Wall clock time and date at job start Mon Mar 30 2020 07:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.53001 * 109.46904 * 240.00247 * 2 1 3 5 5 C 1.50696 * 109.47370 * 59.99909 * 4 2 1 6 6 H 1.08005 * 120.00078 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00576 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99609 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47442 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46921 * 209.99859 * 9 7 5 12 12 H 1.48496 * 109.47407 * 329.99857 * 9 7 5 13 13 C 1.52997 * 109.47199 * 120.00218 * 2 1 3 14 14 N 1.46907 * 109.46896 * 294.70866 * 13 2 1 15 15 C 1.47175 * 110.99590 * 209.19336 * 14 13 2 16 16 C 1.52680 * 108.47879 * 171.15200 * 15 14 13 17 17 C 1.53050 * 110.68799 * 61.40610 * 16 15 14 18 18 H 1.08999 * 112.59773 * 76.00767 * 17 16 15 19 19 C 1.55782 * 106.45774 * 201.19666 * 17 16 15 20 20 O 1.44023 * 104.81133 * 77.27939 * 19 17 16 21 21 C 1.43613 * 109.76723 * 25.21980 * 20 19 17 22 22 C 1.53457 * 106.93920 * 358.39998 * 21 20 19 23 23 H 1.08998 * 108.84114 * 93.20886 * 22 21 20 24 24 C 1.46658 * 110.99993 * 86.76846 * 14 13 2 25 25 H 1.08997 * 109.47311 * 312.28166 * 1 2 3 26 26 H 1.09002 * 109.47108 * 72.28496 * 1 2 3 27 27 H 1.08998 * 109.47138 * 192.28443 * 1 2 3 28 28 H 1.08994 * 109.47000 * 175.67845 * 3 2 1 29 29 H 1.09000 * 109.46886 * 295.67426 * 3 2 1 30 30 H 1.08998 * 109.46777 * 55.67026 * 3 2 1 31 31 H 1.08999 * 109.46970 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47104 * 299.99649 * 4 2 1 33 33 H 0.96999 * 120.00279 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47005 * 174.71045 * 13 2 1 35 35 H 1.08996 * 109.47264 * 54.70375 * 13 2 1 36 36 H 1.09000 * 109.63445 * 290.84548 * 15 14 13 37 37 H 1.08996 * 109.63757 * 51.45217 * 15 14 13 38 38 H 1.08999 * 109.23186 * 181.71772 * 16 15 14 39 39 H 1.09004 * 109.23335 * 301.13654 * 16 15 14 40 40 H 1.09000 * 110.36558 * 196.27750 * 19 17 16 41 41 H 1.08992 * 110.36538 * 318.58930 * 19 17 16 42 42 H 1.09006 * 109.96331 * 239.03040 * 21 20 19 43 43 H 1.08995 * 109.99832 * 117.78663 * 21 20 19 44 44 H 1.09003 * 109.03638 * 304.51996 * 24 14 13 45 45 H 1.08999 * 109.03888 * 63.44962 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9450 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9495 11 1 3.7374 -1.9075 -5.1560 12 1 3.8650 -2.0898 -2.7412 13 6 2.0400 -0.7213 1.2492 14 7 1.6574 0.0410 2.4453 15 6 2.6286 -0.1610 3.5324 16 6 2.3045 0.8173 4.6589 17 6 0.9026 0.5565 5.2149 18 1 0.8642 -0.3221 5.8589 19 6 0.4571 1.8707 5.9229 20 8 0.0750 2.7546 4.8519 21 6 -0.3177 1.9857 3.7043 22 6 -0.1318 0.5073 4.0717 23 1 -1.0746 0.1191 4.4570 24 6 0.3153 -0.3353 2.9013 25 1 -0.3634 0.6914 0.7603 26 1 -0.3633 0.3127 -0.9790 27 1 -0.3633 -1.0041 0.2186 28 1 3.1272 1.4435 0.0774 29 1 1.7413 1.9335 -0.9262 30 1 1.6147 1.9782 0.8486 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 1.6672 -0.1928 -5.6868 34 1 3.1259 -0.8040 1.2030 35 1 1.6013 -1.7179 1.2979 36 1 2.5559 -1.1835 3.9031 37 1 3.6366 0.0269 3.1628 38 1 3.0357 0.6991 5.4586 39 1 2.3540 1.8362 4.2749 40 1 -0.3907 1.6786 6.5805 41 1 1.2864 2.2976 6.4868 42 1 0.3132 2.2397 2.8525 43 1 -1.3629 2.1810 3.4647 44 1 -0.3890 -0.2047 2.0797 45 1 0.3222 -1.3835 3.2000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597230466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:44 Heat of formation + Delta-G solvation = -50.957013 kcal Electronic energy + Delta-G solvation = -22094.023332 eV Core-core repulsion = 19110.943085 eV Total energy + Delta-G solvation = -2983.080247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59551 -38.04930 -35.72390 -32.81208 -31.85434 -31.77487 -28.43678 -27.51633 -26.75557 -25.88464 -23.96032 -22.85486 -21.92902 -21.59475 -19.13697 -17.84802 -16.78321 -16.53473 -15.90834 -15.48152 -15.30132 -14.64483 -14.30250 -14.10369 -13.55253 -13.37027 -13.13451 -12.80107 -12.69027 -12.48374 -12.32108 -12.10698 -11.96567 -11.62536 -11.18152 -10.98701 -10.96585 -10.87436 -10.79757 -10.48189 -10.39068 -10.35284 -10.08284 -9.76630 -9.63556 -9.46589 -9.15899 -8.90802 -8.48149 -8.04937 -5.98477 -3.94337 3.32473 3.40478 3.43746 3.81413 4.08151 4.25704 4.49375 4.53764 4.77616 5.00065 5.12789 5.18472 5.26721 5.34480 5.37613 5.39555 5.47725 5.55914 5.66585 5.71615 5.77346 5.78357 5.80027 5.92017 5.96747 6.02300 6.13958 6.15781 6.25977 6.31077 6.47842 6.66504 6.72446 6.84609 6.94206 7.11946 7.20175 7.23404 7.25343 7.38207 7.41082 7.53452 7.87532 8.61732 9.07745 9.64745 11.14625 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037054 B = 0.004616 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.466884 B = 6064.918901 C = 6373.293221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.115 4.115 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.079 0.921 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.520 5.520 15 C 0.051 3.949 16 C -0.109 4.109 17 C -0.119 4.119 18 H 0.091 0.909 19 C 0.055 3.945 20 O -0.385 6.385 21 C 0.059 3.941 22 C -0.112 4.112 23 H 0.075 0.925 24 C 0.047 3.953 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.013 0.987 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.875 -0.770 21.038 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C -0.172 4.172 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.065 4.065 14 N -0.244 5.244 15 C -0.077 4.077 16 C -0.147 4.147 17 C -0.138 4.138 18 H 0.110 0.890 19 C -0.022 4.022 20 O -0.305 6.305 21 C -0.017 4.017 22 C -0.131 4.131 23 H 0.094 0.906 24 C -0.081 4.081 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.872 -0.042 20.719 20.737 hybrid contribution 0.559 -2.139 -0.009 2.211 sum -0.314 -2.181 20.709 20.826 Atomic orbital electron populations 1.22007 0.95815 0.99230 1.02118 1.20352 0.95055 0.96134 0.92716 1.21590 0.99192 0.95531 1.00901 1.19629 0.95942 0.95260 0.93450 1.21139 1.31368 1.13195 0.88659 0.90339 1.25011 0.95802 0.96708 0.96040 1.69908 1.46160 1.40653 0.97817 0.86858 0.81320 0.84047 0.77476 1.20555 1.21586 1.19188 1.22401 0.99818 0.94362 0.89958 1.62358 1.01152 1.56461 1.04397 1.22153 0.96576 0.96901 0.92051 1.21543 0.94762 1.01260 0.97154 1.22848 0.96147 0.98129 0.96652 0.89046 1.23589 0.98837 0.89621 0.90164 1.88528 1.86979 1.31842 1.23128 1.23068 0.99968 0.89077 0.89575 1.21941 0.98548 0.96847 0.95735 0.90643 1.21926 0.92839 0.95812 0.97490 0.93684 0.90958 0.94630 0.94613 0.92106 0.93583 0.96832 0.97510 0.92914 0.91681 0.94921 0.95333 0.90657 0.91929 0.90210 0.92785 0.89976 0.89259 0.91931 0.88193 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 6.86 37.16 0.26 -2.19 16 2 C -0.04 -0.80 0.61 -154.51 -0.09 -0.89 16 3 C -0.11 -2.19 7.98 37.16 0.30 -1.89 16 4 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.85 7.98 -34.44 -0.27 -14.13 16 6 H 0.08 2.30 6.02 -52.48 -0.32 1.98 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.71 13.96 55.43 0.77 -26.93 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 0.99 4.22 -3.82 -0.02 0.97 16 14 N -0.52 -7.05 3.27 -236.07 -0.77 -7.82 16 15 C 0.05 0.60 5.41 -3.84 -0.02 0.58 16 16 C -0.11 -1.13 5.03 -26.87 -0.14 -1.26 16 17 C -0.12 -1.15 3.82 -88.45 -0.34 -1.48 16 18 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.05 0.54 7.00 38.64 0.27 0.81 16 20 O -0.39 -5.02 11.01 -35.23 -0.39 -5.41 16 21 C 0.06 0.73 6.89 37.39 0.26 0.98 16 22 C -0.11 -1.21 2.85 -90.74 -0.26 -1.46 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 C 0.05 0.58 4.26 -4.97 -0.02 0.56 16 25 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 26 H 0.07 1.52 6.31 -51.93 -0.33 1.19 16 27 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.31 6.49 -51.93 -0.34 0.97 16 30 H 0.05 0.80 7.58 -51.93 -0.39 0.41 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.06 1.04 7.60 -51.93 -0.39 0.64 16 35 H 0.03 0.52 7.75 -51.93 -0.40 0.11 16 36 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 37 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.97 7.26 -51.93 -0.38 0.59 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.72 7.98 -51.93 -0.41 0.30 16 42 H 0.09 1.25 7.63 -51.93 -0.40 0.85 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.32 4.13 -51.93 -0.21 1.11 16 45 H 0.03 0.36 8.07 -51.93 -0.42 -0.06 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -29.54 326.53 -8.41 -37.95 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -8.01 Total: -1.90 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.26 Total: -17.85 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.00 Total: -34.75 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.39 Total: -5.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.54 -8.41 -37.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.006 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds