Wall clock time and date at job start Mon Mar 30 2020 07:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47033 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46659 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.81840 * 51.66974 * 5 4 3 7 7 C 1.54889 * 110.76051 * 288.33004 * 5 4 3 8 8 C 1.54264 * 104.19577 * 203.74938 * 7 5 4 9 9 C 1.53868 * 106.60230 * 23.60740 * 8 7 5 10 10 C 1.54270 * 106.59843 * 359.97438 * 9 8 7 11 11 H 1.08998 * 110.47983 * 95.20141 * 10 9 8 12 12 N 1.46499 * 110.48531 * 217.71027 * 10 9 8 13 13 C 1.34769 * 120.00202 * 273.54720 * 12 10 9 14 14 O 1.21274 * 120.00301 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00239 * 180.02562 * 13 12 10 16 16 H 1.09003 * 109.47192 * 300.00432 * 15 13 12 17 17 C 1.53001 * 109.47115 * 59.99892 * 15 13 12 18 18 C 1.50698 * 109.47413 * 180.02562 * 15 13 12 19 19 H 1.07995 * 120.00147 * 354.35170 * 18 15 13 20 20 C 1.37875 * 119.99761 * 174.35890 * 18 15 13 21 21 N 1.31518 * 119.99628 * 156.76871 * 20 18 15 22 22 Si 1.86800 * 120.00336 * 336.76692 * 20 18 15 23 23 H 1.48503 * 109.47168 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46893 * 300.00175 * 22 20 18 25 25 H 1.48503 * 109.46847 * 60.00339 * 22 20 18 26 26 H 1.08999 * 109.47301 * 300.00011 * 1 2 3 27 27 H 1.09002 * 109.46334 * 60.00108 * 1 2 3 28 28 H 1.08993 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47301 * 239.99989 * 2 1 3 30 30 H 1.09007 * 109.46791 * 120.00021 * 2 1 3 31 31 H 1.08999 * 109.46904 * 59.99745 * 3 2 1 32 32 H 1.08995 * 109.46829 * 300.00026 * 3 2 1 33 33 H 1.08999 * 109.47161 * 60.00298 * 4 3 2 34 34 H 1.08999 * 109.47052 * 299.99511 * 4 3 2 35 35 H 1.08994 * 110.48601 * 85.06514 * 7 5 4 36 36 H 1.09004 * 110.59232 * 322.47586 * 7 5 4 37 37 H 1.09002 * 110.02982 * 264.31776 * 8 7 5 38 38 H 1.09006 * 110.03334 * 142.89435 * 8 7 5 39 39 H 1.09006 * 110.02914 * 240.71710 * 9 8 7 40 40 H 1.08998 * 110.03369 * 119.29020 * 9 8 7 41 41 H 0.97002 * 119.99842 * 93.55529 * 12 10 9 42 42 H 1.08994 * 109.47265 * 173.08257 * 17 15 13 43 43 H 1.09002 * 109.47128 * 293.09008 * 17 15 13 44 44 H 1.09001 * 109.47164 * 53.08284 * 17 15 13 45 45 H 0.96993 * 120.00469 * 354.93030 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6131 3.4605 0.8005 7 6 3.8342 3.5547 -1.3734 8 6 4.8836 4.6836 -1.4373 9 6 6.0212 4.2810 -0.4826 10 6 5.6231 2.9216 0.1287 11 1 6.0733 2.1039 -0.4341 12 7 6.0237 2.8554 1.5363 13 6 7.2658 2.4486 1.8649 14 8 8.0520 2.1377 0.9955 15 6 7.6778 2.3799 3.3129 16 1 7.5980 3.3704 3.7608 17 6 6.7611 1.4079 4.0584 18 6 9.1031 1.8997 3.4075 19 1 9.6256 1.5807 2.5178 20 6 9.7400 1.8675 4.6299 21 7 10.7618 1.0612 4.8179 22 14 9.1515 2.9691 6.0191 23 1 9.9967 2.7460 7.2196 24 1 9.2512 4.3902 5.5999 25 1 7.7385 2.6461 6.3422 26 1 -0.3634 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8909 35 1 2.8266 3.9673 -1.4220 36 1 3.9925 2.8406 -2.1817 37 1 4.4396 5.6249 -1.1132 38 1 5.2659 4.7811 -2.4535 39 1 6.1292 5.0268 0.3050 40 1 6.9555 4.1830 -1.0353 41 1 5.3950 3.1043 2.2317 42 1 7.1325 1.2638 5.0730 43 1 5.7514 1.8168 4.0957 44 1 6.7462 0.4505 3.5376 45 1 11.0214 0.4369 4.1224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597133269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:03 Heat of formation + Delta-G solvation = -107.610507 kcal Electronic energy + Delta-G solvation = -21022.814551 eV Core-core repulsion = 18037.277624 eV Total energy + Delta-G solvation = -2985.536927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02428 -39.23024 -36.30991 -35.78333 -34.63645 -32.98733 -32.23595 -28.59323 -28.02153 -26.81400 -24.61343 -23.71486 -22.04538 -21.56125 -21.12098 -20.40177 -19.47358 -17.75966 -17.50772 -16.35871 -16.22643 -15.93309 -15.53218 -15.19358 -14.83377 -14.74701 -14.52866 -14.23309 -13.95709 -13.84884 -13.34222 -13.30691 -13.14139 -12.91515 -12.80053 -12.37610 -12.36970 -12.06327 -12.01325 -11.95482 -11.69632 -11.66087 -11.51741 -11.34253 -11.26876 -11.20103 -11.06118 -10.54712 -10.33950 -9.91992 -8.78642 -6.34319 1.48429 1.58012 1.75782 1.88110 2.41423 2.54386 3.03014 3.48428 3.65913 3.85239 4.07578 4.14038 4.19556 4.28939 4.39127 4.46566 4.50858 4.53459 4.57996 4.63231 4.68060 4.70968 4.75446 4.84466 4.93020 4.94900 5.03261 5.04291 5.12627 5.15694 5.20282 5.24084 5.26342 5.27961 5.36763 5.48144 5.51029 5.52195 5.57281 5.72287 5.89341 6.06257 6.61999 6.79311 7.41059 7.53651 8.59333 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.004567 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.915031 B = 6129.257431 C = 6956.063392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.111 4.111 5 C -0.084 4.084 6 H 0.099 0.901 7 C -0.109 4.109 8 C -0.114 4.114 9 C -0.139 4.139 10 C 0.138 3.862 11 H 0.054 0.946 12 N -0.714 5.714 13 C 0.523 3.477 14 O -0.593 6.593 15 C -0.003 4.003 16 H 0.066 0.934 17 C -0.131 4.131 18 C -0.609 4.609 19 H 0.012 0.988 20 C -0.017 4.017 21 N -0.931 5.931 22 Si 1.083 2.917 23 H -0.290 1.290 24 H -0.264 1.264 25 H -0.228 1.228 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.412 0.588 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.030 0.970 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.257 6.253 -8.529 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.146 4.146 4 C -0.149 4.149 5 C -0.102 4.102 6 H 0.117 0.883 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.178 4.178 10 C 0.033 3.967 11 H 0.072 0.928 12 N -0.367 5.367 13 C 0.312 3.688 14 O -0.473 6.473 15 C -0.025 4.025 16 H 0.083 0.917 17 C -0.189 4.189 18 C -0.647 4.647 19 H 0.031 0.969 20 C -0.215 4.215 21 N -0.566 5.566 22 Si 0.902 3.098 23 H -0.216 1.216 24 H -0.190 1.190 25 H -0.152 1.152 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.249 0.751 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -24.367 6.470 -7.631 26.341 hybrid contribution 0.821 -1.027 -1.658 2.116 sum -23.545 5.443 -9.289 25.890 Atomic orbital electron populations 1.21756 0.95065 1.01757 1.02160 1.21565 0.96524 0.97192 1.01477 1.21553 0.93567 0.96667 1.02847 1.21584 0.96659 0.95304 1.01351 1.22349 0.91126 0.97031 0.99729 0.88263 1.22362 0.99797 0.97012 0.95524 1.22062 0.94862 0.99476 0.98825 1.22542 0.98893 0.96882 0.99442 1.21909 0.96134 0.97007 0.81618 0.92811 1.46004 1.13585 1.68383 1.08704 1.21270 0.81208 0.74126 0.92179 1.90535 1.53562 1.50488 1.52707 1.19163 0.95714 0.98144 0.89451 0.91656 1.21959 0.98478 0.98467 0.99959 1.21980 0.99214 1.48619 0.94851 0.96925 1.27459 0.94219 0.97325 1.02480 1.70970 1.30665 1.19904 1.35058 0.83630 0.78335 0.75264 0.72608 1.21562 1.18953 1.15153 0.92434 0.92199 0.92823 0.92586 0.92960 0.91303 0.90792 0.92787 0.93317 0.88799 0.91533 0.90039 0.91488 0.91648 0.94362 0.75103 0.92735 0.90134 0.95117 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -1.94 5.93 30.60 0.18 -1.76 16 3 C -0.11 -1.53 5.11 30.59 0.16 -1.37 16 4 C -0.11 -2.10 4.71 30.59 0.14 -1.95 16 5 C -0.08 -1.54 2.46 -9.51 -0.02 -1.57 16 6 H 0.10 1.52 8.02 -2.39 -0.02 1.50 16 7 C -0.11 -1.66 5.69 31.67 0.18 -1.48 16 8 C -0.11 -2.04 6.80 31.32 0.21 -1.83 16 9 C -0.14 -3.69 6.53 31.32 0.20 -3.48 16 10 C 0.14 3.92 2.60 46.06 0.12 4.04 16 11 H 0.05 1.90 7.57 -2.39 -0.02 1.88 16 12 N -0.71 -22.89 5.02 -437.50 -2.20 -25.08 16 13 C 0.52 23.85 7.14 87.66 0.63 24.48 16 14 O -0.59 -33.51 15.18 -3.01 -0.05 -33.56 16 15 C 0.00 -0.13 2.23 -12.29 -0.03 -0.16 16 16 H 0.07 2.79 6.71 -2.39 -0.02 2.78 16 17 C -0.13 -5.17 8.77 71.98 0.63 -4.54 16 18 C -0.61 -37.12 8.57 25.60 0.22 -36.90 16 19 H 0.01 0.90 7.02 -2.91 -0.02 0.87 16 20 C -0.02 -1.01 5.19 84.65 0.44 -0.57 16 21 N -0.93 -60.61 13.70 21.45 0.29 -60.31 16 22 Si 1.08 48.32 26.45 68.60 1.81 50.13 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.23 -8.41 6.16 99.48 0.61 -7.80 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 33 H 0.05 1.11 7.99 -2.39 -0.02 1.09 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 36 H 0.07 1.05 7.94 -2.38 -0.02 1.03 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 1.75 8.04 -2.38 -0.02 1.73 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.41 10.10 8.09 -92.71 -0.75 9.35 16 42 H 0.05 2.22 5.49 -2.39 -0.01 2.21 16 43 H 0.08 2.31 7.77 -2.39 -0.02 2.29 16 44 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 45 H 0.25 16.79 8.73 -92.71 -0.81 15.98 16 Total: -1.00 -78.41 351.04 3.70 -74.71 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.05 Total: 22.32 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.78 Total: -28.21 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.90 Total: -85.39 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.56 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.81 Total: 50.13 kcal Total: -78.41 3.70 -74.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597133269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.898 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds