91513 -8.53124 -8.32436 -8.25235 -5.99420 -4.01914 3.34560 3.41956 3.50668 3.82123 4.03438 4.48852 4.52886 4.67326 4.71458 4.91116 5.02395 5.04968 5.27441 5.34029 5.42466 5.46768 5.54773 5.59004 5.68418 5.69920 5.75403 5.79581 5.84711 5.90042 5.98492 6.01670 6.08228 6.13573 6.16860 6.22696 6.34606 6.36565 6.46521 6.56517 6.66548 6.87584 6.98275 7.27487 7.53114 7.80165 8.04620 8.22181 8.54699 9.07863 9.35525 9.63772 11.08281 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.004760 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.869249 B = 5881.135343 C = 6844.775563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.098 4.098 6 H 0.080 0.920 7 C -0.118 4.118 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.144 3.856 11 H 0.083 0.917 12 N -0.738 5.738 13 C 0.518 3.482 14 O -0.548 6.548 15 C 0.028 3.972 16 H 0.051 0.949 17 C -0.131 4.131 18 C -0.498 4.498 19 H 0.074 0.926 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.394 0.606 42 H 0.092 0.908 43 H 0.011 0.989 44 H 0.030 0.970 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 8.291 -2.415 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.150 4.150 5 C -0.117 4.117 6 H 0.099 0.901 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.174 4.174 10 C 0.039 3.961 11 H 0.101 0.899 12 N -0.393 5.393 13 C 0.308 3.692 14 O -0.424 6.424 15 C 0.007 3.993 16 H 0.068 0.932 17 C -0.189 4.189 18 C -0.536 4.536 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.111 0.889 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.240 8.614 -1.899 18.481 hybrid contribution 0.660 -0.449 0.035 0.799 sum -15.580 8.165 -1.864 17.688 Atomic orbital electron populations 1.21772 0.96232 1.01400 1.01495 1.21558 0.95478 0.97179 1.02333 1.21619 0.95546 0.96539 1.01733 1.21587 0.94851 0.95890 1.02655 1.22282 0.94768 0.96560 0.98058 0.90137 1.22581 0.98414 0.97552 0.97040 1.22339 0.95549 0.97748 1.00467 1.22613 0.97492 0.97802 0.99474 1.21405 0.91493 0.84464 0.98786 0.89909 1.46487 1.21838 1.22226 1.48783 1.21936 0.79072 0.88898 0.79298 1.90518 1.59949 1.57279 1.34679 1.18863 0.97474 0.88619 0.94349 0.93176 1.21727 0.97382 1.03593 0.96189 1.21202 1.01830 1.05211 1.25368 0.90778 1.24954 0.98253 0.95817 0.95291 1.69886 1.38433 1.10264 1.35132 0.86423 0.83668 0.78050 0.79269 1.19581 1.21091 1.21094 0.92946 0.92972 0.92956 0.91904 0.91943 0.92303 0.92102 0.91711 0.91360 0.91401 0.91783 0.91946 0.91919 0.91701 0.91130 0.77001 0.88937 0.97048 0.95098 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.12 -1.09 5.09 -26.73 -0.14 -1.22 16 4 C -0.11 -1.25 3.75 -26.73 -0.10 -1.35 16 5 C -0.10 -1.10 2.81 -88.96 -0.25 -1.35 16 6 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.12 -1.19 5.67 -24.74 -0.14 -1.33 16 8 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 9 C -0.13 -1.89 6.59 -25.61 -0.17 -2.06 16 10 C 0.14 2.16 3.12 -66.82 -0.21 1.95 16 11 H 0.08 1.42 7.57 -51.93 -0.39 1.03 16 12 N -0.74 -12.86 4.23 -52.73 -0.22 -13.09 16 13 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 14 O -0.55 -14.48 15.11 5.56 0.08 -14.40 16 15 C 0.03 0.71 2.64 -92.93 -0.25 0.46 16 16 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -3.04 8.86 37.16 0.33 -2.71 16 18 C -0.50 -14.32 8.37 -34.44 -0.29 -14.60 16 19 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 21 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 22 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.53 7.55 -51.93 -0.39 0.14 16 33 H 0.06 0.73 6.41 -51.93 -0.33 0.40 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 36 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 41 H 0.39 6.13 5.98 -40.82 -0.24 5.88 16 42 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 43 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 44 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -30.58 349.55 -8.91 -39.48 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.30 Total: 3.06 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.34 Total: -12.58 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.40 Total: -37.89 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.58 -8.91 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597133268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.111 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds