Wall clock time and date at job start Mon Mar 30 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 C 1.52995 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.49481 * 299.99611 * 4 3 2 6 6 C 1.53034 * 109.50170 * 60.06160 * 4 3 2 7 7 C 1.53034 * 109.54375 * 181.28706 * 6 4 3 8 8 C 1.53195 * 109.33539 * 298.68322 * 7 6 4 9 9 N 1.46924 * 108.77704 * 54.62192 * 8 7 6 10 10 C 1.34774 * 120.63414 * 126.36981 * 9 8 7 11 11 O 1.21279 * 120.00130 * 175.30407 * 10 9 8 12 12 C 1.50704 * 119.99836 * 355.30293 * 10 9 8 13 13 H 1.08999 * 109.46845 * 35.25881 * 12 10 9 14 14 C 1.52998 * 109.47021 * 275.25280 * 12 10 9 15 15 C 1.50702 * 109.46829 * 155.25573 * 12 10 9 16 16 H 1.07997 * 120.00042 * 0.02562 * 15 12 10 17 17 C 1.37871 * 119.99826 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00142 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00153 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47203 * 89.99792 * 19 17 15 21 21 H 1.48505 * 109.46959 * 210.00020 * 19 17 15 22 22 H 1.48502 * 109.46893 * 329.99896 * 19 17 15 23 23 C 1.46932 * 118.73387 * 306.38519 * 9 8 7 24 24 H 1.08994 * 109.47174 * 60.00567 * 1 2 3 25 25 H 1.09005 * 109.46417 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47054 * 299.99865 * 1 2 3 27 27 H 1.09004 * 109.47175 * 119.99429 * 2 1 3 28 28 H 1.08989 * 109.47756 * 239.99966 * 2 1 3 29 29 H 1.09004 * 109.46975 * 300.00195 * 3 2 1 30 30 H 1.08999 * 109.47005 * 59.99288 * 3 2 1 31 31 H 1.08992 * 109.46842 * 60.00106 * 5 4 3 32 32 H 1.09005 * 109.46931 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47308 * 300.00149 * 5 4 3 34 34 H 1.09004 * 109.46082 * 301.34162 * 6 4 3 35 35 H 1.09004 * 109.46142 * 61.29172 * 6 4 3 36 36 H 1.08997 * 109.49868 * 178.71654 * 7 6 4 37 37 H 1.09000 * 109.49783 * 58.65002 * 7 6 4 38 38 H 1.08995 * 109.58782 * 294.82539 * 8 7 6 39 39 H 1.09005 * 109.70243 * 174.47435 * 8 7 6 40 40 H 1.08998 * 109.47255 * 304.89807 * 14 12 10 41 41 H 1.09002 * 109.47055 * 64.89646 * 14 12 10 42 42 H 1.08991 * 109.47033 * 184.89002 * 14 12 10 43 43 H 0.96999 * 120.00360 * 179.97438 * 18 17 15 44 44 H 1.08991 * 109.59089 * 293.82253 * 23 9 8 45 45 H 1.08999 * 109.58164 * 173.39763 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0811 0.7214 1.2482 6 6 4.0804 0.7230 -1.2510 7 6 5.6104 0.6944 -1.2366 8 6 6.1447 2.1301 -1.2523 9 7 5.5444 2.8703 -0.1340 10 6 6.3213 3.5215 0.7541 11 8 5.8129 4.1987 1.6224 12 6 7.8216 3.4082 0.6684 13 1 8.1222 3.3482 -0.3776 14 6 8.2807 2.1478 1.4042 15 6 8.4539 4.6195 1.3040 16 1 7.8317 5.3936 1.7281 17 6 9.8268 4.7393 1.3442 18 7 10.5846 3.7963 0.8282 19 14 10.6107 6.2403 2.1327 20 1 10.8399 5.9783 3.5763 21 1 11.9082 6.5271 1.4696 22 1 9.7073 7.4088 1.9790 23 6 4.0811 2.8868 -0.0023 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 3.7181 -0.3062 1.2483 32 1 5.1712 0.7214 1.2471 33 1 3.7184 1.2351 2.1385 34 1 3.6977 -0.2976 -1.2642 35 1 3.7358 1.2511 -2.1401 36 1 5.9726 0.1618 -2.1159 37 1 5.9563 0.1873 -0.3359 38 1 5.8766 2.6094 -2.1937 39 1 7.2292 2.1198 -1.1434 40 1 7.9056 2.1675 2.4274 41 1 7.8936 1.2668 0.8922 42 1 9.3699 2.1112 1.4172 43 1 11.5505 3.8808 0.8561 44 1 3.6447 3.4279 -0.8418 45 1 3.8040 3.3736 0.9327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597318287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:41 Heat of formation + Delta-G solvation = -65.050179 kcal Electronic energy + Delta-G solvation = -21936.810743 eV Core-core repulsion = 18953.119370 eV Total energy + Delta-G solvation = -2983.691373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05885 -37.81159 -35.07647 -33.77155 -32.27413 -31.42677 -30.29363 -27.02847 -26.38669 -25.27899 -25.13731 -22.54848 -22.00572 -21.15869 -18.59209 -17.95038 -16.45914 -16.01125 -15.36375 -15.14619 -14.82473 -14.43932 -14.34667 -13.94333 -13.79629 -13.35711 -12.89777 -12.84975 -12.61171 -12.27167 -12.04615 -11.73699 -11.67775 -11.44223 -11.35062 -11.09667 -11.07239 -10.94827 -10.63778 -10.62035 -10.51012 -10.43010 -10.25576 -10.13683 -10.07020 -9.95948 -8.94671 -8.53941 -8.23547 -7.93669 -6.01669 -4.04935 3.34723 3.40265 3.46375 3.72237 3.78532 4.48096 4.66938 4.74394 4.83609 5.00092 5.11255 5.19976 5.30812 5.31211 5.42211 5.52894 5.59801 5.67488 5.68707 5.78567 5.79477 5.85050 5.91622 6.01299 6.03361 6.07196 6.14435 6.17308 6.21820 6.25285 6.27785 6.38888 6.51171 6.63692 6.68832 6.89872 7.01805 7.20670 7.47267 7.79638 8.01717 8.16728 8.43914 9.01331 9.29238 9.60010 11.05431 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038867 B = 0.004554 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.230656 B = 6147.600001 C = 6440.653188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.074 4.074 5 C -0.140 4.140 6 C -0.106 4.106 7 C -0.138 4.138 8 C 0.107 3.893 9 N -0.623 5.623 10 C 0.524 3.476 11 O -0.549 6.549 12 C 0.030 3.970 13 H 0.048 0.952 14 C -0.129 4.129 15 C -0.498 4.498 16 H 0.069 0.931 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.122 3.878 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.029 0.971 41 H 0.013 0.987 42 H 0.095 0.905 43 H 0.261 0.739 44 H 0.054 0.946 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 -9.725 -5.733 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.197 4.197 6 C -0.144 4.144 7 C -0.176 4.176 8 C -0.016 4.016 9 N -0.358 5.358 10 C 0.316 3.684 11 O -0.426 6.426 12 C 0.010 3.990 13 H 0.065 0.935 14 C -0.187 4.187 15 C -0.537 4.537 16 H 0.087 0.913 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.368 -9.366 -5.273 17.944 hybrid contribution 0.427 0.690 0.292 0.863 sum -13.941 -8.676 -4.981 17.159 Atomic orbital electron populations 1.21783 0.96288 1.01245 1.01654 1.21632 0.95276 0.97218 1.02245 1.21587 0.94145 0.96756 1.01965 1.20903 0.94564 0.96006 0.96011 1.21898 1.01995 0.99270 0.96518 1.21604 0.95590 1.00155 0.97047 1.21992 0.95737 0.97372 1.02493 1.21718 0.99969 0.90835 0.89086 1.48280 1.05469 1.53239 1.28836 1.21973 0.91219 0.76264 0.78944 1.90513 1.76080 1.39881 1.36085 1.18887 0.84695 0.96904 0.98563 0.93472 1.21692 1.05058 0.94118 0.97851 1.21107 0.91309 1.04028 1.37232 0.91314 1.24930 0.97112 0.96658 0.95478 1.69860 1.04682 1.33087 1.45918 0.86466 0.78376 0.83094 0.79371 1.20630 1.21283 1.19812 1.21456 0.81547 0.94837 1.02342 0.92938 0.93076 0.92882 0.91724 0.91819 0.92070 0.91885 0.92908 0.91858 0.92976 0.91855 0.92206 0.91306 0.91055 0.92507 0.88372 0.95175 0.96821 0.88679 0.92955 0.92813 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.14 5.23 -26.73 -0.14 -1.28 16 3 C -0.11 -1.10 4.27 -26.73 -0.11 -1.22 16 4 C -0.07 -0.92 0.55 -154.39 -0.08 -1.00 16 5 C -0.14 -1.88 7.63 37.16 0.28 -1.60 16 6 C -0.11 -1.19 4.40 -26.70 -0.12 -1.30 16 7 C -0.14 -1.72 5.74 -26.61 -0.15 -1.87 16 8 C 0.11 1.66 6.27 -3.71 -0.02 1.63 16 9 N -0.62 -11.47 2.41 -172.77 -0.42 -11.88 16 10 C 0.52 12.33 6.80 -10.98 -0.07 12.26 16 11 O -0.55 -14.71 15.24 5.56 0.08 -14.63 16 12 C 0.03 0.77 1.80 -92.92 -0.17 0.60 16 13 H 0.05 1.20 6.28 -51.93 -0.33 0.87 16 14 C -0.13 -3.08 8.92 37.16 0.33 -2.75 16 15 C -0.50 -14.32 8.33 -34.44 -0.29 -14.60 16 16 H 0.07 2.09 7.02 -52.49 -0.37 1.72 16 17 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 18 N -0.90 -25.17 11.29 55.43 0.63 -24.54 16 19 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.12 1.91 5.10 -3.71 -0.02 1.90 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 28 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 6.43 -51.93 -0.33 0.27 16 32 H 0.06 0.99 5.97 -51.93 -0.31 0.68 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.68 5.15 -51.93 -0.27 1.41 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.01 0.27 7.86 -51.93 -0.41 -0.14 16 42 H 0.09 2.47 5.96 -51.93 -0.31 2.16 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.53 7.03 -51.93 -0.37 1.17 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -30.52 335.17 -7.77 -38.28 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.80 Total: -0.68 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.29 Total: -8.53 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.21 Total: -36.43 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.52 -7.77 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597318287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.765 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds