Wall clock time and date at job start Mon Mar 30 2020 07:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 C 1.53002 * 109.47123 * 240.00294 * 2 1 3 5 5 C 1.50693 * 109.47366 * 59.99854 * 4 2 1 6 6 H 1.08002 * 120.00000 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00462 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99544 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00372 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 119.99937 * 9 7 5 12 12 H 1.48500 * 109.47332 * 240.00114 * 9 7 5 13 13 C 1.53000 * 109.47197 * 120.00522 * 2 1 3 14 14 N 1.46907 * 109.46944 * 296.12273 * 13 2 1 15 15 C 1.47161 * 111.00153 * 209.83100 * 14 13 2 16 16 C 1.52326 * 108.13283 * 171.21822 * 15 14 13 17 17 C 1.51224 * 111.50895 * 58.76843 * 16 15 14 18 18 H 1.09002 * 109.68780 * 187.08051 * 17 16 15 19 19 C 1.53641 * 112.46389 * 64.73282 * 17 16 15 20 20 O 1.43795 * 106.77395 * 214.83718 * 19 17 16 21 21 C 1.43942 * 109.63107 * 358.72845 * 20 19 17 22 22 C 1.54518 * 112.41087 * 309.39984 * 17 16 15 23 23 H 1.09001 * 112.94829 * 278.87469 * 22 17 16 24 24 C 1.46482 * 110.99735 * 86.98721 * 14 13 2 25 25 H 1.08998 * 109.46971 * 310.95003 * 1 2 3 26 26 H 1.09000 * 109.47342 * 70.94503 * 1 2 3 27 27 H 1.09000 * 109.47276 * 190.94699 * 1 2 3 28 28 H 1.09001 * 109.47581 * 175.57121 * 3 2 1 29 29 H 1.09001 * 109.47071 * 295.57766 * 3 2 1 30 30 H 1.09005 * 109.46807 * 55.57520 * 3 2 1 31 31 H 1.09003 * 109.47241 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47135 * 300.00190 * 4 2 1 33 33 H 0.96995 * 119.99693 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47422 * 176.12852 * 13 2 1 35 35 H 1.08993 * 109.47758 * 56.12282 * 13 2 1 36 36 H 1.08996 * 109.70374 * 290.89206 * 15 14 13 37 37 H 1.08998 * 109.70120 * 51.51276 * 15 14 13 38 38 H 1.09001 * 109.18179 * 298.10110 * 16 15 14 39 39 H 1.08997 * 108.77362 * 179.17362 * 16 15 14 40 40 H 1.09004 * 110.00456 * 334.16463 * 19 17 16 41 41 H 1.08998 * 110.00184 * 95.51144 * 19 17 16 42 42 H 1.09000 * 110.43222 * 144.85745 * 21 20 19 43 43 H 1.09008 * 110.42515 * 267.21834 * 21 20 19 44 44 H 1.09001 * 109.17036 * 66.75752 * 24 14 13 45 45 H 1.08995 * 109.17398 * 307.53792 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 0.4236 1.5659 -4.8530 11 1 2.4034 0.8647 -6.0656 12 1 0.4224 -0.5338 -6.0654 13 6 2.0400 -0.7214 1.2492 14 7 1.6282 0.0230 2.4469 15 6 2.5984 -0.1563 3.5388 16 6 2.2319 0.8058 4.6614 17 6 0.8280 0.5594 5.1665 18 1 0.5513 1.3386 5.8768 19 6 0.6748 -0.8199 5.8257 20 8 -0.6509 -1.2828 5.5163 21 6 -1.3428 -0.2860 4.7419 22 6 -0.2090 0.5061 4.0222 23 1 -0.5233 1.4946 3.6871 24 6 0.2926 -0.3873 2.8865 25 1 -0.3633 0.6735 0.7762 26 1 -0.3634 0.3355 -0.9713 27 1 -0.3634 -1.0090 0.1952 28 1 3.1272 1.4435 0.0794 29 1 1.7429 1.9329 -0.9270 30 1 1.6134 1.9787 0.8477 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7489 -1.2494 33 1 2.8601 -1.8831 -4.7337 34 1 3.1278 -0.7819 1.2152 35 1 1.6211 -1.7270 1.2846 36 1 2.5550 -1.1823 3.9041 37 1 3.6030 0.0637 3.1776 38 1 2.3048 1.8294 4.2939 39 1 2.9359 0.6712 5.4826 40 1 1.4147 -1.5107 5.4213 41 1 0.7966 -0.7327 6.9054 42 1 -1.9989 -0.7594 4.0115 43 1 -1.9147 0.3735 5.3947 44 1 0.3315 -1.4198 3.2337 45 1 -0.3977 -0.3190 2.0458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597230465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:39 Heat of formation + Delta-G solvation = -71.167651 kcal Electronic energy + Delta-G solvation = -21967.886884 eV Core-core repulsion = 18983.930238 eV Total energy + Delta-G solvation = -2983.956646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62275 -39.23698 -37.01127 -34.66204 -33.36505 -32.57973 -29.25155 -28.59653 -28.21820 -27.38560 -25.31138 -24.70880 -23.21094 -22.55090 -19.91849 -19.53367 -18.32876 -17.44117 -16.83464 -16.70340 -16.46247 -16.07494 -16.05976 -15.32969 -14.97621 -14.55141 -14.18358 -14.08496 -13.88011 -13.81458 -13.59435 -13.40804 -12.95021 -12.92671 -12.68764 -12.56018 -12.37603 -12.22212 -12.14782 -11.94741 -11.84269 -11.56889 -11.42156 -11.26992 -11.18083 -10.83987 -10.51370 -10.49995 -10.44914 -9.15864 -8.13189 -6.19908 1.40699 1.41730 1.53974 2.44393 2.84341 3.08567 3.20882 3.47703 3.72315 3.94779 4.07108 4.15017 4.20506 4.26767 4.36643 4.38059 4.42091 4.46595 4.62012 4.66070 4.71375 4.78062 4.82558 4.86423 4.93942 4.99136 5.03095 5.08390 5.11816 5.14699 5.23914 5.25512 5.30655 5.37845 5.53844 5.56843 5.63711 5.69712 5.89380 5.94817 6.00299 6.16572 6.25668 6.39421 6.95379 7.47318 8.99494 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.004284 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.071463 B = 6533.860675 C = 6734.545087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 C -0.102 4.102 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.075 3.925 14 N -0.521 5.521 15 C 0.045 3.955 16 C -0.095 4.095 17 C -0.111 4.111 18 H 0.099 0.901 19 C 0.050 3.950 20 O -0.411 6.411 21 C 0.049 3.951 22 C -0.106 4.106 23 H 0.115 0.885 24 C 0.044 3.956 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.067 0.933 31 H -0.016 1.016 32 H -0.020 1.020 33 H 0.259 0.741 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 6.204 20.158 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.048 4.048 3 C -0.159 4.159 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.053 4.053 14 N -0.244 5.244 15 C -0.083 4.083 16 C -0.133 4.133 17 C -0.130 4.130 18 H 0.118 0.882 19 C -0.026 4.026 20 O -0.331 6.331 21 C -0.028 4.028 22 C -0.125 4.125 23 H 0.133 0.867 24 C -0.084 4.084 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.002 0.998 32 H -0.001 1.001 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.037 0.963 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.493 6.404 19.992 21.468 hybrid contribution 0.226 -1.053 -1.198 1.611 sum -4.267 5.351 18.794 20.001 Atomic orbital electron populations 1.21870 0.95038 0.99860 1.01078 1.20416 0.95682 0.96146 0.92571 1.21453 0.98973 0.95144 1.00339 1.19017 0.94021 0.93924 0.92910 1.21641 1.30069 1.11805 0.91377 0.91510 1.25920 0.95727 0.95897 1.02576 1.70122 1.38993 1.25030 1.23930 0.85525 0.78132 0.78833 0.79358 1.18353 1.20831 1.20905 1.22080 0.98996 0.93916 0.90355 1.62223 1.02283 1.55846 1.04068 1.22260 0.96104 0.97860 0.92057 1.20866 0.95178 1.00200 0.97021 1.22038 0.96336 0.97594 0.96994 0.88226 1.23254 0.84071 0.95112 1.00166 1.88526 1.27185 1.43569 1.73845 1.23805 0.94536 0.90448 0.93980 1.22914 0.95115 1.00041 0.94422 0.86726 1.22448 0.91625 0.95907 0.98373 0.90983 0.93761 0.94759 0.95101 0.94480 0.91375 0.99784 1.00136 0.93215 0.92399 0.96241 0.95461 0.90600 0.90369 0.89720 0.92401 0.89969 0.89699 0.90188 0.96347 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 6.81 71.98 0.49 -4.01 16 2 C -0.05 -1.91 0.60 -52.18 -0.03 -1.94 16 3 C -0.10 -3.84 8.01 71.98 0.58 -3.27 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.44 7.44 25.60 0.19 -28.25 16 6 H 0.07 3.57 5.76 -2.91 -0.02 3.55 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 9 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.07 2.62 4.23 86.30 0.36 2.98 16 14 N -0.52 -14.40 3.65 -898.11 -3.28 -17.68 16 15 C 0.04 1.03 5.26 86.03 0.45 1.49 16 16 C -0.09 -1.62 5.47 29.79 0.16 -1.45 16 17 C -0.11 -1.84 2.96 -10.64 -0.03 -1.87 16 18 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 19 C 0.05 0.95 6.70 72.20 0.48 1.43 16 20 O -0.41 -9.76 10.95 -148.98 -1.63 -11.40 16 21 C 0.05 0.92 7.01 72.99 0.51 1.43 16 22 C -0.11 -2.04 3.94 -9.28 -0.04 -2.08 16 23 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 24 C 0.04 1.13 3.79 86.37 0.33 1.46 16 25 H 0.07 2.24 6.22 -2.39 -0.01 2.22 16 26 H 0.04 1.81 6.34 -2.39 -0.02 1.79 16 27 H 0.03 1.25 7.70 -2.39 -0.02 1.23 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.51 6.48 -2.39 -0.02 1.50 16 30 H 0.07 2.22 7.63 -2.38 -0.02 2.21 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.06 2.08 7.60 -2.39 -0.02 2.06 16 35 H 0.02 0.72 7.81 -2.39 -0.02 0.70 16 36 H 0.03 0.65 6.58 -2.39 -0.02 0.64 16 37 H 0.08 1.76 7.84 -2.39 -0.02 1.74 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.21 6.37 -2.38 -0.02 1.20 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 43 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.02 0.53 7.04 -2.39 -0.02 0.51 16 45 H 0.09 2.38 4.10 -2.39 -0.01 2.37 16 Total: -1.00 -64.71 327.52 2.39 -62.32 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.94 Total: 9.41 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 4.04 Total: -31.73 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -3.00 Total: -75.27 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.63 Total: -11.40 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.71 2.39 -62.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.849 kcal (2) G-P(sol) polarization free energy of solvation -64.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds