Wall clock time and date at job start Mon Mar 30 2020 07:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47446 * 2 1 4 4 C 1.53006 * 109.47160 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46654 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47009 * 304.99085 * 5 4 3 7 7 N 1.46497 * 109.47201 * 64.99997 * 5 4 3 8 8 C 1.34777 * 119.99525 * 204.99403 * 7 5 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 5 11 11 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 12 12 C 1.52996 * 109.47442 * 60.27868 * 10 8 7 13 13 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 10 8 15 15 C 1.37875 * 120.00214 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00297 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99907 * 359.97438 * 15 13 10 18 18 H 1.48502 * 109.47496 * 89.99791 * 17 15 13 19 19 H 1.48503 * 109.47098 * 209.99926 * 17 15 13 20 20 H 1.48504 * 109.46915 * 329.99781 * 17 15 13 21 21 C 1.53008 * 109.46508 * 184.99930 * 5 4 3 22 22 C 1.53783 * 113.61282 * 279.13466 * 21 5 4 23 23 C 1.53965 * 87.01693 * 220.05114 * 22 21 5 24 24 C 1.53779 * 113.61178 * 181.52714 * 21 5 4 25 25 H 1.09000 * 109.47031 * 300.00080 * 1 2 3 26 26 H 1.09006 * 109.47145 * 59.99959 * 1 2 3 27 27 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47031 * 239.99920 * 2 1 3 29 29 H 1.09006 * 109.47145 * 120.00041 * 2 1 3 30 30 H 1.09000 * 109.47070 * 59.99945 * 3 2 1 31 31 H 1.09001 * 109.47293 * 299.99786 * 3 2 1 32 32 H 1.09000 * 109.47254 * 59.99959 * 4 3 2 33 33 H 1.09001 * 109.46763 * 300.00012 * 4 3 2 34 34 H 0.97000 * 120.00580 * 25.00149 * 7 5 4 35 35 H 1.08995 * 109.47223 * 59.99497 * 12 10 8 36 36 H 1.08996 * 109.47637 * 180.02562 * 12 10 8 37 37 H 1.09004 * 109.46762 * 299.99804 * 12 10 8 38 38 H 0.97001 * 119.99846 * 179.97438 * 16 15 13 39 39 H 1.09000 * 112.84841 * 50.33370 * 21 5 4 40 40 H 1.09002 * 113.61501 * 334.56737 * 22 21 5 41 41 H 1.08994 * 113.61307 * 105.47506 * 22 21 5 42 42 H 1.08995 * 113.53474 * 270.81373 * 23 22 21 43 43 H 1.09002 * 113.73772 * 139.94355 * 23 22 21 44 44 H 1.08999 * 113.61714 * 254.53201 * 24 21 5 45 45 H 1.09002 * 113.61464 * 25.43271 * 24 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6452 3.4244 -0.8414 7 7 3.6930 3.5391 1.2523 8 6 3.5663 4.8800 1.3009 9 8 3.7722 5.5450 0.3077 10 6 3.1621 5.5526 2.5875 11 1 2.1866 5.1806 2.9011 12 6 4.1976 5.2450 3.6710 13 6 3.0865 7.0424 2.3734 14 1 3.3092 7.4605 1.4028 15 6 2.7329 7.8717 3.4165 16 7 2.6674 9.1719 3.2298 17 14 2.3469 7.1486 5.0951 18 1 3.5919 7.0767 5.9014 19 1 1.3566 8.0102 5.7894 20 1 1.7854 5.7839 4.9289 21 6 5.6049 2.8867 -0.1264 22 6 6.3334 2.6226 1.2020 23 6 7.3460 3.6979 0.7677 24 6 6.2236 4.2942 -0.0981 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 3.5280 3.0073 2.0466 35 1 5.1730 5.6169 3.3574 36 1 3.9051 5.7310 4.6017 37 1 4.2523 4.1674 3.8258 38 1 2.4182 9.7553 3.9637 39 1 5.9620 2.2692 -0.9505 40 1 5.7521 2.9000 2.0814 41 1 6.7610 1.6226 1.2741 42 1 8.1802 3.3017 0.1888 43 1 7.6663 4.3521 1.5786 44 1 6.5628 4.6418 -1.0739 45 1 5.6124 5.0295 0.4253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597372767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:00 Heat of formation + Delta-G solvation = -58.064372 kcal Electronic energy + Delta-G solvation = -21740.067129 eV Core-core repulsion = 18756.678684 eV Total energy + Delta-G solvation = -2983.388445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45776 -39.06826 -37.02288 -35.75410 -34.87787 -33.35831 -31.49714 -28.32145 -27.09453 -26.44005 -25.03510 -24.45848 -22.11418 -21.69057 -21.09276 -19.97633 -18.76392 -17.68578 -17.22171 -16.91180 -16.41396 -16.09927 -15.70808 -15.33471 -14.91997 -14.52911 -14.36960 -14.24844 -14.03676 -13.66323 -13.58927 -13.32977 -13.07584 -12.98391 -12.67510 -12.50950 -12.31311 -12.10056 -12.00667 -11.94545 -11.73821 -11.46841 -11.36801 -11.30430 -11.19147 -11.07227 -10.83988 -10.76182 -10.30992 -9.70774 -8.25848 -6.32785 1.32542 1.39043 1.50148 1.97422 2.34566 2.49907 3.08156 3.58769 3.85663 3.86425 4.04687 4.13475 4.13504 4.20695 4.22846 4.44557 4.49888 4.53862 4.57897 4.62978 4.72002 4.82231 4.83707 4.90447 4.95024 5.00210 5.02365 5.07054 5.10930 5.11695 5.16786 5.21334 5.25665 5.36324 5.45493 5.46939 5.48614 5.55688 5.57582 5.73948 5.84982 6.29496 6.74375 6.93833 7.29108 7.64010 8.91998 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.006371 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.043963 B = 4393.861225 C = 5523.048798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.123 4.123 4 C -0.109 4.109 5 C 0.152 3.848 6 H 0.052 0.948 7 N -0.711 5.711 8 C 0.530 3.470 9 O -0.573 6.573 10 C -0.011 4.011 11 H 0.064 0.936 12 C -0.137 4.137 13 C -0.515 4.515 14 H 0.029 0.971 15 C 0.005 3.995 16 N -0.955 5.955 17 Si 0.959 3.041 18 H -0.262 1.262 19 H -0.301 1.301 20 H -0.231 1.231 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.168 4.168 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.409 0.591 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.266 0.734 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -24.304 -1.659 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.160 4.160 4 C -0.146 4.146 5 C 0.047 3.953 6 H 0.071 0.929 7 N -0.364 5.364 8 C 0.319 3.681 9 O -0.452 6.452 10 C -0.032 4.032 11 H 0.082 0.918 12 C -0.194 4.194 13 C -0.554 4.554 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.595 5.595 17 Si 0.784 3.216 18 H -0.188 1.188 19 H -0.229 1.229 20 H -0.154 1.154 21 C -0.131 4.131 22 C -0.156 4.156 23 C -0.180 4.180 24 C -0.205 4.205 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.078 -23.690 -2.319 24.002 hybrid contribution -0.328 1.011 0.618 1.229 sum 2.750 -22.679 -1.700 22.909 Atomic orbital electron populations 1.21805 0.96353 1.01844 1.01388 1.21485 0.95515 0.95778 1.02684 1.21633 0.95541 0.97431 1.01433 1.21773 0.95183 0.93177 1.04515 1.20881 0.93963 0.94019 0.86409 0.92930 1.45962 1.70667 1.05818 1.14000 1.20814 0.74784 0.82293 0.90252 1.90552 1.50745 1.65490 1.38448 1.19260 0.97504 0.94857 0.91606 0.91831 1.21993 0.98753 1.01371 0.97318 1.21107 1.46000 0.90860 0.97404 0.95274 1.26029 0.94598 0.94856 1.03664 1.70087 1.50302 1.05008 1.34109 0.85722 0.78075 0.79563 0.78273 1.18782 1.22909 1.15380 1.22975 0.94075 0.96441 0.99650 1.22840 0.96858 0.99147 0.96797 1.22859 0.97010 0.98726 0.99368 1.23314 0.99036 0.98323 0.99857 0.93300 0.93496 0.91854 0.91347 0.90990 0.92734 0.93666 0.89063 0.89358 0.75421 0.93769 0.93871 0.89683 0.92539 0.87034 0.90362 0.89218 0.89046 0.93147 0.93757 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.67 5.93 30.59 0.18 -1.49 16 3 C -0.12 -2.27 5.10 30.60 0.16 -2.12 16 4 C -0.11 -1.80 4.73 30.60 0.14 -1.65 16 5 C 0.15 3.86 2.19 45.00 0.10 3.96 16 6 H 0.05 1.71 7.58 -2.39 -0.02 1.69 16 7 N -0.71 -20.73 3.00 -442.52 -1.33 -22.06 16 8 C 0.53 22.44 5.86 87.66 0.51 22.96 16 9 O -0.57 -29.99 12.70 -3.04 -0.04 -30.03 16 10 C -0.01 -0.48 2.23 -12.29 -0.03 -0.51 16 11 H 0.06 2.72 7.20 -2.38 -0.02 2.71 16 12 C -0.14 -5.20 8.57 71.98 0.62 -4.58 16 13 C -0.52 -30.98 8.96 25.60 0.23 -30.75 16 14 H 0.03 2.07 7.00 -2.91 -0.02 2.05 16 15 C 0.00 0.27 5.45 84.65 0.46 0.73 16 16 N -0.95 -62.08 13.96 21.45 0.30 -61.78 16 17 Si 0.96 43.59 24.37 68.60 1.67 45.27 16 18 H -0.26 -11.17 6.87 99.48 0.68 -10.49 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.23 -9.06 6.53 99.48 0.65 -8.41 16 21 C -0.11 -2.69 3.58 -10.26 -0.04 -2.73 16 22 C -0.12 -2.53 7.47 31.18 0.23 -2.29 16 23 C -0.14 -3.65 8.09 31.18 0.25 -3.40 16 24 C -0.17 -5.51 7.18 31.12 0.22 -5.29 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 9.25 7.85 -92.71 -0.73 8.53 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 1.68 3.28 -2.39 -0.01 1.68 16 37 H 0.08 2.31 7.57 -2.38 -0.02 2.30 16 38 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 1.76 6.81 -2.39 -0.02 1.75 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 3.06 4.13 -2.39 -0.01 3.05 16 Total: -1.00 -76.51 341.23 4.51 -72.00 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.14 Total: 25.45 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 3.76 Total: -28.86 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.03 Total: -83.84 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.04 Total: -30.03 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.27 kcal Total: -76.51 4.51 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.936 kcal (2) G-P(sol) polarization free energy of solvation -76.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds