Wall clock time and date at job start Mon Mar 30 2020 07:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46625 * 2 1 4 4 C 1.52998 * 109.46855 * 119.99368 * 2 1 3 5 5 C 1.50697 * 109.47659 * 300.00180 * 4 2 1 6 6 H 1.08008 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00530 * 180.27682 * 5 4 2 8 8 N 1.31515 * 119.99569 * 359.72539 * 7 5 4 9 9 Si 1.86790 * 120.00489 * 179.72434 * 7 5 4 10 10 H 1.48506 * 109.46970 * 59.99963 * 9 7 5 11 11 H 1.48496 * 109.47531 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47357 * 300.00315 * 9 7 5 13 13 C 1.52997 * 109.47074 * 239.99944 * 2 1 3 14 14 N 1.46892 * 109.47370 * 41.58240 * 13 2 1 15 15 C 1.46266 * 110.99842 * 52.28935 * 14 13 2 16 16 C 1.53980 * 112.11733 * 180.65325 * 15 14 13 17 17 C 1.51334 * 106.63049 * 304.22255 * 16 15 14 18 18 H 1.08999 * 109.93088 * 304.45253 * 17 16 15 19 19 C 1.52107 * 118.46164 * 176.10550 * 17 16 15 20 20 O 1.44648 * 106.02817 * 215.37724 * 19 17 16 21 21 C 1.45077 * 109.64214 * 3.35431 * 20 19 17 22 22 C 1.52829 * 103.58012 * 24.64271 * 21 20 19 23 23 H 1.09001 * 111.38293 * 75.51999 * 22 21 20 24 24 C 1.47808 * 110.99952 * 180.21834 * 14 13 2 25 25 H 1.09000 * 109.47405 * 300.00027 * 1 2 3 26 26 H 1.08998 * 109.47408 * 60.00747 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47316 * 153.08824 * 3 2 1 29 29 H 1.09004 * 109.46770 * 273.07902 * 3 2 1 30 30 H 1.08993 * 109.47984 * 33.08360 * 3 2 1 31 31 H 1.09005 * 109.46921 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47214 * 60.00230 * 4 2 1 33 33 H 0.97005 * 120.00062 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46985 * 161.59065 * 13 2 1 35 35 H 1.09000 * 109.46986 * 281.58067 * 13 2 1 36 36 H 1.08994 * 108.95665 * 301.33957 * 15 14 13 37 37 H 1.08999 * 108.95557 * 59.98290 * 15 14 13 38 38 H 1.09003 * 110.02124 * 184.93839 * 16 15 14 39 39 H 1.09004 * 110.09584 * 63.54279 * 16 15 14 40 40 H 1.09000 * 110.14358 * 334.51331 * 19 17 16 41 41 H 1.08996 * 110.14104 * 96.17221 * 19 17 16 42 42 H 1.09001 * 110.59929 * 266.12666 * 21 20 19 43 43 H 1.09000 * 110.60288 * 143.16657 * 21 20 19 44 44 H 1.08999 * 110.00340 * 294.48471 * 24 14 13 45 45 H 1.08997 * 110.00157 * 55.88552 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9163 0.8672 2.3806 7 6 1.8753 -0.4783 3.7321 8 7 2.6315 -1.5475 3.8528 9 14 1.2590 0.4068 5.2571 10 1 -0.2260 0.4074 5.2629 11 1 1.7579 -0.2903 6.4697 12 1 1.7545 1.8068 5.2513 13 6 2.0400 -0.7213 -1.2492 14 7 1.2266 -0.3288 -2.4077 15 6 1.1534 1.1271 -2.5276 16 6 0.2924 1.5676 -3.7259 17 6 0.8810 0.9011 -4.9504 18 1 1.9375 1.1540 -5.0394 19 6 0.1750 1.0840 -6.2852 20 8 0.3334 -0.1661 -6.9954 21 6 1.0204 -1.1239 -6.1496 22 6 0.7170 -0.6348 -4.7338 23 1 -0.3046 -0.8761 -4.4404 24 6 1.6880 -1.0116 -3.6347 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.0250 1.4797 0.4651 29 1 2.1089 1.8034 -1.0262 30 1 1.3493 2.0721 0.5609 31 1 3.1300 -0.7207 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 2.8694 -1.8764 4.7338 34 1 3.0804 -0.4489 -1.4267 35 1 1.9666 -1.7988 -1.1020 36 1 0.7238 1.5366 -1.6134 37 1 2.1613 1.5233 -2.6515 38 1 0.3321 2.6514 -3.8355 39 1 -0.7390 1.2446 -3.5847 40 1 -0.8827 1.2931 -6.1249 41 1 0.6371 1.8965 -6.8459 42 1 2.0934 -1.1037 -6.3405 43 1 0.6212 -2.1265 -6.3028 44 1 2.6923 -0.6758 -3.8930 45 1 1.6816 -2.0912 -3.4854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597230464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:35 Heat of formation + Delta-G solvation = -33.084026 kcal Electronic energy + Delta-G solvation = -21789.793663 eV Core-core repulsion = 18807.488447 eV Total energy + Delta-G solvation = -2982.305216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63990 -38.45682 -35.64780 -32.92381 -32.21019 -31.21697 -28.66728 -27.13054 -26.41224 -26.05376 -24.48525 -22.60328 -21.54654 -21.43373 -20.15719 -17.96242 -16.38486 -16.14216 -15.90057 -15.48020 -15.11562 -15.06100 -14.35940 -14.15861 -13.67903 -13.43770 -13.23675 -13.01788 -12.75001 -12.40665 -12.34909 -11.98683 -11.63758 -11.29878 -11.21859 -11.01577 -10.96146 -10.82920 -10.76226 -10.54477 -10.40751 -10.23366 -10.12021 -9.83206 -9.73226 -9.67075 -8.92353 -8.81565 -8.31238 -7.96110 -5.95939 -3.96132 3.34449 3.39250 3.41268 3.68631 3.89116 4.16209 4.48983 4.54054 4.76083 4.99293 5.13056 5.18403 5.26981 5.29055 5.39082 5.41200 5.49760 5.59218 5.61597 5.64481 5.73372 5.77550 5.81577 5.89633 5.98954 6.04070 6.07492 6.21799 6.30511 6.32603 6.43212 6.60802 6.65890 6.75791 6.88108 7.17300 7.21484 7.25708 7.42923 7.45796 7.69499 7.86008 8.03786 8.48597 9.09075 9.66738 11.15713 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.003956 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.811788 B = 7075.403317 C = 7368.578955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.060 4.060 3 C -0.154 4.154 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.544 5.544 15 C 0.045 3.955 16 C -0.105 4.105 17 C -0.134 4.134 18 H 0.077 0.923 19 C 0.061 3.939 20 O -0.391 6.391 21 C 0.061 3.939 22 C -0.125 4.125 23 H 0.097 0.903 24 C 0.075 3.925 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.028 0.972 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.033 0.967 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 4.191 -18.013 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.060 4.060 3 C -0.210 4.210 4 C -0.001 4.001 5 C -0.545 4.545 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.055 4.055 14 N -0.268 5.268 15 C -0.082 4.082 16 C -0.143 4.143 17 C -0.152 4.152 18 H 0.095 0.905 19 C -0.015 4.015 20 O -0.311 6.311 21 C -0.016 4.016 22 C -0.144 4.144 23 H 0.115 0.885 24 C -0.053 4.053 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.366 3.895 -17.999 18.721 hybrid contribution 0.751 0.683 1.106 1.501 sum -2.616 4.578 -16.893 17.696 Atomic orbital electron populations 1.21778 0.94857 1.01055 0.99943 1.20651 0.95950 0.94863 0.94544 1.22451 1.01494 0.96841 1.00238 1.19156 0.95793 0.95131 0.90034 1.21182 1.30692 1.11991 0.90620 0.92492 1.25007 0.95398 0.95125 0.99026 1.69955 1.37210 1.23245 1.23388 0.86730 0.79181 0.79781 0.82722 1.20318 1.21442 1.20395 1.22239 0.93384 1.00393 0.89482 1.61117 1.54772 1.07786 1.03174 1.22783 0.97722 0.88274 0.99401 1.21441 1.00324 0.99564 0.92951 1.22447 1.00952 0.96902 0.94934 0.90497 1.22701 1.00305 0.86781 0.91719 1.88916 1.79222 1.22828 1.40140 1.22988 0.96859 0.93062 0.88649 1.22631 1.02191 0.95111 0.94477 0.88451 1.21670 0.94990 0.99399 0.89194 0.92885 0.93504 0.93863 0.93170 0.92820 0.92949 0.96943 0.96674 0.93113 0.95681 0.90972 0.87218 0.95447 0.91279 0.90703 0.91278 0.91205 0.92065 0.89457 0.94914 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 7.49 37.16 0.28 -1.96 16 2 C -0.06 -1.16 0.53 -154.51 -0.08 -1.24 16 3 C -0.15 -2.79 7.06 37.16 0.26 -2.53 16 4 C 0.04 0.91 3.82 -27.89 -0.11 0.80 16 5 C -0.51 -13.79 7.80 -34.44 -0.27 -14.06 16 6 H 0.06 1.51 6.06 -52.48 -0.32 1.19 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.07 1.22 4.51 -3.83 -0.02 1.20 16 14 N -0.54 -7.69 3.73 -234.74 -0.88 -8.57 16 15 C 0.05 0.59 3.08 -3.66 -0.01 0.58 16 16 C -0.10 -1.11 5.88 -27.06 -0.16 -1.27 16 17 C -0.13 -1.36 2.37 -90.33 -0.21 -1.58 16 18 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 19 C 0.06 0.61 7.53 36.70 0.28 0.88 16 20 O -0.39 -4.65 11.49 -35.23 -0.40 -5.06 16 21 C 0.06 0.61 7.45 37.07 0.28 0.89 16 22 C -0.13 -1.34 2.66 -89.92 -0.24 -1.58 16 23 H 0.10 1.14 8.02 -51.93 -0.42 0.73 16 24 C 0.08 0.90 5.35 -4.12 -0.02 0.88 16 25 H 0.05 1.07 6.59 -51.93 -0.34 0.73 16 26 H 0.05 0.77 5.22 -51.93 -0.27 0.50 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 29 H 0.05 0.82 3.72 -51.93 -0.19 0.63 16 30 H 0.05 0.97 7.39 -51.93 -0.38 0.58 16 31 H 0.01 0.33 8.11 -51.93 -0.42 -0.09 16 32 H 0.01 0.41 8.13 -51.93 -0.42 -0.02 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 35 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 36 H 0.11 1.56 3.51 -51.93 -0.18 1.38 16 37 H 0.03 0.37 7.13 -51.93 -0.37 0.00 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.81 8.04 -51.93 -0.42 0.40 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.39 7.96 -51.93 -0.41 -0.02 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -29.27 327.29 -8.65 -37.92 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.89 Total: -2.16 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -0.12 Total: -17.54 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.14 Total: -34.64 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.40 Total: -5.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.27 -8.65 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.837 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds