Wall clock time and date at job start Mon Mar 30 2020 07:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46625 * 2 1 4 4 C 1.52998 * 109.46855 * 119.99368 * 2 1 3 5 5 C 1.50697 * 109.47659 * 300.00180 * 4 2 1 6 6 H 1.08008 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00530 * 180.27682 * 5 4 2 8 8 N 1.31515 * 119.99569 * 359.72539 * 7 5 4 9 9 Si 1.86790 * 120.00489 * 179.72434 * 7 5 4 10 10 H 1.48506 * 109.46970 * 59.99963 * 9 7 5 11 11 H 1.48496 * 109.47531 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47357 * 300.00315 * 9 7 5 13 13 C 1.52997 * 109.47074 * 239.99944 * 2 1 3 14 14 N 1.46892 * 109.47370 * 41.58240 * 13 2 1 15 15 C 1.46266 * 110.99842 * 52.28935 * 14 13 2 16 16 C 1.53980 * 112.11733 * 180.65325 * 15 14 13 17 17 C 1.51334 * 106.63049 * 304.22255 * 16 15 14 18 18 H 1.08999 * 109.93088 * 304.45253 * 17 16 15 19 19 C 1.52107 * 118.46164 * 176.10550 * 17 16 15 20 20 O 1.44648 * 106.02817 * 215.37724 * 19 17 16 21 21 C 1.45077 * 109.64214 * 3.35431 * 20 19 17 22 22 C 1.52829 * 103.58012 * 24.64271 * 21 20 19 23 23 H 1.09001 * 111.38293 * 75.51999 * 22 21 20 24 24 C 1.47808 * 110.99952 * 180.21834 * 14 13 2 25 25 H 1.09000 * 109.47405 * 300.00027 * 1 2 3 26 26 H 1.08998 * 109.47408 * 60.00747 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47316 * 153.08824 * 3 2 1 29 29 H 1.09004 * 109.46770 * 273.07902 * 3 2 1 30 30 H 1.08993 * 109.47984 * 33.08360 * 3 2 1 31 31 H 1.09005 * 109.46921 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47214 * 60.00230 * 4 2 1 33 33 H 0.97005 * 120.00062 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46985 * 161.59065 * 13 2 1 35 35 H 1.09000 * 109.46986 * 281.58067 * 13 2 1 36 36 H 1.08994 * 108.95665 * 301.33957 * 15 14 13 37 37 H 1.08999 * 108.95557 * 59.98290 * 15 14 13 38 38 H 1.09003 * 110.02124 * 184.93839 * 16 15 14 39 39 H 1.09004 * 110.09584 * 63.54279 * 16 15 14 40 40 H 1.09000 * 110.14358 * 334.51331 * 19 17 16 41 41 H 1.08996 * 110.14104 * 96.17221 * 19 17 16 42 42 H 1.09001 * 110.59929 * 266.12666 * 21 20 19 43 43 H 1.09000 * 110.60288 * 143.16657 * 21 20 19 44 44 H 1.08999 * 110.00340 * 294.48471 * 24 14 13 45 45 H 1.08997 * 110.00157 * 55.88552 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9163 0.8672 2.3806 7 6 1.8753 -0.4783 3.7321 8 7 2.6315 -1.5475 3.8528 9 14 1.2590 0.4068 5.2571 10 1 -0.2260 0.4074 5.2629 11 1 1.7579 -0.2903 6.4697 12 1 1.7545 1.8068 5.2513 13 6 2.0400 -0.7213 -1.2492 14 7 1.2266 -0.3288 -2.4077 15 6 1.1534 1.1271 -2.5276 16 6 0.2924 1.5676 -3.7259 17 6 0.8810 0.9011 -4.9504 18 1 1.9375 1.1540 -5.0394 19 6 0.1750 1.0840 -6.2852 20 8 0.3334 -0.1661 -6.9954 21 6 1.0204 -1.1239 -6.1496 22 6 0.7170 -0.6348 -4.7338 23 1 -0.3046 -0.8761 -4.4404 24 6 1.6880 -1.0116 -3.6347 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.0250 1.4797 0.4651 29 1 2.1089 1.8034 -1.0262 30 1 1.3493 2.0721 0.5609 31 1 3.1300 -0.7207 1.2496 32 1 1.6766 -1.7488 1.2494 33 1 2.8694 -1.8764 4.7338 34 1 3.0804 -0.4489 -1.4267 35 1 1.9666 -1.7988 -1.1020 36 1 0.7238 1.5366 -1.6134 37 1 2.1613 1.5233 -2.6515 38 1 0.3321 2.6514 -3.8355 39 1 -0.7390 1.2446 -3.5847 40 1 -0.8827 1.2931 -6.1249 41 1 0.6371 1.8965 -6.8459 42 1 2.0934 -1.1037 -6.3405 43 1 0.6212 -2.1265 -6.3028 44 1 2.6923 -0.6758 -3.8930 45 1 1.6816 -2.0912 -3.4854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597230464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:34 Heat of formation + Delta-G solvation = -50.613535 kcal Electronic energy + Delta-G solvation = -21790.553800 eV Core-core repulsion = 18807.488447 eV Total energy + Delta-G solvation = -2983.065353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59301 -39.68570 -36.95344 -34.65140 -33.45778 -32.37166 -29.65119 -28.99541 -27.93615 -27.27077 -25.76713 -24.27141 -22.64597 -22.28711 -21.05881 -19.56622 -18.29660 -17.18693 -16.92401 -16.67821 -16.34901 -16.06137 -16.01970 -15.28832 -14.87308 -14.76613 -14.52828 -14.14017 -14.06261 -13.95488 -13.48732 -13.44834 -13.03126 -12.74490 -12.66648 -12.47631 -12.28362 -12.26631 -12.13190 -11.96533 -11.83702 -11.73064 -11.39681 -11.33064 -11.01185 -10.83718 -10.52459 -10.49839 -10.43394 -9.11735 -8.13807 -6.21014 1.40648 1.42834 1.50135 2.43588 2.82848 2.91720 3.20070 3.29606 3.71824 3.84006 4.10393 4.15140 4.19538 4.30757 4.34049 4.37921 4.42826 4.47859 4.58036 4.62888 4.71477 4.78179 4.83864 4.86516 4.90520 4.92322 4.94213 4.99825 5.09721 5.11976 5.17701 5.19926 5.30934 5.40515 5.49127 5.57286 5.58034 5.65892 5.88002 5.89364 5.91715 6.16281 6.31464 6.38032 6.94005 7.46464 8.98372 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.003956 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.811788 B = 7075.403317 C = 7368.578955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.146 4.146 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.082 3.918 14 N -0.547 5.547 15 C 0.041 3.959 16 C -0.097 4.097 17 C -0.128 4.128 18 H 0.077 0.923 19 C 0.061 3.939 20 O -0.411 6.411 21 C 0.063 3.937 22 C -0.120 4.120 23 H 0.089 0.911 24 C 0.076 3.924 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.049 0.951 31 H -0.017 1.017 32 H -0.017 1.017 33 H 0.260 0.740 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.037 0.963 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 5.870 -19.373 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.056 4.056 3 C -0.203 4.203 4 C 0.005 3.995 5 C -0.552 4.552 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.045 4.045 14 N -0.272 5.272 15 C -0.085 4.085 16 C -0.135 4.135 17 C -0.146 4.146 18 H 0.095 0.905 19 C -0.015 4.015 20 O -0.332 6.332 21 C -0.014 4.014 22 C -0.139 4.139 23 H 0.107 0.893 24 C -0.051 4.051 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.055 0.945 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.303 5.588 -19.378 20.621 hybrid contribution 1.056 0.126 1.482 1.824 sum -3.246 5.713 -17.896 19.064 Atomic orbital electron populations 1.21677 0.94021 1.00351 1.00490 1.20498 0.96479 0.95386 0.93204 1.22413 0.99951 0.95730 1.02199 1.19040 0.93802 0.94015 0.92649 1.21570 1.30172 1.12017 0.91480 0.91771 1.25912 0.95676 0.95912 1.02555 1.70102 1.38780 1.24993 1.24083 0.85642 0.78941 0.78800 0.78532 1.19315 1.21361 1.19287 1.21945 0.93593 0.99240 0.89750 1.61053 1.54120 1.08895 1.03130 1.22775 0.98304 0.87238 1.00227 1.21381 0.99567 1.00816 0.91690 1.22399 1.01011 0.96167 0.95064 0.90470 1.22788 1.00844 0.86491 0.91386 1.88898 1.79558 1.23713 1.41012 1.23045 0.97331 0.93264 0.87744 1.22517 1.01148 0.95845 0.94367 0.89313 1.21692 0.95579 0.99282 0.88524 0.94550 0.90587 0.95167 0.95322 0.89409 0.93217 0.99910 0.99821 0.93169 0.95857 0.92328 0.88318 0.95306 0.89217 0.90753 0.90631 0.89889 0.91273 0.88519 0.94455 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.03 7.49 71.98 0.54 -3.49 16 2 C -0.06 -2.17 0.53 -52.18 -0.03 -2.20 16 3 C -0.15 -5.23 7.06 71.98 0.51 -4.72 16 4 C 0.04 2.21 3.82 29.85 0.11 2.32 16 5 C -0.51 -28.51 7.80 25.60 0.20 -28.31 16 6 H 0.06 3.40 6.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.78 4.51 86.30 0.39 3.17 16 14 N -0.55 -14.67 3.73 -896.60 -3.35 -18.02 16 15 C 0.04 0.97 3.08 86.75 0.27 1.24 16 16 C -0.10 -1.73 5.88 30.38 0.18 -1.55 16 17 C -0.13 -2.23 2.37 -10.60 -0.03 -2.26 16 18 H 0.08 1.38 7.92 -2.39 -0.02 1.36 16 19 C 0.06 1.03 7.53 71.69 0.54 1.57 16 20 O -0.41 -8.82 11.49 -148.98 -1.71 -10.53 16 21 C 0.06 1.12 7.45 71.93 0.54 1.65 16 22 C -0.12 -2.31 2.66 -10.34 -0.03 -2.33 16 23 H 0.09 1.90 8.02 -2.39 -0.02 1.88 16 24 C 0.08 1.70 5.35 85.61 0.46 2.16 16 25 H 0.04 1.45 6.59 -2.39 -0.02 1.43 16 26 H 0.08 2.37 5.22 -2.39 -0.01 2.35 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 1.12 7.86 -2.39 -0.02 1.10 16 29 H 0.09 2.53 3.72 -2.39 -0.01 2.52 16 30 H 0.05 1.78 7.39 -2.39 -0.02 1.76 16 31 H -0.02 -1.00 8.11 -2.38 -0.02 -1.02 16 32 H -0.02 -0.95 8.13 -2.39 -0.02 -0.97 16 33 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.02 0.79 8.01 -2.39 -0.02 0.77 16 35 H 0.06 2.12 8.00 -2.39 -0.02 2.10 16 36 H 0.10 2.54 3.51 -2.39 -0.01 2.53 16 37 H 0.03 0.69 7.13 -2.39 -0.02 0.67 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 40 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 0.82 7.96 -2.39 -0.02 0.80 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -63.80 327.29 2.31 -61.49 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.94 Total: 10.36 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.11 Total: -32.50 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.06 Total: -75.30 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -1.71 Total: -10.53 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.80 2.31 -61.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.873 kcal (2) G-P(sol) polarization free energy of solvation -63.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds