Wall clock time and date at job start Mon Mar 30 2020 06:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 C 1.53008 * 109.47148 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.49644 * 60.06669 * 4 3 2 6 6 C 1.53039 * 109.49603 * 300.00220 * 4 3 2 7 7 C 1.53039 * 109.53914 * 178.64778 * 6 4 3 8 8 C 1.53193 * 109.30882 * 61.36657 * 7 6 4 9 9 N 1.46928 * 108.77659 * 305.36216 * 8 7 6 10 10 C 1.34777 * 120.63311 * 233.58347 * 9 8 7 11 11 O 1.21280 * 119.99858 * 185.04373 * 10 9 8 12 12 C 1.50698 * 119.99999 * 5.05464 * 10 9 8 13 13 H 1.09005 * 109.46671 * 322.79407 * 12 10 9 14 14 C 1.52999 * 109.46846 * 202.79599 * 12 10 9 15 15 C 1.50697 * 109.47260 * 82.79210 * 12 10 9 16 16 H 1.08004 * 120.00095 * 0.02562 * 15 12 10 17 17 C 1.37878 * 120.00160 * 179.97438 * 15 12 10 18 18 N 1.31523 * 119.99553 * 0.02562 * 17 15 12 19 19 Si 1.86792 * 120.00373 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46936 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47068 * 119.99973 * 19 17 15 22 22 H 1.48499 * 109.47305 * 240.00142 * 19 17 15 23 23 C 1.46934 * 118.73550 * 53.86329 * 9 8 7 24 24 H 1.09004 * 109.47354 * 59.99702 * 1 2 3 25 25 H 1.09000 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46676 * 299.99722 * 1 2 3 27 27 H 1.09003 * 109.47085 * 240.00525 * 2 1 3 28 28 H 1.08995 * 109.47302 * 120.00519 * 2 1 3 29 29 H 1.08998 * 109.47161 * 60.00575 * 3 2 1 30 30 H 1.08996 * 109.47796 * 299.99944 * 3 2 1 31 31 H 1.09002 * 109.46861 * 299.93522 * 5 4 3 32 32 H 1.08995 * 109.46941 * 59.93755 * 5 4 3 33 33 H 1.09000 * 109.46698 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.45874 * 58.62941 * 6 4 3 35 35 H 1.09001 * 109.44810 * 298.66433 * 6 4 3 36 36 H 1.08996 * 109.49752 * 301.41531 * 7 6 4 37 37 H 1.08996 * 109.52753 * 181.32898 * 7 6 4 38 38 H 1.08998 * 109.58451 * 185.58089 * 8 7 6 39 39 H 1.09001 * 109.59058 * 65.15174 * 8 7 6 40 40 H 1.09003 * 109.46787 * 293.92211 * 14 12 10 41 41 H 1.09000 * 109.47320 * 53.92258 * 14 12 10 42 42 H 1.09008 * 109.46841 * 173.92677 * 14 12 10 43 43 H 0.97002 * 119.99457 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.58533 * 65.92689 * 23 9 8 45 45 H 1.08997 * 109.58393 * 186.35192 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0802 0.7230 -1.2509 6 6 4.0813 0.7210 1.2484 7 6 5.6113 0.6909 1.2318 8 6 6.1464 2.1262 1.2495 9 7 5.5454 2.8688 0.1332 10 6 6.3216 3.5220 -0.7541 11 8 5.8128 4.2060 -1.6167 12 6 7.8217 3.4022 -0.6745 13 1 8.1286 3.3698 0.3709 14 6 8.4666 4.6095 -1.3582 15 6 8.2621 2.1382 -1.3668 16 1 7.5291 1.4869 -1.8195 17 6 9.6010 1.8136 -1.4231 18 7 10.4936 2.6070 -0.8722 19 14 10.1470 0.2472 -2.2818 20 1 8.9581 -0.4650 -2.8154 21 1 11.0620 0.5890 -3.4003 22 1 10.8549 -0.6275 -1.3128 23 6 4.0817 2.8910 0.0063 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.7180 -0.3051 -1.2516 32 1 3.7158 1.2373 -2.1401 33 1 5.1702 0.7237 -1.2511 34 1 3.6982 -0.2995 1.2607 35 1 3.7381 1.2485 2.1383 36 1 5.9555 0.1854 0.3296 37 1 5.9747 0.1564 2.1095 38 1 7.2306 2.1134 1.1380 39 1 5.8796 2.6041 2.1921 40 1 8.2480 4.5821 -2.4257 41 1 8.0657 5.5275 -0.9286 42 1 9.5458 4.5787 -1.2074 43 1 11.4355 2.3784 -0.9115 44 1 3.6499 3.4300 0.8496 45 1 3.8032 3.3828 -0.9257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597318290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:44 Heat of formation + Delta-G solvation = -82.525027 kcal Electronic energy + Delta-G solvation = -22146.188683 eV Core-core repulsion = 19161.739544 eV Total energy + Delta-G solvation = -2984.449139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39661 -39.31444 -36.27577 -35.78447 -33.36564 -32.64481 -32.11974 -28.25565 -27.45582 -27.14910 -26.53867 -24.04496 -23.16664 -22.17660 -19.91113 -19.20328 -18.36916 -18.07871 -16.91284 -16.27656 -16.10861 -16.02280 -15.38963 -15.27864 -14.96989 -14.61773 -14.52000 -13.89581 -13.81182 -13.63953 -13.50419 -13.02856 -12.93387 -12.81970 -12.63534 -12.59895 -12.55207 -12.37053 -12.24826 -12.14285 -12.03289 -11.81500 -11.44734 -11.30576 -11.20286 -11.04560 -11.03379 -10.59930 -10.21528 -9.38790 -8.16218 -6.29683 1.39642 1.42884 1.53046 1.91517 2.32350 2.44819 3.13490 3.66530 3.80754 3.88191 4.13946 4.18098 4.30765 4.31650 4.34727 4.45448 4.61023 4.67374 4.70950 4.76051 4.81829 4.84955 4.92403 4.95234 4.96967 4.98158 5.05093 5.08363 5.14967 5.17670 5.21329 5.29680 5.33624 5.40460 5.47660 5.49848 5.58441 5.64125 5.64807 5.85419 5.87765 6.15182 6.62717 6.72868 7.35942 7.49842 8.90195 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.005812 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.990396 B = 4816.457626 C = 5322.701164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.066 4.066 5 C -0.137 4.137 6 C -0.100 4.100 7 C -0.132 4.132 8 C 0.105 3.895 9 N -0.608 5.608 10 C 0.524 3.476 11 O -0.605 6.605 12 C 0.028 3.972 13 H 0.044 0.956 14 C -0.110 4.110 15 C -0.514 4.514 16 H 0.043 0.957 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.955 3.045 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.117 3.883 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.070 0.930 43 H 0.266 0.734 44 H 0.078 0.922 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.160 -7.044 7.724 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.067 4.067 5 C -0.194 4.194 6 C -0.137 4.137 7 C -0.170 4.170 8 C -0.017 4.017 9 N -0.339 5.339 10 C 0.316 3.684 11 O -0.487 6.487 12 C 0.007 3.993 13 H 0.062 0.938 14 C -0.168 4.168 15 C -0.553 4.553 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.546 5.546 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.005 4.005 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.039 0.961 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.232 -6.672 7.326 18.172 hybrid contribution 0.791 -0.348 -0.903 1.250 sum -14.442 -7.019 6.423 17.294 Atomic orbital electron populations 1.21763 0.95300 1.01873 1.01832 1.21610 0.96100 0.96046 1.02381 1.21537 0.91974 0.97969 1.02262 1.20943 0.96133 0.93618 0.96025 1.21868 1.00210 1.00571 0.96787 1.21610 0.94105 1.01346 0.96645 1.21920 0.96836 0.95522 1.02738 1.21885 0.99148 0.92460 0.88206 1.48091 1.06471 1.51174 1.28198 1.21595 0.91124 0.76468 0.79239 1.90483 1.76865 1.43092 1.38275 1.18854 0.86200 0.96157 0.98073 0.93833 1.21436 1.02021 0.95270 0.98089 1.20798 0.92411 1.05231 1.36836 0.93824 1.25559 0.96343 0.99684 0.95643 1.69995 1.01831 1.37973 1.44787 0.85546 0.78105 0.79755 0.78512 1.19870 1.20836 1.19510 1.21790 0.79634 0.97290 1.01808 0.93257 0.92272 0.92200 0.92509 0.90809 0.90551 0.92762 0.90878 0.94730 0.94763 0.89873 0.90284 0.93099 0.88966 0.90381 0.90135 0.96322 0.96114 0.91137 0.92467 0.90395 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.05 5.23 30.59 0.16 -1.89 16 3 C -0.10 -1.94 4.28 30.60 0.13 -1.81 16 4 C -0.07 -1.67 0.55 -51.96 -0.03 -1.70 16 5 C -0.14 -4.14 7.64 71.98 0.55 -3.59 16 6 C -0.10 -2.13 4.40 30.62 0.13 -1.99 16 7 C -0.13 -3.53 5.74 30.67 0.18 -3.35 16 8 C 0.11 3.41 6.26 86.36 0.54 3.95 16 9 N -0.61 -23.26 2.40 -818.05 -1.96 -25.22 16 10 C 0.52 25.44 6.76 87.66 0.59 26.03 16 11 O -0.60 -32.84 15.62 -3.03 -0.05 -32.89 16 12 C 0.03 1.45 1.80 -12.29 -0.02 1.43 16 13 H 0.04 2.26 6.38 -2.38 -0.02 2.25 16 14 C -0.11 -5.83 8.28 71.98 0.60 -5.23 16 15 C -0.51 -28.07 8.27 25.60 0.21 -27.85 16 16 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 17 C 0.03 1.50 5.30 84.65 0.45 1.95 16 18 N -0.91 -50.08 11.39 21.45 0.24 -49.84 16 19 Si 0.96 42.72 29.54 68.60 2.03 44.74 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.12 3.72 5.14 86.50 0.44 4.17 16 24 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.04 6.43 -2.39 -0.02 1.02 16 28 H 0.07 1.10 6.40 -2.39 -0.02 1.08 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.84 6.44 -2.39 -0.02 1.83 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 1.27 5.97 -2.39 -0.01 1.25 16 34 H 0.08 1.50 6.36 -2.38 -0.02 1.48 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.64 6.33 -2.39 -0.02 1.62 16 37 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 3.02 5.32 -2.39 -0.01 3.01 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 3.87 6.26 -2.38 -0.01 3.85 16 43 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.06 2.19 7.03 -2.39 -0.02 2.18 16 Total: -1.00 -64.16 336.43 5.85 -58.31 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.94 Total: 16.20 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.65 Total: -11.30 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.72 Total: -75.06 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -64.16 5.85 -58.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597318290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.216 kcal (2) G-P(sol) polarization free energy of solvation -64.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds