Wall clock time and date at job start Mon Mar 30 2020 07:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46765 * 2 1 4 4 C 1.52995 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47348 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47656 * 305.00213 * 5 4 3 7 7 N 1.46505 * 109.46967 * 64.99835 * 5 4 3 8 8 C 1.34771 * 120.00023 * 204.99658 * 7 5 4 9 9 O 1.21288 * 120.00355 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00057 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47054 * 60.00402 * 10 8 7 12 12 C 1.52996 * 109.47231 * 300.00486 * 10 8 7 13 13 C 1.50699 * 109.47305 * 180.02562 * 10 8 7 14 14 H 1.07997 * 119.99950 * 0.02562 * 13 10 8 15 15 C 1.37877 * 119.99997 * 180.02562 * 13 10 8 16 16 N 1.31508 * 120.00265 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99889 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47098 * 120.00030 * 17 15 13 20 20 H 1.48497 * 109.46896 * 240.00003 * 17 15 13 21 21 C 1.53002 * 109.47413 * 184.99832 * 5 4 3 22 22 C 1.53781 * 113.61609 * 180.02562 * 21 5 4 23 23 C 1.53781 * 87.08070 * 139.98229 * 22 21 5 24 24 C 1.53786 * 87.17350 * 334.52830 * 23 22 21 25 25 H 1.08999 * 109.46632 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47334 * 299.99792 * 1 2 3 27 27 H 1.08998 * 109.47549 * 60.00630 * 1 2 3 28 28 H 1.08992 * 109.47334 * 240.00208 * 2 1 3 29 29 H 1.08998 * 109.47128 * 119.99036 * 2 1 3 30 30 H 1.09000 * 109.47351 * 59.99437 * 3 2 1 31 31 H 1.09007 * 109.46804 * 299.99936 * 3 2 1 32 32 H 1.09004 * 109.47011 * 59.99379 * 4 3 2 33 33 H 1.08998 * 109.47297 * 299.99481 * 4 3 2 34 34 H 0.96997 * 119.99778 * 25.00516 * 7 5 4 35 35 H 1.09008 * 109.47572 * 299.99846 * 12 10 8 36 36 H 1.09006 * 109.47438 * 59.99619 * 12 10 8 37 37 H 1.08994 * 109.47489 * 179.97438 * 12 10 8 38 38 H 0.97000 * 120.00131 * 179.97438 * 16 15 13 39 39 H 1.08996 * 112.84723 * 48.80827 * 21 5 4 40 40 H 1.08999 * 113.61181 * 25.43284 * 22 21 5 41 41 H 1.08998 * 113.61680 * 254.52836 * 22 21 5 42 42 H 1.09002 * 113.61445 * 89.11830 * 23 22 21 43 43 H 1.09002 * 113.61408 * 219.93560 * 23 22 21 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 23 22 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8852 -0.0013 6 1 3.6449 3.4240 -0.8430 7 7 3.6927 3.5405 1.2505 8 6 3.5659 4.8814 1.2980 9 8 3.7718 5.5456 0.3043 10 6 3.1671 5.5555 2.5855 11 1 3.9057 5.3334 3.3557 12 6 1.7970 5.0387 3.0287 13 6 3.0963 7.0455 2.3715 14 1 3.3175 7.4626 1.4002 15 6 2.7491 7.8762 3.4157 16 7 2.4793 7.3683 4.5983 17 14 2.6620 9.7233 3.1505 18 1 3.0077 10.0379 1.7411 19 1 1.2860 10.2007 3.4406 20 1 3.6224 10.3996 4.0591 21 6 5.6046 2.8871 -0.1276 22 6 6.2202 4.2963 -0.1373 23 6 7.3439 3.7261 0.7442 24 6 6.3351 2.6629 1.2100 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8901 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9288 0.8891 34 1 3.5278 3.0093 2.0452 35 1 1.0583 5.2607 2.2584 36 1 1.8478 3.9608 3.1834 37 1 1.5087 5.5258 3.9601 38 1 2.2354 7.9528 5.3330 39 1 5.9632 2.2481 -0.9345 40 1 5.6072 5.0440 0.3659 41 1 6.5587 4.6182 -1.1222 42 1 8.1791 3.3163 0.1762 43 1 7.6627 4.4026 1.5371 44 1 6.7661 1.6670 1.3122 45 1 5.7535 2.9649 2.0810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597372765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:56 Heat of formation + Delta-G solvation = -48.130835 kcal Electronic energy + Delta-G solvation = -21635.198906 eV Core-core repulsion = 18652.241211 eV Total energy + Delta-G solvation = -2982.957695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96945 -37.51283 -36.03431 -33.69714 -33.58202 -31.06829 -29.81875 -27.19644 -25.26066 -25.09765 -23.75910 -22.74157 -21.15467 -20.60810 -19.46499 -18.71392 -16.30906 -15.93617 -15.79442 -15.55239 -15.08564 -14.61682 -14.29509 -13.74316 -13.37601 -13.27515 -13.06712 -12.71371 -12.45179 -12.25993 -12.01798 -11.80308 -11.50203 -11.35533 -11.13388 -11.09150 -11.00029 -10.77162 -10.68278 -10.59955 -10.52347 -10.25766 -10.15702 -9.92021 -9.84226 -9.69003 -8.92753 -8.55893 -8.29681 -8.17710 -6.00553 -4.03188 3.33769 3.41426 3.49761 3.77828 4.01567 4.50387 4.62030 4.93255 4.97189 4.99313 5.08103 5.15027 5.23792 5.32956 5.34545 5.47049 5.52963 5.72226 5.78703 5.82957 5.87835 5.94244 5.96074 6.03295 6.07315 6.16008 6.22580 6.25585 6.26834 6.40554 6.44193 6.48048 6.65326 6.66969 6.85654 6.96340 7.03249 7.25284 7.51624 7.79007 8.03213 8.20574 8.52369 9.06553 9.32472 9.62663 11.07078 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005929 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.627938 B = 4721.347801 C = 5967.072360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.122 4.122 5 C 0.153 3.847 6 H 0.082 0.918 7 N -0.735 5.735 8 C 0.521 3.479 9 O -0.540 6.540 10 C 0.028 3.972 11 H 0.050 0.950 12 C -0.131 4.131 13 C -0.497 4.497 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.123 4.123 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.131 4.131 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.011 0.989 37 H 0.092 0.908 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -14.901 -6.274 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.160 4.160 5 C 0.048 3.952 6 H 0.100 0.900 7 N -0.389 5.389 8 C 0.311 3.689 9 O -0.417 6.417 10 C 0.007 3.993 11 H 0.067 0.933 12 C -0.189 4.189 13 C -0.536 4.536 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.143 4.143 22 C -0.183 4.183 23 C -0.184 4.184 24 C -0.169 4.169 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.049 0.951 36 H 0.030 0.970 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.222 -14.337 -6.832 16.036 hybrid contribution -0.074 0.623 0.302 0.696 sum 2.147 -13.714 -6.530 15.341 Atomic orbital electron populations 1.21778 0.96078 1.01185 1.02043 1.21525 0.95764 0.97170 1.01565 1.21634 0.95134 0.96277 1.02849 1.21824 0.95737 0.96071 1.02327 1.20713 0.93242 0.92325 0.88963 0.89966 1.46324 1.72319 1.07965 1.12263 1.21855 0.74036 0.80593 0.92403 1.90491 1.49439 1.64169 1.37614 1.18867 0.95258 0.96062 0.89128 0.93258 1.21729 0.97698 0.95952 1.03547 1.21189 1.45401 0.89507 0.97476 0.90736 1.24945 0.95299 0.98985 0.95054 1.69879 1.47759 1.34828 1.01220 0.86438 0.77454 0.85198 0.78406 1.19576 1.21123 1.21111 1.23020 0.94909 0.98466 0.97868 1.23366 0.97492 0.97450 0.99998 1.22804 0.96796 0.98823 1.00013 1.22909 0.97896 0.98148 0.97901 0.93133 0.92568 0.92840 0.92428 0.92218 0.91324 0.92076 0.91260 0.91659 0.77265 0.95084 0.97015 0.88987 0.93104 0.89753 0.86636 0.92786 0.91292 0.91847 0.92532 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.37 5.10 -26.73 -0.14 -1.51 16 4 C -0.12 -1.34 4.75 -26.74 -0.13 -1.47 16 5 C 0.15 2.20 2.19 -67.93 -0.15 2.05 16 6 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 7 N -0.74 -12.11 2.94 -53.80 -0.16 -12.27 16 8 C 0.52 11.30 5.94 -10.99 -0.07 11.24 16 9 O -0.54 -13.34 12.63 5.55 0.07 -13.27 16 10 C 0.03 0.68 2.64 -92.93 -0.25 0.44 16 11 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 12 C -0.13 -2.98 8.86 37.16 0.33 -2.65 16 13 C -0.50 -13.96 8.37 -34.44 -0.29 -14.25 16 14 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -25.16 11.32 55.43 0.63 -24.53 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.12 -1.71 3.58 -89.67 -0.32 -2.03 16 22 C -0.15 -2.43 7.22 -25.92 -0.19 -2.62 16 23 C -0.15 -2.10 8.07 -25.92 -0.21 -2.31 16 24 C -0.13 -1.76 7.49 -25.77 -0.19 -1.95 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.39 5.80 7.86 -40.82 -0.32 5.48 16 35 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 37 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 2.39 4.12 -51.93 -0.21 2.17 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.25 6.77 -51.93 -0.35 0.90 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -29.30 348.04 -8.94 -38.24 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.22 Total: 5.73 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.48 Total: -15.97 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.47 Total: -36.80 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.30 -8.94 -38.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.896 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds