Wall clock time and date at job start Mon Mar 30 2020 07:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 C 1.53002 * 109.47123 * 240.00294 * 2 1 3 5 5 C 1.50693 * 109.47366 * 59.99854 * 4 2 1 6 6 H 1.08002 * 120.00000 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00462 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99544 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00372 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 119.99937 * 9 7 5 12 12 H 1.48500 * 109.47332 * 240.00114 * 9 7 5 13 13 C 1.53000 * 109.47197 * 120.00522 * 2 1 3 14 14 N 1.46907 * 109.46944 * 296.12273 * 13 2 1 15 15 C 1.47161 * 111.00153 * 209.83100 * 14 13 2 16 16 C 1.52326 * 108.13283 * 171.21822 * 15 14 13 17 17 C 1.51224 * 111.50895 * 58.76843 * 16 15 14 18 18 H 1.09002 * 109.68780 * 187.08051 * 17 16 15 19 19 C 1.53641 * 112.46389 * 64.73282 * 17 16 15 20 20 O 1.43795 * 106.77395 * 214.83718 * 19 17 16 21 21 C 1.43942 * 109.63107 * 358.72845 * 20 19 17 22 22 C 1.54518 * 112.41087 * 309.39984 * 17 16 15 23 23 H 1.09001 * 112.94829 * 278.87469 * 22 17 16 24 24 C 1.46482 * 110.99735 * 86.98721 * 14 13 2 25 25 H 1.08998 * 109.46971 * 310.95003 * 1 2 3 26 26 H 1.09000 * 109.47342 * 70.94503 * 1 2 3 27 27 H 1.09000 * 109.47276 * 190.94699 * 1 2 3 28 28 H 1.09001 * 109.47581 * 175.57121 * 3 2 1 29 29 H 1.09001 * 109.47071 * 295.57766 * 3 2 1 30 30 H 1.09005 * 109.46807 * 55.57520 * 3 2 1 31 31 H 1.09003 * 109.47241 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47135 * 300.00190 * 4 2 1 33 33 H 0.96995 * 119.99693 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47422 * 176.12852 * 13 2 1 35 35 H 1.08993 * 109.47758 * 56.12282 * 13 2 1 36 36 H 1.08996 * 109.70374 * 290.89206 * 15 14 13 37 37 H 1.08998 * 109.70120 * 51.51276 * 15 14 13 38 38 H 1.09001 * 109.18179 * 298.10110 * 16 15 14 39 39 H 1.08997 * 108.77362 * 179.17362 * 16 15 14 40 40 H 1.09004 * 110.00456 * 334.16463 * 19 17 16 41 41 H 1.08998 * 110.00184 * 95.51144 * 19 17 16 42 42 H 1.09000 * 110.43222 * 144.85745 * 21 20 19 43 43 H 1.09008 * 110.42515 * 267.21834 * 21 20 19 44 44 H 1.09001 * 109.17036 * 66.75752 * 24 14 13 45 45 H 1.08995 * 109.17398 * 307.53792 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 0.4236 1.5659 -4.8530 11 1 2.4034 0.8647 -6.0656 12 1 0.4224 -0.5338 -6.0654 13 6 2.0400 -0.7214 1.2492 14 7 1.6282 0.0230 2.4469 15 6 2.5984 -0.1563 3.5388 16 6 2.2319 0.8058 4.6614 17 6 0.8280 0.5594 5.1665 18 1 0.5513 1.3386 5.8768 19 6 0.6748 -0.8199 5.8257 20 8 -0.6509 -1.2828 5.5163 21 6 -1.3428 -0.2860 4.7419 22 6 -0.2090 0.5061 4.0222 23 1 -0.5233 1.4946 3.6871 24 6 0.2926 -0.3873 2.8865 25 1 -0.3633 0.6735 0.7762 26 1 -0.3634 0.3355 -0.9713 27 1 -0.3634 -1.0090 0.1952 28 1 3.1272 1.4435 0.0794 29 1 1.7429 1.9329 -0.9270 30 1 1.6134 1.9787 0.8477 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7489 -1.2494 33 1 2.8601 -1.8831 -4.7337 34 1 3.1278 -0.7819 1.2152 35 1 1.6211 -1.7270 1.2846 36 1 2.5550 -1.1823 3.9041 37 1 3.6030 0.0637 3.1776 38 1 2.3048 1.8294 4.2939 39 1 2.9359 0.6712 5.4826 40 1 1.4147 -1.5107 5.4213 41 1 0.7966 -0.7327 6.9054 42 1 -1.9989 -0.7594 4.0115 43 1 -1.9147 0.3735 5.3947 44 1 0.3315 -1.4198 3.2337 45 1 -0.3977 -0.3190 2.0458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597230465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:40 Heat of formation + Delta-G solvation = -53.569518 kcal Electronic energy + Delta-G solvation = -21967.123771 eV Core-core repulsion = 18983.930238 eV Total energy + Delta-G solvation = -2983.193534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68844 -37.90452 -35.69179 -32.99241 -31.84698 -31.65569 -28.02474 -26.89197 -26.81041 -25.94563 -24.04187 -23.24965 -21.95155 -21.58755 -19.01405 -17.88273 -16.59277 -16.16516 -15.95319 -15.45482 -15.15133 -15.05237 -14.44815 -14.02051 -13.61534 -13.21674 -13.01108 -12.71203 -12.54301 -12.50179 -12.16256 -12.01782 -11.96890 -11.48662 -11.19809 -10.97069 -10.82587 -10.74962 -10.67691 -10.50786 -10.45295 -10.27101 -10.21811 -9.85714 -9.60236 -9.58548 -8.92996 -8.80870 -8.29881 -7.93225 -5.94471 -3.94159 3.33541 3.41468 3.44918 3.71814 4.12834 4.30963 4.50948 4.56677 4.78926 5.03885 5.05962 5.12972 5.28277 5.35104 5.41350 5.45554 5.48633 5.60282 5.63620 5.67468 5.80308 5.84977 5.89377 5.97994 6.03133 6.09238 6.14405 6.21507 6.31630 6.36718 6.58764 6.74633 6.80803 6.84098 6.89043 7.25296 7.27114 7.31176 7.41843 7.51913 7.74098 7.89128 8.06415 8.51203 9.11525 9.68459 11.17313 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.004284 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071463 B = 6533.860675 C = 6734.545087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.113 4.113 4 C 0.032 3.968 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.064 3.936 14 N -0.523 5.523 15 C 0.049 3.951 16 C -0.101 4.101 17 C -0.116 4.116 18 H 0.077 0.923 19 C 0.053 3.947 20 O -0.386 6.386 21 C 0.050 3.950 22 C -0.109 4.109 23 H 0.102 0.898 24 C 0.042 3.958 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 4.138 18.565 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.051 4.051 3 C -0.170 4.170 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.063 4.063 14 N -0.247 5.247 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.135 4.135 18 H 0.095 0.905 19 C -0.023 4.023 20 O -0.305 6.305 21 C -0.027 4.027 22 C -0.128 4.128 23 H 0.121 0.879 24 C -0.086 4.086 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.539 4.324 18.379 19.210 hybrid contribution -0.092 -0.349 -0.746 0.828 sum -3.631 3.975 17.634 18.437 Atomic orbital electron populations 1.21971 0.96274 0.99293 1.01334 1.20550 0.94761 0.95995 0.93844 1.21572 0.99214 0.95947 1.00316 1.19133 0.96021 0.95057 0.90322 1.21277 1.30609 1.11809 0.90585 0.92189 1.25016 0.95441 0.95123 0.99041 1.69981 1.37416 1.23272 1.23132 0.86619 0.78602 0.79742 0.83541 1.19762 1.21184 1.21217 1.22364 0.99633 0.94597 0.89714 1.62246 1.01228 1.56879 1.04298 1.22153 0.96657 0.97106 0.92031 1.20899 0.94492 1.01102 0.97439 1.22028 0.96878 0.97416 0.97181 0.90461 1.23162 0.85091 0.95000 0.99083 1.88552 1.26215 1.42275 1.73496 1.23706 0.94697 0.90557 0.93764 1.22923 0.94547 1.00158 0.95168 0.87942 1.22472 0.92476 0.95886 0.97764 0.93870 0.91663 0.94556 0.94624 0.92689 0.93852 0.96809 0.96987 0.93259 0.91743 0.94928 0.95136 0.90522 0.90573 0.91889 0.91271 0.91695 0.89488 0.92284 0.94815 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 6.81 37.16 0.25 -2.21 16 2 C -0.05 -1.01 0.60 -154.51 -0.09 -1.11 16 3 C -0.11 -2.18 8.01 37.16 0.30 -1.88 16 4 C 0.03 0.81 4.04 -27.89 -0.11 0.70 16 5 C -0.50 -13.78 7.44 -34.44 -0.26 -14.04 16 6 H 0.06 1.60 5.76 -52.49 -0.30 1.30 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.11 4.23 -3.82 -0.02 1.09 16 14 N -0.52 -7.56 3.65 -235.22 -0.86 -8.42 16 15 C 0.05 0.60 5.26 -4.03 -0.02 0.58 16 16 C -0.10 -1.03 5.47 -27.97 -0.15 -1.18 16 17 C -0.12 -1.16 2.96 -90.39 -0.27 -1.43 16 18 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 19 C 0.05 0.57 6.70 37.49 0.25 0.82 16 20 O -0.39 -4.92 10.95 -35.23 -0.39 -5.31 16 21 C 0.05 0.53 7.01 38.72 0.27 0.80 16 22 C -0.11 -1.20 3.94 -88.29 -0.35 -1.55 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.04 0.56 3.79 -4.08 -0.02 0.55 16 25 H 0.04 0.71 6.22 -51.93 -0.32 0.39 16 26 H 0.06 1.35 6.34 -51.93 -0.33 1.02 16 27 H 0.04 0.66 7.70 -51.93 -0.40 0.26 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.15 6.48 -51.93 -0.34 0.81 16 30 H 0.04 0.76 7.63 -51.93 -0.40 0.36 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 1.13 7.60 -51.93 -0.39 0.73 16 35 H 0.03 0.58 7.81 -51.93 -0.41 0.18 16 36 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 37 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.77 6.37 -51.93 -0.33 0.44 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.89 8.01 -51.93 -0.42 0.48 16 43 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.03 0.49 7.04 -51.93 -0.37 0.13 16 45 H 0.10 1.39 4.10 -51.93 -0.21 1.18 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -29.53 327.52 -8.80 -38.33 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.90 Total: -2.52 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.31 Total: -17.43 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.12 Total: -34.59 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.39 Total: -5.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.53 -8.80 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.235 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds