Wall clock time and date at job start Mon Mar 30 2020 07:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47446 * 2 1 4 4 C 1.53006 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46654 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47009 * 304.99085 * 5 4 3 7 7 N 1.46497 * 109.47201 * 64.99997 * 5 4 3 8 8 C 1.34777 * 119.99525 * 204.99403 * 7 5 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 12 12 C 1.52996 * 109.47442 * 60.27868 * 10 8 7 13 13 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00214 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00297 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99907 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.47496 * 89.99791 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99926 * 17 15 13 20 20 H 1.48504 * 109.46915 * 329.99781 * 17 15 13 21 21 C 1.53008 * 109.46508 * 184.99930 * 5 4 3 22 22 C 1.53783 * 113.61282 * 279.13466 * 21 5 4 23 23 C 1.53965 * 87.01693 * 220.05114 * 22 21 5 24 24 C 1.53779 * 113.61178 * 181.52714 * 21 5 4 25 25 H 1.09000 * 109.47031 * 300.00080 * 1 2 3 26 26 H 1.09006 * 109.47145 * 59.99959 * 1 2 3 27 27 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47031 * 239.99920 * 2 1 3 29 29 H 1.09006 * 109.47145 * 120.00041 * 2 1 3 30 30 H 1.09000 * 109.47070 * 59.99945 * 3 2 1 31 31 H 1.09001 * 109.47293 * 299.99786 * 3 2 1 32 32 H 1.09000 * 109.47254 * 59.99959 * 4 3 2 33 33 H 1.09001 * 109.46763 * 300.00012 * 4 3 2 34 34 H 0.97000 * 120.00580 * 25.00149 * 7 5 4 35 35 H 1.08995 * 109.47223 * 59.99497 * 12 10 8 36 36 H 1.08996 * 109.47637 * 180.02562 * 12 10 8 37 37 H 1.09004 * 109.46762 * 299.99804 * 12 10 8 38 38 H 0.97001 * 119.99846 * 179.97438 * 16 15 13 39 39 H 1.09000 * 112.84841 * 50.33370 * 21 5 4 40 40 H 1.09002 * 113.61501 * 334.56737 * 22 21 5 41 41 H 1.08994 * 113.61307 * 105.47506 * 22 21 5 42 42 H 1.08995 * 113.53474 * 270.81373 * 23 22 21 43 43 H 1.09002 * 113.73772 * 139.94355 * 23 22 21 44 44 H 1.08999 * 113.61714 * 254.53201 * 24 21 5 45 45 H 1.09002 * 113.61464 * 25.43271 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6452 3.4244 -0.8414 7 7 3.6930 3.5391 1.2523 8 6 3.5663 4.8800 1.3009 9 8 3.7722 5.5450 0.3077 10 6 3.1621 5.5526 2.5875 11 1 2.1866 5.1806 2.9011 12 6 4.1976 5.2450 3.6710 13 6 3.0865 7.0424 2.3734 14 1 3.3092 7.4605 1.4028 15 6 2.7329 7.8717 3.4165 16 7 2.6674 9.1719 3.2298 17 14 2.3469 7.1486 5.0951 18 1 3.5919 7.0767 5.9014 19 1 1.3566 8.0102 5.7894 20 1 1.7854 5.7839 4.9289 21 6 5.6049 2.8867 -0.1264 22 6 6.3334 2.6226 1.2020 23 6 7.3460 3.6979 0.7677 24 6 6.2236 4.2942 -0.0981 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.5280 3.0073 2.0466 35 1 5.1730 5.6169 3.3574 36 1 3.9051 5.7310 4.6017 37 1 4.2523 4.1674 3.8258 38 1 2.4182 9.7553 3.9637 39 1 5.9620 2.2692 -0.9505 40 1 5.7521 2.9000 2.0814 41 1 6.7610 1.6226 1.2741 42 1 8.1802 3.3017 0.1888 43 1 7.6663 4.3521 1.5786 44 1 6.5628 4.6418 -1.0739 45 1 5.6124 5.0295 0.4253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597372767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:00 Heat of formation + Delta-G solvation = -38.420017 kcal Electronic energy + Delta-G solvation = -21739.215286 eV Core-core repulsion = 18756.678684 eV Total energy + Delta-G solvation = -2982.536602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10564 -37.63803 -36.10908 -33.79747 -33.68020 -31.46072 -30.29105 -27.31625 -25.31669 -25.11883 -23.83845 -23.02207 -21.21530 -20.69768 -19.46783 -18.80600 -16.75326 -16.02673 -15.92653 -15.64514 -15.19086 -14.75917 -14.35660 -13.91348 -13.55468 -13.37355 -13.16667 -12.84086 -12.59916 -12.40785 -12.22922 -12.12504 -11.85622 -11.53956 -11.41801 -11.23476 -11.15866 -10.93637 -10.78547 -10.62544 -10.58400 -10.31602 -10.17871 -9.91171 -9.75717 -9.61722 -9.07475 -8.64553 -8.54236 -8.32731 -6.03163 -4.02984 3.24131 3.31605 3.37277 3.61360 3.86870 4.39354 4.54963 4.86368 4.90315 4.93656 5.01470 5.08854 5.18479 5.26552 5.27592 5.41043 5.46540 5.64598 5.70278 5.74867 5.81778 5.84736 5.89090 5.91179 5.97331 6.07754 6.10130 6.14077 6.17304 6.19697 6.27434 6.33363 6.36214 6.42793 6.48439 6.60775 6.75232 6.96047 7.12655 7.18848 7.57955 8.19693 8.58377 9.13872 9.19811 9.56405 11.09850 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.006371 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.043963 B = 4393.861225 C = 5523.048798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.122 4.122 5 C 0.153 3.847 6 H 0.085 0.915 7 N -0.737 5.737 8 C 0.529 3.471 9 O -0.525 6.525 10 C -0.006 4.006 11 H 0.050 0.950 12 C -0.144 4.144 13 C -0.503 4.503 14 H 0.094 0.906 15 C 0.070 3.930 16 N -0.897 5.897 17 Si 0.883 3.117 18 H -0.279 1.279 19 H -0.296 1.296 20 H -0.268 1.268 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.147 4.147 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.392 0.608 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -19.457 -3.558 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.160 4.160 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.391 5.391 8 C 0.318 3.682 9 O -0.400 6.400 10 C -0.028 4.028 11 H 0.068 0.932 12 C -0.201 4.201 13 C -0.541 4.541 14 H 0.112 0.888 15 C -0.132 4.132 16 N -0.535 5.535 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.193 1.193 21 C -0.143 4.143 22 C -0.169 4.169 23 C -0.184 4.184 24 C -0.182 4.182 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.226 0.774 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.585 -18.764 -4.218 19.405 hybrid contribution -0.194 -0.582 1.384 1.514 sum 2.391 -19.346 -2.834 19.698 Atomic orbital electron populations 1.21780 0.96053 1.01232 1.02039 1.21526 0.95780 0.97128 1.01610 1.21641 0.95137 0.96331 1.02831 1.21829 0.95713 0.95990 1.02439 1.20736 0.93397 0.92367 0.88676 0.89734 1.46287 1.72546 1.07773 1.12448 1.21160 0.74793 0.80625 0.91608 1.90553 1.48400 1.63913 1.37123 1.19316 0.95743 0.98489 0.89257 0.93247 1.22113 1.00777 0.97994 0.99240 1.20944 1.46229 0.87108 0.99830 0.88844 1.24981 0.95044 0.94746 0.98385 1.69885 1.48431 1.02833 1.32327 0.86932 0.77691 0.78943 0.85047 1.20604 1.22388 1.19313 1.22972 0.94770 0.98580 0.97938 1.22900 0.97950 0.98073 0.97977 1.22835 0.96811 0.98631 1.00122 1.23341 0.97413 0.97140 1.00300 0.92640 0.92768 0.93098 0.92344 0.92251 0.91482 0.91927 0.91092 0.91662 0.77377 0.92412 0.93398 0.94959 0.92630 0.89633 0.89718 0.92516 0.91231 0.91835 0.92619 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.15 0.37 -0.98 16 2 C -0.12 -1.09 5.93 -26.74 -0.16 -1.24 16 3 C -0.12 -1.28 5.10 -26.73 -0.14 -1.41 16 4 C -0.12 -1.24 4.73 -26.73 -0.13 -1.37 16 5 C 0.15 2.08 2.19 -67.93 -0.15 1.93 16 6 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 7 N -0.74 -11.32 3.00 -53.80 -0.16 -11.48 16 8 C 0.53 10.99 5.86 -10.98 -0.06 10.92 16 9 O -0.52 -12.80 12.70 5.55 0.07 -12.73 16 10 C -0.01 -0.15 2.23 -92.92 -0.21 -0.35 16 11 H 0.05 1.11 7.20 -51.92 -0.37 0.74 16 12 C -0.14 -2.90 8.57 37.16 0.32 -2.59 16 13 C -0.50 -14.37 8.96 -34.44 -0.31 -14.68 16 14 H 0.09 3.05 7.00 -52.49 -0.37 2.68 16 15 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 17 Si 0.88 21.34 24.37 -169.99 -4.14 17.19 16 18 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 19 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.01 6.53 56.52 0.37 -5.65 16 21 C -0.12 -1.62 3.58 -89.80 -0.32 -1.94 16 22 C -0.13 -1.65 7.47 -25.82 -0.19 -1.84 16 23 C -0.15 -2.01 8.09 -25.82 -0.21 -2.22 16 24 C -0.15 -2.35 7.18 -25.92 -0.19 -2.53 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.78 7.75 -51.93 -0.40 0.37 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.39 5.17 7.85 -40.82 -0.32 4.85 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.02 3.28 -51.93 -0.17 0.85 16 37 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.13 6.81 -51.93 -0.35 0.77 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.11 2.30 4.13 -51.93 -0.21 2.08 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -31.43 341.23 -7.88 -39.31 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.09 Total: 5.90 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.47 Total: -16.40 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.61 Total: -38.42 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.43 -7.88 -39.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.886 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds