Wall clock time and date at job start Mon Mar 30 2020 07:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46659 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.81840 * 51.66974 * 5 4 3 7 7 C 1.54889 * 110.76051 * 288.33004 * 5 4 3 8 8 C 1.54264 * 104.19577 * 203.74938 * 7 5 4 9 9 C 1.53868 * 106.60230 * 23.60740 * 8 7 5 10 10 C 1.54270 * 106.59843 * 359.97438 * 9 8 7 11 11 H 1.08998 * 110.47983 * 95.20141 * 10 9 8 12 12 N 1.46499 * 110.48531 * 217.71027 * 10 9 8 13 13 C 1.34769 * 120.00202 * 273.54720 * 12 10 9 14 14 O 1.21274 * 120.00301 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00239 * 180.02562 * 13 12 10 16 16 H 1.09003 * 109.47192 * 300.00432 * 15 13 12 17 17 C 1.53001 * 109.47115 * 59.99892 * 15 13 12 18 18 C 1.50698 * 109.47413 * 180.02562 * 15 13 12 19 19 H 1.07995 * 120.00147 * 354.35170 * 18 15 13 20 20 C 1.37875 * 119.99761 * 174.35890 * 18 15 13 21 21 N 1.31518 * 119.99628 * 156.76871 * 20 18 15 22 22 Si 1.86800 * 120.00336 * 336.76692 * 20 18 15 23 23 H 1.48503 * 109.47168 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46893 * 300.00175 * 22 20 18 25 25 H 1.48503 * 109.46847 * 60.00339 * 22 20 18 26 26 H 1.08999 * 109.47301 * 300.00011 * 1 2 3 27 27 H 1.09002 * 109.46334 * 60.00108 * 1 2 3 28 28 H 1.08993 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47301 * 239.99989 * 2 1 3 30 30 H 1.09007 * 109.46791 * 120.00021 * 2 1 3 31 31 H 1.08999 * 109.46904 * 59.99745 * 3 2 1 32 32 H 1.08995 * 109.46829 * 300.00026 * 3 2 1 33 33 H 1.08999 * 109.47161 * 60.00298 * 4 3 2 34 34 H 1.08999 * 109.47052 * 299.99511 * 4 3 2 35 35 H 1.08994 * 110.48601 * 85.06514 * 7 5 4 36 36 H 1.09004 * 110.59232 * 322.47586 * 7 5 4 37 37 H 1.09002 * 110.02982 * 264.31776 * 8 7 5 38 38 H 1.09006 * 110.03334 * 142.89435 * 8 7 5 39 39 H 1.09006 * 110.02914 * 240.71710 * 9 8 7 40 40 H 1.08998 * 110.03369 * 119.29020 * 9 8 7 41 41 H 0.97002 * 119.99842 * 93.55529 * 12 10 9 42 42 H 1.08994 * 109.47265 * 173.08257 * 17 15 13 43 43 H 1.09002 * 109.47128 * 293.09008 * 17 15 13 44 44 H 1.09001 * 109.47164 * 53.08284 * 17 15 13 45 45 H 0.96993 * 120.00469 * 354.93030 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6131 3.4605 0.8005 7 6 3.8342 3.5547 -1.3734 8 6 4.8836 4.6836 -1.4373 9 6 6.0212 4.2810 -0.4826 10 6 5.6231 2.9216 0.1287 11 1 6.0733 2.1039 -0.4341 12 7 6.0237 2.8554 1.5363 13 6 7.2658 2.4486 1.8649 14 8 8.0520 2.1377 0.9955 15 6 7.6778 2.3799 3.3129 16 1 7.5980 3.3704 3.7608 17 6 6.7611 1.4079 4.0584 18 6 9.1031 1.8997 3.4075 19 1 9.6256 1.5807 2.5178 20 6 9.7400 1.8675 4.6299 21 7 10.7618 1.0612 4.8179 22 14 9.1515 2.9691 6.0191 23 1 9.9967 2.7460 7.2196 24 1 9.2512 4.3902 5.5999 25 1 7.7385 2.6461 6.3422 26 1 -0.3634 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 2.8266 3.9673 -1.4220 36 1 3.9925 2.8406 -2.1817 37 1 4.4396 5.6249 -1.1132 38 1 5.2659 4.7811 -2.4535 39 1 6.1292 5.0268 0.3050 40 1 6.9555 4.1830 -1.0353 41 1 5.3950 3.1043 2.2317 42 1 7.1325 1.2638 5.0730 43 1 5.7514 1.8168 4.0957 44 1 6.7462 0.4505 3.5376 45 1 11.0214 0.4369 4.1224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597133269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:04 Heat of formation + Delta-G solvation = -86.514929 kcal Electronic energy + Delta-G solvation = -21021.899778 eV Core-core repulsion = 18037.277624 eV Total energy + Delta-G solvation = -2984.622154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.59680 -37.87570 -35.52358 -33.71643 -33.10356 -31.44873 -30.99921 -27.48211 -27.16710 -24.80052 -23.41257 -22.29376 -21.33298 -20.37604 -19.94171 -18.95413 -17.33232 -16.35347 -15.91123 -15.61394 -15.09088 -14.34931 -14.12164 -13.83648 -13.75457 -13.56420 -13.14676 -13.06987 -12.69763 -12.44000 -12.23568 -11.98276 -11.72060 -11.58854 -11.40528 -11.27379 -11.19214 -11.00957 -10.86245 -10.68599 -10.53781 -10.49565 -10.43121 -10.29589 -10.16834 -9.82951 -8.90956 -8.65812 -8.44426 -8.10792 -6.42978 -3.97922 3.37931 3.44303 3.59529 3.67333 3.86946 4.39201 4.53523 4.59194 4.70135 4.84950 4.87888 4.95883 5.18880 5.25800 5.34354 5.40422 5.45175 5.48151 5.54985 5.60868 5.62352 5.71956 5.75030 5.85606 5.86800 5.90794 5.96174 6.01723 6.04917 6.13969 6.23332 6.24697 6.27507 6.37614 6.42014 6.48927 6.57258 6.94756 7.12693 7.27529 7.89140 8.36512 8.51436 9.09470 9.21198 9.67896 10.96416 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.004567 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.915031 B = 6129.257431 C = 6956.063392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.113 4.113 5 C -0.097 4.097 6 H 0.079 0.921 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.138 4.138 10 C 0.147 3.853 11 H 0.087 0.913 12 N -0.741 5.741 13 C 0.526 3.474 14 O -0.537 6.537 15 C 0.003 3.997 16 H 0.042 0.958 17 C -0.138 4.138 18 C -0.594 4.594 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.899 5.899 22 Si 1.035 2.965 23 H -0.284 1.284 24 H -0.284 1.284 25 H -0.277 1.277 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.393 0.607 42 H 0.059 0.941 43 H 0.025 0.975 44 H 0.046 0.954 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.843 4.000 -9.414 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.150 4.150 5 C -0.116 4.116 6 H 0.097 0.903 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.177 4.177 10 C 0.041 3.959 11 H 0.105 0.895 12 N -0.394 5.394 13 C 0.315 3.685 14 O -0.412 6.412 15 C -0.019 4.019 16 H 0.059 0.941 17 C -0.196 4.196 18 C -0.632 4.632 19 H 0.093 0.907 20 C -0.170 4.170 21 N -0.532 5.532 22 Si 0.862 3.138 23 H -0.210 1.210 24 H -0.210 1.210 25 H -0.204 1.204 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.227 0.773 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.873 4.207 -8.491 22.017 hybrid contribution -0.614 -0.275 -1.258 1.426 sum -20.487 3.933 -9.749 23.027 Atomic orbital electron populations 1.21775 0.96128 1.01417 1.01621 1.21552 0.95586 0.97216 1.02115 1.21613 0.95482 0.96509 1.01848 1.21609 0.95042 0.95792 1.02588 1.22381 0.94827 0.96385 0.97992 0.90261 1.22356 0.98701 0.97558 0.96721 1.22092 0.96050 0.98302 0.99564 1.22566 0.98523 0.97599 0.98962 1.21701 0.93108 0.97472 0.83612 0.89537 1.46323 1.15463 1.70713 1.06877 1.21441 0.79866 0.74095 0.93072 1.90547 1.51438 1.47629 1.51570 1.19169 0.98430 0.96552 0.87702 0.94061 1.22092 0.96382 0.99812 1.01339 1.21896 0.96049 1.48450 0.96807 0.90705 1.25696 0.95076 0.97072 0.99181 1.70816 1.28537 1.18396 1.35452 0.84183 0.76205 0.76752 0.76613 1.20995 1.21024 1.20356 0.92826 0.92934 0.92957 0.92150 0.91968 0.92148 0.92096 0.91869 0.91519 0.91649 0.91443 0.92017 0.91982 0.91469 0.91455 0.77305 0.92175 0.95562 0.93524 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.01 5.11 -26.73 -0.14 -1.14 16 4 C -0.11 -1.17 4.71 -26.73 -0.13 -1.30 16 5 C -0.10 -1.04 2.46 -88.64 -0.22 -1.25 16 6 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 7 C -0.12 -1.08 5.69 -25.07 -0.14 -1.23 16 8 C -0.12 -1.26 6.80 -25.62 -0.17 -1.43 16 9 C -0.14 -1.88 6.53 -25.61 -0.17 -2.05 16 10 C 0.15 2.13 2.60 -66.28 -0.17 1.95 16 11 H 0.09 1.46 7.57 -51.93 -0.39 1.07 16 12 N -0.74 -12.35 5.02 -52.21 -0.26 -12.61 16 13 C 0.53 11.83 7.14 -10.99 -0.08 11.76 16 14 O -0.54 -14.29 15.18 5.56 0.08 -14.20 16 15 C 0.00 0.08 2.23 -92.92 -0.21 -0.13 16 16 H 0.04 0.95 6.71 -51.93 -0.35 0.60 16 17 C -0.14 -2.91 8.77 37.16 0.33 -2.58 16 18 C -0.59 -17.41 8.57 -34.44 -0.30 -17.70 16 19 H 0.07 2.49 7.02 -52.49 -0.37 2.12 16 20 C 0.04 1.03 5.19 -17.82 -0.09 0.94 16 21 N -0.90 -28.02 13.70 55.43 0.76 -27.27 16 22 Si 1.03 24.72 26.45 -169.99 -4.50 20.22 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -5.97 6.16 56.52 0.35 -5.62 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 33 H 0.06 0.67 7.99 -51.93 -0.41 0.26 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.07 0.63 7.94 -51.93 -0.41 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.39 5.53 8.09 -40.82 -0.33 5.19 16 42 H 0.06 1.32 5.49 -51.93 -0.28 1.04 16 43 H 0.03 0.43 7.77 -51.93 -0.40 0.03 16 44 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 45 H 0.27 8.50 8.73 -40.82 -0.36 8.15 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -32.72 351.04 -8.36 -41.08 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.46 Total: 3.65 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.28 Total: -16.16 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.50 Total: -39.88 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.50 Total: 20.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.72 -8.36 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597133269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.437 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds