Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 C 1.52995 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.49481 * 299.99611 * 4 3 2 6 6 C 1.53034 * 109.50170 * 60.06160 * 4 3 2 7 7 C 1.53034 * 109.54375 * 181.28706 * 6 4 3 8 8 C 1.53195 * 109.33539 * 298.68322 * 7 6 4 9 9 N 1.46924 * 108.77704 * 54.62192 * 8 7 6 10 10 C 1.34774 * 120.63414 * 126.36981 * 9 8 7 11 11 O 1.21279 * 120.00130 * 175.30407 * 10 9 8 12 12 C 1.50704 * 119.99836 * 355.30293 * 10 9 8 13 13 H 1.08999 * 109.46845 * 35.25881 * 12 10 9 14 14 C 1.52998 * 109.47021 * 275.25280 * 12 10 9 15 15 C 1.50702 * 109.46829 * 155.25573 * 12 10 9 16 16 H 1.07997 * 120.00042 * 0.02562 * 15 12 10 17 17 C 1.37871 * 119.99826 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00142 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00153 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47203 * 89.99792 * 19 17 15 21 21 H 1.48505 * 109.46959 * 210.00020 * 19 17 15 22 22 H 1.48502 * 109.46893 * 329.99896 * 19 17 15 23 23 C 1.46932 * 118.73387 * 306.38519 * 9 8 7 24 24 H 1.08994 * 109.47174 * 60.00567 * 1 2 3 25 25 H 1.09005 * 109.46417 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47054 * 299.99865 * 1 2 3 27 27 H 1.09004 * 109.47175 * 119.99429 * 2 1 3 28 28 H 1.08989 * 109.47756 * 239.99966 * 2 1 3 29 29 H 1.09004 * 109.46975 * 300.00195 * 3 2 1 30 30 H 1.08999 * 109.47005 * 59.99288 * 3 2 1 31 31 H 1.08992 * 109.46842 * 60.00106 * 5 4 3 32 32 H 1.09005 * 109.46931 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47308 * 300.00149 * 5 4 3 34 34 H 1.09004 * 109.46082 * 301.34162 * 6 4 3 35 35 H 1.09004 * 109.46142 * 61.29172 * 6 4 3 36 36 H 1.08997 * 109.49868 * 178.71654 * 7 6 4 37 37 H 1.09000 * 109.49783 * 58.65002 * 7 6 4 38 38 H 1.08995 * 109.58782 * 294.82539 * 8 7 6 39 39 H 1.09005 * 109.70243 * 174.47435 * 8 7 6 40 40 H 1.08998 * 109.47255 * 304.89807 * 14 12 10 41 41 H 1.09002 * 109.47055 * 64.89646 * 14 12 10 42 42 H 1.08991 * 109.47033 * 184.89002 * 14 12 10 43 43 H 0.96999 * 120.00360 * 179.97438 * 18 17 15 44 44 H 1.08991 * 109.59089 * 293.82253 * 23 9 8 45 45 H 1.08999 * 109.58164 * 173.39763 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0811 0.7214 1.2482 6 6 4.0804 0.7230 -1.2510 7 6 5.6104 0.6944 -1.2366 8 6 6.1447 2.1301 -1.2523 9 7 5.5444 2.8703 -0.1340 10 6 6.3213 3.5215 0.7541 11 8 5.8129 4.1987 1.6224 12 6 7.8216 3.4082 0.6684 13 1 8.1222 3.3482 -0.3776 14 6 8.2807 2.1478 1.4042 15 6 8.4539 4.6195 1.3040 16 1 7.8317 5.3936 1.7281 17 6 9.8268 4.7393 1.3442 18 7 10.5846 3.7963 0.8282 19 14 10.6107 6.2403 2.1327 20 1 10.8399 5.9783 3.5763 21 1 11.9082 6.5271 1.4696 22 1 9.7073 7.4088 1.9790 23 6 4.0811 2.8868 -0.0023 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8899 31 1 3.7181 -0.3062 1.2483 32 1 5.1712 0.7214 1.2471 33 1 3.7184 1.2351 2.1385 34 1 3.6977 -0.2976 -1.2642 35 1 3.7358 1.2511 -2.1401 36 1 5.9726 0.1618 -2.1159 37 1 5.9563 0.1873 -0.3359 38 1 5.8766 2.6094 -2.1937 39 1 7.2292 2.1198 -1.1434 40 1 7.9056 2.1675 2.4274 41 1 7.8936 1.2668 0.8922 42 1 9.3699 2.1112 1.4172 43 1 11.5505 3.8808 0.8561 44 1 3.6447 3.4279 -0.8418 45 1 3.8040 3.3736 0.9327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597318287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = -81.468499 kcal Electronic energy + Delta-G solvation = -21937.522695 eV Core-core repulsion = 18953.119370 eV Total energy + Delta-G solvation = -2984.403324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44587 -39.30836 -36.30484 -35.79798 -33.44894 -32.68933 -32.11050 -28.16827 -27.34875 -27.27429 -26.58674 -24.07741 -23.18455 -22.26183 -20.03555 -19.16316 -18.43888 -17.78245 -16.96816 -16.26831 -16.11323 -16.09787 -15.41052 -15.27179 -14.89757 -14.75429 -14.56312 -14.04840 -13.89917 -13.68104 -13.39036 -13.01735 -12.93666 -12.77961 -12.63583 -12.60051 -12.53716 -12.39670 -12.27631 -12.09031 -12.02533 -11.98445 -11.46083 -11.31356 -11.21100 -11.04859 -11.02607 -10.59944 -10.18012 -9.42409 -8.16725 -6.27657 1.38861 1.40006 1.51252 1.92449 2.22852 2.45953 3.12045 3.65702 3.78661 3.86672 4.10778 4.15468 4.25925 4.30705 4.33775 4.45336 4.57908 4.65943 4.67856 4.70498 4.80814 4.84701 4.90606 4.93406 4.95619 4.97609 5.02044 5.07930 5.08804 5.13723 5.19615 5.27370 5.32416 5.39548 5.43270 5.47367 5.58190 5.62137 5.68030 5.77587 5.95036 6.19645 6.62597 6.78935 7.37478 7.52004 8.88786 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038867 B = 0.004554 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.230656 B = 6147.600001 C = 6440.653188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.066 4.066 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.132 4.132 8 C 0.099 3.901 9 N -0.613 5.613 10 C 0.521 3.479 11 O -0.595 6.595 12 C 0.029 3.971 13 H 0.045 0.955 14 C -0.113 4.113 15 C -0.530 4.530 16 H 0.041 0.959 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.271 1.271 22 H -0.278 1.278 23 C 0.117 3.883 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.014 0.986 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.266 0.734 44 H 0.071 0.929 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -11.269 -7.463 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.140 4.140 4 C -0.067 4.067 5 C -0.194 4.194 6 C -0.139 4.139 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.346 5.346 10 C 0.312 3.688 11 O -0.476 6.476 12 C 0.008 3.992 13 H 0.062 0.938 14 C -0.172 4.172 15 C -0.569 4.569 16 H 0.059 0.941 17 C -0.177 4.177 18 N -0.547 5.547 19 Si 0.780 3.220 20 H -0.202 1.202 21 H -0.196 1.196 22 H -0.203 1.203 23 C -0.005 4.005 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.385 -10.955 -7.051 20.160 hybrid contribution 0.720 1.154 0.789 1.572 sum -14.666 -9.801 -6.262 18.718 Atomic orbital electron populations 1.21771 0.95512 1.01895 1.01727 1.21605 0.95947 0.95855 1.02568 1.21550 0.92199 0.98109 1.02101 1.20862 0.96038 0.93364 0.96431 1.21874 1.00277 1.00729 0.96505 1.21611 0.94316 1.01488 0.96435 1.21967 0.96825 0.94873 1.03284 1.21976 0.98919 0.92899 0.88526 1.48217 1.06540 1.51722 1.28083 1.21619 0.91008 0.76680 0.79511 1.90479 1.76580 1.42224 1.38305 1.18799 0.86222 0.96208 0.98006 0.93768 1.21480 1.03546 0.94954 0.97176 1.21238 0.91954 1.05038 1.38624 0.94106 1.25568 0.97242 0.99213 0.95699 1.69927 1.05055 1.33962 1.45782 0.85608 0.77842 0.79768 0.78750 1.20187 1.19564 1.20349 1.21684 0.79692 0.97587 1.01584 0.92401 0.92161 0.93348 0.92155 0.90650 0.90919 0.92900 0.90456 0.94377 0.94780 0.89447 0.90685 0.88426 0.92272 0.90375 0.90385 0.96710 0.93724 0.90651 0.92447 0.91040 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.80 5.23 30.60 0.16 -1.64 16 3 C -0.10 -1.86 4.27 30.59 0.13 -1.73 16 4 C -0.07 -1.51 0.55 -52.11 -0.03 -1.54 16 5 C -0.14 -3.57 7.63 71.98 0.55 -3.02 16 6 C -0.10 -1.86 4.40 30.62 0.13 -1.73 16 7 C -0.13 -2.89 5.74 30.67 0.18 -2.71 16 8 C 0.10 2.91 6.27 86.36 0.54 3.45 16 9 N -0.61 -22.59 2.41 -818.90 -1.97 -24.57 16 10 C 0.52 25.40 6.80 87.66 0.60 25.99 16 11 O -0.60 -33.61 15.24 -3.03 -0.05 -33.66 16 12 C 0.03 1.50 1.80 -12.28 -0.02 1.47 16 13 H 0.04 2.31 6.28 -2.39 -0.01 2.30 16 14 C -0.11 -5.53 8.92 71.98 0.64 -4.89 16 15 C -0.53 -31.59 8.33 25.60 0.21 -31.38 16 16 H 0.04 2.61 7.02 -2.91 -0.02 2.59 16 17 C 0.02 1.26 5.29 84.65 0.45 1.71 16 18 N -0.91 -51.31 11.29 21.45 0.24 -51.07 16 19 Si 0.95 45.52 29.54 68.60 2.03 47.54 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 23 C 0.12 3.63 5.10 86.36 0.44 4.07 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.95 6.43 -2.39 -0.02 0.94 16 28 H 0.07 0.96 6.40 -2.39 -0.02 0.95 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.61 6.43 -2.39 -0.02 1.60 16 32 H 0.04 1.18 5.97 -2.38 -0.01 1.17 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.28 6.36 -2.38 -0.02 1.27 16 35 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.47 6.34 -2.39 -0.02 1.46 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 2.63 5.15 -2.38 -0.01 2.62 16 40 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 42 H 0.07 3.98 5.96 -2.39 -0.01 3.97 16 43 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 2.11 7.03 -2.39 -0.02 2.09 16 Total: -1.00 -68.44 335.17 5.89 -62.54 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.95 Total: 12.44 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.70 Total: -13.23 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.73 Total: -75.64 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.05 Total: -33.66 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.44 5.89 -62.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597318287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.924 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds