Wall clock time and date at job start Mon Mar 30 2020 07:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46765 * 2 1 4 4 C 1.52995 * 109.47199 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47348 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47656 * 305.00213 * 5 4 3 7 7 N 1.46505 * 109.46967 * 64.99835 * 5 4 3 8 8 C 1.34771 * 120.00023 * 204.99658 * 7 5 4 9 9 O 1.21288 * 120.00355 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00057 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.47054 * 60.00402 * 10 8 7 12 12 C 1.52996 * 109.47231 * 300.00486 * 10 8 7 13 13 C 1.50699 * 109.47305 * 180.02562 * 10 8 7 14 14 H 1.07997 * 119.99950 * 0.02562 * 13 10 8 15 15 C 1.37877 * 119.99997 * 180.02562 * 13 10 8 16 16 N 1.31508 * 120.00265 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99889 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47098 * 120.00030 * 17 15 13 20 20 H 1.48497 * 109.46896 * 240.00003 * 17 15 13 21 21 C 1.53002 * 109.47413 * 184.99832 * 5 4 3 22 22 C 1.53781 * 113.61609 * 180.02562 * 21 5 4 23 23 C 1.53781 * 87.08070 * 139.98229 * 22 21 5 24 24 C 1.53786 * 87.17350 * 334.52830 * 23 22 21 25 25 H 1.08999 * 109.46632 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47334 * 299.99792 * 1 2 3 27 27 H 1.08998 * 109.47549 * 60.00630 * 1 2 3 28 28 H 1.08992 * 109.47334 * 240.00208 * 2 1 3 29 29 H 1.08998 * 109.47128 * 119.99036 * 2 1 3 30 30 H 1.09000 * 109.47351 * 59.99437 * 3 2 1 31 31 H 1.09007 * 109.46804 * 299.99936 * 3 2 1 32 32 H 1.09004 * 109.47011 * 59.99379 * 4 3 2 33 33 H 1.08998 * 109.47297 * 299.99481 * 4 3 2 34 34 H 0.96997 * 119.99778 * 25.00516 * 7 5 4 35 35 H 1.09008 * 109.47572 * 299.99846 * 12 10 8 36 36 H 1.09006 * 109.47438 * 59.99619 * 12 10 8 37 37 H 1.08994 * 109.47489 * 179.97438 * 12 10 8 38 38 H 0.97000 * 120.00131 * 179.97438 * 16 15 13 39 39 H 1.08996 * 112.84723 * 48.80827 * 21 5 4 40 40 H 1.08999 * 113.61181 * 25.43284 * 22 21 5 41 41 H 1.08998 * 113.61680 * 254.52836 * 22 21 5 42 42 H 1.09002 * 113.61445 * 89.11830 * 23 22 21 43 43 H 1.09002 * 113.61408 * 219.93560 * 23 22 21 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 23 22 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8852 -0.0013 6 1 3.6449 3.4240 -0.8430 7 7 3.6927 3.5405 1.2505 8 6 3.5659 4.8814 1.2980 9 8 3.7718 5.5456 0.3043 10 6 3.1671 5.5555 2.5855 11 1 3.9057 5.3334 3.3557 12 6 1.7970 5.0387 3.0287 13 6 3.0963 7.0455 2.3715 14 1 3.3175 7.4626 1.4002 15 6 2.7491 7.8762 3.4157 16 7 2.4793 7.3683 4.5983 17 14 2.6620 9.7233 3.1505 18 1 3.0077 10.0379 1.7411 19 1 1.2860 10.2007 3.4406 20 1 3.6224 10.3996 4.0591 21 6 5.6046 2.8871 -0.1276 22 6 6.2202 4.2963 -0.1373 23 6 7.3439 3.7261 0.7442 24 6 6.3351 2.6629 1.2100 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8901 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9288 0.8891 34 1 3.5278 3.0093 2.0452 35 1 1.0583 5.2607 2.2584 36 1 1.8478 3.9608 3.1834 37 1 1.5087 5.5258 3.9601 38 1 2.2354 7.9528 5.3330 39 1 5.9632 2.2481 -0.9345 40 1 5.6072 5.0440 0.3659 41 1 6.5587 4.6182 -1.1222 42 1 8.1791 3.3163 0.1762 43 1 7.6627 4.4026 1.5371 44 1 6.7661 1.6670 1.3122 45 1 5.7535 2.9649 2.0810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597372765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:55 Heat of formation + Delta-G solvation = -63.267003 kcal Electronic energy + Delta-G solvation = -21635.855260 eV Core-core repulsion = 18652.241211 eV Total energy + Delta-G solvation = -2983.614048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37782 -39.01764 -37.01555 -35.72798 -34.83729 -32.75077 -31.26678 -28.27839 -27.17590 -26.44369 -24.90077 -24.34678 -22.11587 -21.68257 -21.12939 -19.95899 -18.32110 -17.64397 -17.06437 -16.93243 -16.30836 -16.11844 -15.76941 -15.06425 -14.77089 -14.49372 -14.31600 -14.22085 -13.70087 -13.52296 -13.40162 -13.05882 -13.01938 -12.91700 -12.64761 -12.53383 -12.27753 -12.17217 -12.04063 -12.00220 -11.93770 -11.72408 -11.37078 -11.31233 -11.05881 -11.00733 -10.83973 -10.57078 -10.18080 -9.65270 -8.14231 -6.23680 1.37793 1.40004 1.53297 2.05000 2.39211 2.63685 3.15478 3.58845 3.85363 3.87005 4.04182 4.13295 4.13580 4.22406 4.41334 4.50415 4.54708 4.58685 4.76506 4.79702 4.83435 4.88767 4.92676 4.97608 4.99968 5.03287 5.07197 5.09421 5.11130 5.16020 5.20799 5.25067 5.36211 5.46485 5.47449 5.53039 5.57450 5.74218 5.74777 5.87953 5.98436 6.24916 6.80556 6.94806 7.42872 7.68538 8.91689 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005929 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.627938 B = 4721.347801 C = 5967.072360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.110 4.110 5 C 0.151 3.849 6 H 0.055 0.945 7 N -0.713 5.713 8 C 0.525 3.475 9 O -0.576 6.576 10 C 0.024 3.976 11 H 0.035 0.965 12 C -0.117 4.117 13 C -0.523 4.523 14 H 0.047 0.953 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.952 3.048 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.112 4.112 22 C -0.166 4.166 23 C -0.142 4.142 24 C -0.123 4.123 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.405 0.595 35 H 0.020 0.980 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.263 0.737 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 -17.439 -6.442 18.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.159 4.159 4 C -0.147 4.147 5 C 0.047 3.953 6 H 0.073 0.927 7 N -0.366 5.366 8 C 0.314 3.686 9 O -0.456 6.456 10 C 0.003 3.997 11 H 0.053 0.947 12 C -0.175 4.175 13 C -0.561 4.561 14 H 0.065 0.935 15 C -0.180 4.180 16 N -0.551 5.551 17 Si 0.778 3.222 18 H -0.206 1.206 19 H -0.200 1.200 20 H -0.201 1.201 21 C -0.131 4.131 22 C -0.203 4.203 23 C -0.179 4.179 24 C -0.160 4.160 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.241 0.759 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.737 -16.923 -6.979 18.509 hybrid contribution -0.217 1.417 0.331 1.471 sum 2.520 -15.506 -6.647 17.058 Atomic orbital electron populations 1.21800 0.96278 1.01871 1.01388 1.21486 0.95590 0.95745 1.02638 1.21617 0.95498 0.97440 1.01364 1.21774 0.95261 0.93371 1.04322 1.20887 0.93950 0.93947 0.86536 0.92661 1.46029 1.70579 1.06166 1.13784 1.21274 0.74219 0.82225 0.90859 1.90480 1.51270 1.65478 1.38414 1.18780 0.95832 0.94837 0.90301 0.94695 1.21530 0.96198 0.98108 1.01709 1.21316 1.46298 0.91945 0.96563 0.93451 1.25570 0.94896 1.02648 0.94877 1.69955 1.47633 1.36029 1.01525 0.85600 0.78005 0.80838 0.77783 1.20550 1.19992 1.20057 1.23031 0.94079 0.96728 0.99244 1.23318 0.98807 0.98340 0.99884 1.22830 0.97097 0.98731 0.99284 1.22843 0.97114 0.99343 0.96737 0.91778 0.93472 0.93327 0.91152 0.91240 0.93072 0.93454 0.88883 0.89849 0.75907 0.96070 0.93126 0.91346 0.92730 0.86756 0.90931 0.93106 0.88704 0.93401 0.89337 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.91 71.98 0.71 -1.92 16 2 C -0.12 -1.89 5.93 30.60 0.18 -1.71 16 3 C -0.12 -2.51 5.10 30.59 0.16 -2.35 16 4 C -0.11 -2.06 4.75 30.59 0.15 -1.91 16 5 C 0.15 4.14 2.19 44.99 0.10 4.24 16 6 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 7 N -0.71 -23.23 2.94 -442.52 -1.30 -24.53 16 8 C 0.52 23.51 5.94 87.66 0.52 24.03 16 9 O -0.58 -29.95 12.63 -3.05 -0.04 -29.99 16 10 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 11 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 12 C -0.12 -5.38 8.86 71.98 0.64 -4.74 16 13 C -0.52 -30.52 8.37 25.60 0.21 -30.31 16 14 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 15 C 0.02 1.07 5.30 84.66 0.45 1.52 16 16 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 17 Si 0.95 45.63 29.54 68.60 2.03 47.65 16 18 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.11 -2.85 3.58 -10.18 -0.04 -2.89 16 22 C -0.17 -5.55 7.22 31.12 0.22 -5.33 16 23 C -0.14 -3.87 8.07 31.12 0.25 -3.62 16 24 C -0.12 -2.97 7.49 31.21 0.23 -2.74 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.22 7.75 -2.39 -0.02 1.21 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.40 11.37 7.86 -92.71 -0.73 10.64 16 35 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 1.86 7.57 -2.38 -0.02 1.84 16 37 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 38 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 39 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 3.14 4.12 -2.39 -0.01 3.13 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.91 6.77 -2.39 -0.02 1.90 16 Total: -1.00 -66.32 348.04 4.90 -61.41 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.22 Total: 23.48 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.76 Total: -26.55 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.06 Total: -76.01 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.04 Total: -29.99 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -66.32 4.90 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.853 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds