Wall clock time and date at job start Mon Mar 30 2020 07:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.53001 * 109.46904 * 240.00247 * 2 1 3 5 5 C 1.50696 * 109.47370 * 59.99909 * 4 2 1 6 6 H 1.08005 * 120.00078 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00576 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99609 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47442 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46921 * 209.99859 * 9 7 5 12 12 H 1.48496 * 109.47407 * 329.99857 * 9 7 5 13 13 C 1.52997 * 109.47199 * 120.00218 * 2 1 3 14 14 N 1.46907 * 109.46896 * 294.70866 * 13 2 1 15 15 C 1.47175 * 110.99590 * 209.19336 * 14 13 2 16 16 C 1.52680 * 108.47879 * 171.15200 * 15 14 13 17 17 C 1.53050 * 110.68799 * 61.40610 * 16 15 14 18 18 H 1.08999 * 112.59773 * 76.00767 * 17 16 15 19 19 C 1.55782 * 106.45774 * 201.19666 * 17 16 15 20 20 O 1.44023 * 104.81133 * 77.27939 * 19 17 16 21 21 C 1.43613 * 109.76723 * 25.21980 * 20 19 17 22 22 C 1.53457 * 106.93920 * 358.39998 * 21 20 19 23 23 H 1.08998 * 108.84114 * 93.20886 * 22 21 20 24 24 C 1.46658 * 110.99993 * 86.76846 * 14 13 2 25 25 H 1.08997 * 109.47311 * 312.28166 * 1 2 3 26 26 H 1.09002 * 109.47108 * 72.28496 * 1 2 3 27 27 H 1.08998 * 109.47138 * 192.28443 * 1 2 3 28 28 H 1.08994 * 109.47000 * 175.67845 * 3 2 1 29 29 H 1.09000 * 109.46886 * 295.67426 * 3 2 1 30 30 H 1.08998 * 109.46777 * 55.67026 * 3 2 1 31 31 H 1.08999 * 109.46970 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47104 * 299.99649 * 4 2 1 33 33 H 0.96999 * 120.00279 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47005 * 174.71045 * 13 2 1 35 35 H 1.08996 * 109.47264 * 54.70375 * 13 2 1 36 36 H 1.09000 * 109.63445 * 290.84548 * 15 14 13 37 37 H 1.08996 * 109.63757 * 51.45217 * 15 14 13 38 38 H 1.08999 * 109.23186 * 181.71772 * 16 15 14 39 39 H 1.09004 * 109.23335 * 301.13654 * 16 15 14 40 40 H 1.09000 * 110.36558 * 196.27750 * 19 17 16 41 41 H 1.08992 * 110.36538 * 318.58930 * 19 17 16 42 42 H 1.09006 * 109.96331 * 239.03040 * 21 20 19 43 43 H 1.08995 * 109.99832 * 117.78663 * 21 20 19 44 44 H 1.09003 * 109.03638 * 304.51996 * 24 14 13 45 45 H 1.08999 * 109.03888 * 63.44962 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9450 -2.0003 -3.9034 10 1 2.0865 -3.2111 -3.9495 11 1 3.7374 -1.9075 -5.1560 12 1 3.8650 -2.0898 -2.7412 13 6 2.0400 -0.7213 1.2492 14 7 1.6574 0.0410 2.4453 15 6 2.6286 -0.1610 3.5324 16 6 2.3045 0.8173 4.6589 17 6 0.9026 0.5565 5.2149 18 1 0.8642 -0.3221 5.8589 19 6 0.4571 1.8707 5.9229 20 8 0.0750 2.7546 4.8519 21 6 -0.3177 1.9857 3.7043 22 6 -0.1318 0.5073 4.0717 23 1 -1.0746 0.1191 4.4570 24 6 0.3153 -0.3353 2.9013 25 1 -0.3634 0.6914 0.7603 26 1 -0.3633 0.3127 -0.9790 27 1 -0.3633 -1.0041 0.2186 28 1 3.1272 1.4435 0.0774 29 1 1.7413 1.9335 -0.9262 30 1 1.6147 1.9782 0.8486 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 1.6672 -0.1928 -5.6868 34 1 3.1259 -0.8040 1.2030 35 1 1.6013 -1.7179 1.2979 36 1 2.5559 -1.1835 3.9031 37 1 3.6366 0.0269 3.1628 38 1 3.0357 0.6991 5.4586 39 1 2.3540 1.8362 4.2749 40 1 -0.3907 1.6786 6.5805 41 1 1.2864 2.2976 6.4868 42 1 0.3132 2.2397 2.8525 43 1 -1.3629 2.1810 3.4647 44 1 -0.3890 -0.2047 2.0797 45 1 0.3222 -1.3835 3.2000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597230466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:43 Heat of formation + Delta-G solvation = -68.911082 kcal Electronic energy + Delta-G solvation = -22094.801879 eV Core-core repulsion = 19110.943085 eV Total energy + Delta-G solvation = -2983.858794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50356 -39.29574 -37.02294 -34.54419 -33.25671 -32.66661 -29.82512 -28.97622 -28.14992 -27.21605 -25.20091 -24.13692 -23.12981 -22.59421 -20.02386 -19.42816 -18.84600 -17.45188 -16.81947 -16.54544 -16.35883 -16.13282 -15.73118 -15.38783 -14.92402 -14.68741 -14.32527 -14.17037 -13.99483 -13.92032 -13.48125 -13.31236 -13.11643 -12.89634 -12.72840 -12.40930 -12.32324 -12.16532 -12.09678 -11.95302 -11.72104 -11.67928 -11.42774 -11.27584 -11.09041 -10.86936 -10.68447 -10.61776 -10.34914 -9.10836 -8.20089 -6.20087 1.36134 1.38301 1.49218 2.40663 2.94790 3.08987 3.15005 3.44704 3.73534 3.94785 4.06135 4.17819 4.21130 4.34831 4.38337 4.40401 4.48722 4.53952 4.62351 4.67336 4.78149 4.83491 4.88096 4.88955 4.91428 4.96416 4.97831 5.02630 5.07862 5.11491 5.17445 5.23532 5.27395 5.41827 5.47840 5.49011 5.58132 5.66934 5.78983 5.86377 6.10291 6.22696 6.29368 6.45210 6.87260 7.42102 8.96264 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037054 B = 0.004616 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.466884 B = 6064.918901 C = 6373.293221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.042 4.042 3 C -0.103 4.103 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.043 0.957 7 C 0.001 3.999 8 N -0.956 5.956 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.249 1.249 13 C 0.074 3.926 14 N -0.530 5.530 15 C 0.051 3.949 16 C -0.105 4.105 17 C -0.112 4.112 18 H 0.115 0.885 19 C 0.050 3.950 20 O -0.410 6.410 21 C 0.059 3.941 22 C -0.108 4.108 23 H 0.092 0.908 24 C 0.048 3.952 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -2.630 24.041 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 C -0.161 4.161 4 C -0.040 4.040 5 C -0.540 4.540 6 H 0.061 0.939 7 C -0.195 4.195 8 N -0.598 5.598 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.173 1.173 13 C -0.054 4.054 14 N -0.254 5.254 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.130 4.130 18 H 0.133 0.867 19 C -0.026 4.026 20 O -0.330 6.330 21 C -0.017 4.017 22 C -0.127 4.127 23 H 0.111 0.889 24 C -0.079 4.079 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.179 -1.902 23.757 23.834 hybrid contribution 0.291 -1.445 -0.902 1.728 sum 0.112 -3.347 22.855 23.099 Atomic orbital electron populations 1.21900 0.95336 1.00393 1.00530 1.20291 0.95447 0.95700 0.92822 1.21458 0.99229 0.95787 0.99600 1.19585 0.95650 0.95314 0.93496 1.21431 1.29978 1.12058 0.90526 0.93868 1.25921 0.97601 1.00228 0.95740 1.70068 1.48358 1.42914 0.98441 0.85795 0.79716 0.80014 0.77903 1.19564 1.21584 1.17251 1.22116 0.99736 0.94170 0.89411 1.62257 1.02332 1.56266 1.04519 1.22200 0.95850 0.97915 0.91654 1.21502 0.96006 0.99505 0.97236 1.22876 0.95024 0.98846 0.96260 0.86714 1.23779 0.99875 0.89341 0.89585 1.88504 1.87192 1.33303 1.23966 1.22998 0.99542 0.90228 0.88933 1.21919 0.99816 0.95383 0.95615 0.88944 1.21898 0.91731 0.96656 0.97632 0.91639 0.94823 0.93355 0.94505 0.95662 0.92030 0.96951 0.97040 0.92945 0.91502 0.94335 0.94145 0.90922 0.89775 0.92439 0.91287 0.88944 0.91611 0.91641 0.89448 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 6.86 71.98 0.49 -4.02 16 2 C -0.04 -1.57 0.61 -52.18 -0.03 -1.60 16 3 C -0.10 -3.99 7.98 71.98 0.57 -3.41 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -28.31 7.98 25.60 0.20 -28.11 16 6 H 0.04 2.69 6.02 -2.91 -0.02 2.67 16 7 C 0.00 0.04 5.47 84.66 0.46 0.50 16 8 N -0.96 -60.47 13.96 21.45 0.30 -60.17 16 9 Si 0.94 44.74 27.47 68.60 1.88 46.62 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 C 0.07 2.18 4.22 86.30 0.36 2.55 16 14 N -0.53 -13.14 3.27 -900.79 -2.95 -16.09 16 15 C 0.05 1.04 5.41 86.14 0.47 1.51 16 16 C -0.10 -1.84 5.03 30.50 0.15 -1.69 16 17 C -0.11 -1.74 3.82 -9.39 -0.04 -1.78 16 18 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 19 C 0.05 0.84 7.00 72.94 0.51 1.35 16 20 O -0.41 -10.05 11.01 -148.98 -1.64 -11.69 16 21 C 0.06 1.37 6.89 72.14 0.50 1.87 16 22 C -0.11 -2.03 2.85 -10.87 -0.03 -2.06 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 C 0.05 1.06 4.26 85.69 0.36 1.43 16 25 H 0.06 2.08 6.17 -2.39 -0.01 2.06 16 26 H 0.03 1.45 6.31 -2.39 -0.02 1.44 16 27 H 0.05 1.59 7.76 -2.39 -0.02 1.57 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.02 1.12 6.49 -2.39 -0.02 1.10 16 30 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 31 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 32 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 33 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.07 1.96 7.60 -2.39 -0.02 1.95 16 35 H 0.04 1.10 7.75 -2.39 -0.02 1.09 16 36 H 0.04 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.29 7.26 -2.38 -0.02 1.27 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 42 H 0.07 1.81 7.63 -2.38 -0.02 1.79 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 2.12 4.13 -2.39 -0.01 2.11 16 45 H 0.04 0.80 8.07 -2.39 -0.02 0.78 16 Total: -1.00 -65.44 326.53 2.57 -62.87 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.88 Total: 11.94 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 4.09 Total: -33.49 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -2.65 Total: -76.26 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.64 Total: -11.69 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -65.44 2.57 -62.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597230466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.038 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds