Wall clock time and date at job start Mon Mar 30 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.53008 * 109.47148 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.49644 * 60.06669 * 4 3 2 6 6 C 1.53039 * 109.49603 * 300.00220 * 4 3 2 7 7 C 1.53039 * 109.53914 * 178.64778 * 6 4 3 8 8 C 1.53193 * 109.30882 * 61.36657 * 7 6 4 9 9 N 1.46928 * 108.77659 * 305.36216 * 8 7 6 10 10 C 1.34777 * 120.63311 * 233.58347 * 9 8 7 11 11 O 1.21280 * 119.99858 * 185.04373 * 10 9 8 12 12 C 1.50698 * 119.99999 * 5.05464 * 10 9 8 13 13 H 1.09005 * 109.46671 * 322.79407 * 12 10 9 14 14 C 1.52999 * 109.46846 * 202.79599 * 12 10 9 15 15 C 1.50697 * 109.47260 * 82.79210 * 12 10 9 16 16 H 1.08004 * 120.00095 * 0.02562 * 15 12 10 17 17 C 1.37878 * 120.00160 * 179.97438 * 15 12 10 18 18 N 1.31523 * 119.99553 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46936 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47068 * 119.99973 * 19 17 15 22 22 H 1.48499 * 109.47305 * 240.00142 * 19 17 15 23 23 C 1.46934 * 118.73550 * 53.86329 * 9 8 7 24 24 H 1.09004 * 109.47354 * 59.99702 * 1 2 3 25 25 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46676 * 299.99722 * 1 2 3 27 27 H 1.09003 * 109.47085 * 240.00525 * 2 1 3 28 28 H 1.08995 * 109.47302 * 120.00519 * 2 1 3 29 29 H 1.08998 * 109.47161 * 60.00575 * 3 2 1 30 30 H 1.08996 * 109.47796 * 299.99944 * 3 2 1 31 31 H 1.09002 * 109.46861 * 299.93522 * 5 4 3 32 32 H 1.08995 * 109.46941 * 59.93755 * 5 4 3 33 33 H 1.09000 * 109.46698 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.45874 * 58.62941 * 6 4 3 35 35 H 1.09001 * 109.44810 * 298.66433 * 6 4 3 36 36 H 1.08996 * 109.49752 * 301.41531 * 7 6 4 37 37 H 1.08996 * 109.52753 * 181.32898 * 7 6 4 38 38 H 1.08998 * 109.58451 * 185.58089 * 8 7 6 39 39 H 1.09001 * 109.59058 * 65.15174 * 8 7 6 40 40 H 1.09003 * 109.46787 * 293.92211 * 14 12 10 41 41 H 1.09000 * 109.47320 * 53.92258 * 14 12 10 42 42 H 1.09008 * 109.46841 * 173.92677 * 14 12 10 43 43 H 0.97002 * 119.99457 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.58533 * 65.92689 * 23 9 8 45 45 H 1.08997 * 109.58393 * 186.35192 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0802 0.7230 -1.2509 6 6 4.0813 0.7210 1.2484 7 6 5.6113 0.6909 1.2318 8 6 6.1464 2.1262 1.2495 9 7 5.5454 2.8688 0.1332 10 6 6.3216 3.5220 -0.7541 11 8 5.8128 4.2060 -1.6167 12 6 7.8217 3.4022 -0.6745 13 1 8.1286 3.3698 0.3709 14 6 8.4666 4.6095 -1.3582 15 6 8.2621 2.1382 -1.3668 16 1 7.5291 1.4869 -1.8195 17 6 9.6010 1.8136 -1.4231 18 7 10.4936 2.6070 -0.8722 19 14 10.1470 0.2472 -2.2818 20 1 8.9581 -0.4650 -2.8154 21 1 11.0620 0.5890 -3.4003 22 1 10.8549 -0.6275 -1.3128 23 6 4.0817 2.8910 0.0063 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.7180 -0.3051 -1.2516 32 1 3.7158 1.2373 -2.1401 33 1 5.1702 0.7237 -1.2511 34 1 3.6982 -0.2995 1.2607 35 1 3.7381 1.2485 2.1383 36 1 5.9555 0.1854 0.3296 37 1 5.9747 0.1564 2.1095 38 1 7.2306 2.1134 1.1380 39 1 5.8796 2.6041 2.1921 40 1 8.2480 4.5821 -2.4257 41 1 8.0657 5.5275 -0.9286 42 1 9.5458 4.5787 -1.2074 43 1 11.4355 2.3784 -0.9115 44 1 3.6499 3.4300 0.8496 45 1 3.8032 3.3828 -0.9257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597318290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:45 Heat of formation + Delta-G solvation = -67.851052 kcal Electronic energy + Delta-G solvation = -22145.552372 eV Core-core repulsion = 19161.739544 eV Total energy + Delta-G solvation = -2983.812828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94165 -37.78218 -34.99885 -33.79751 -32.16307 -31.30243 -30.25858 -26.95084 -26.37026 -25.29106 -25.01202 -22.50371 -21.89988 -21.02113 -18.38059 -17.88301 -16.43408 -16.26275 -15.32077 -15.12045 -14.76680 -14.38442 -14.27350 -13.86508 -13.70324 -13.27057 -12.89531 -12.70834 -12.57664 -12.02558 -11.91347 -11.67388 -11.53438 -11.50395 -11.29051 -11.02305 -11.00028 -10.94951 -10.79657 -10.44804 -10.37079 -10.34223 -10.24375 -10.11527 -9.95680 -9.88294 -8.99423 -8.58804 -8.30355 -7.86140 -6.10510 -4.17486 3.24676 3.33295 3.36851 3.73603 3.88821 4.39532 4.74986 4.84000 4.92603 5.08631 5.21623 5.22233 5.29984 5.44054 5.53613 5.60705 5.70675 5.76353 5.80694 5.85675 5.88940 5.95496 5.99785 6.09704 6.14000 6.18283 6.21655 6.31716 6.32297 6.37039 6.44242 6.56944 6.60324 6.83105 6.87900 7.03566 7.12875 7.34479 7.59577 7.77893 7.96554 8.19562 8.35381 8.82786 9.28404 9.48020 10.95982 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.005812 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.990396 B = 4816.457626 C = 5322.701164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.073 4.073 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.136 4.136 8 C 0.110 3.890 9 N -0.616 5.616 10 C 0.529 3.471 11 O -0.568 6.568 12 C 0.030 3.970 13 H 0.047 0.953 14 C -0.120 4.120 15 C -0.504 4.504 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.122 3.878 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.009 0.991 42 H 0.082 0.918 43 H 0.262 0.738 44 H 0.053 0.947 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 -5.305 6.001 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.199 4.199 6 C -0.144 4.144 7 C -0.175 4.175 8 C -0.013 4.013 9 N -0.349 5.349 10 C 0.322 3.678 11 O -0.447 6.447 12 C 0.009 3.991 13 H 0.064 0.936 14 C -0.178 4.178 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.028 0.972 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.623 -4.905 5.561 15.511 hybrid contribution 0.301 -0.910 -0.390 1.035 sum -13.322 -5.816 5.172 15.429 Atomic orbital electron populations 1.21783 0.96356 1.01205 1.01582 1.21633 0.95184 0.97282 1.02315 1.21584 0.94326 0.96700 1.01785 1.20972 0.94345 0.95915 0.96175 1.21914 1.02628 0.99083 0.96237 1.21618 0.95972 0.99999 0.96828 1.21954 0.95158 0.97564 1.02783 1.21715 1.00726 0.90668 0.88157 1.48109 1.05256 1.52642 1.28934 1.21929 0.91345 0.75910 0.78650 1.90513 1.76478 1.41140 1.36536 1.18932 0.84637 0.96972 0.98592 0.93571 1.21572 1.02767 0.94209 0.99240 1.20754 0.92280 1.04782 1.36446 0.92424 1.24896 0.96467 0.96948 0.95195 1.69915 1.01510 1.36680 1.44208 0.86472 0.78744 0.83049 0.79421 1.19732 1.20892 1.20890 1.21545 0.81603 0.94944 1.02074 0.92922 0.93103 0.92982 0.91695 0.91801 0.92178 0.91996 0.93030 0.93162 0.91218 0.91986 0.92428 0.90547 0.91525 0.87451 0.93098 0.94391 0.97192 0.89919 0.92802 0.92894 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.25 5.23 -26.73 -0.14 -1.39 16 3 C -0.11 -1.18 4.28 -26.73 -0.11 -1.30 16 4 C -0.07 -0.99 0.55 -154.16 -0.08 -1.07 16 5 C -0.14 -2.15 7.64 37.16 0.28 -1.87 16 6 C -0.11 -1.33 4.40 -26.69 -0.12 -1.45 16 7 C -0.14 -1.96 5.74 -26.61 -0.15 -2.11 16 8 C 0.11 1.85 6.26 -3.71 -0.02 1.82 16 9 N -0.62 -11.77 2.40 -172.50 -0.41 -12.18 16 10 C 0.53 12.46 6.76 -10.99 -0.07 12.39 16 11 O -0.57 -14.85 15.62 5.56 0.09 -14.76 16 12 C 0.03 0.74 1.80 -92.93 -0.17 0.57 16 13 H 0.05 1.16 6.38 -51.93 -0.33 0.83 16 14 C -0.12 -3.06 8.28 37.16 0.31 -2.76 16 15 C -0.50 -13.36 8.27 -34.44 -0.28 -13.64 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -24.15 11.39 55.43 0.63 -23.52 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.12 1.99 5.14 -3.48 -0.02 1.97 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 28 H 0.06 0.62 6.40 -51.93 -0.33 0.28 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 34 H 0.06 0.70 6.36 -51.92 -0.33 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 2.05 5.32 -51.93 -0.28 1.78 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 2.20 6.26 -51.92 -0.32 1.88 16 43 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.55 7.03 -51.93 -0.37 1.18 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -28.96 336.43 -7.84 -36.80 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.88 Total: 1.03 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.31 Total: -8.09 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.22 Total: -35.71 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.09 Total: -14.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.96 -7.84 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597318290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.051 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds