Wall clock time and date at job start Mon Mar 30 2020 07:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 C 1.53009 * 109.46667 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46692 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47238 * 54.99725 * 5 4 3 7 7 N 1.46498 * 109.47200 * 294.99559 * 5 4 3 8 8 C 1.34769 * 120.00082 * 127.00225 * 7 5 4 9 9 O 1.21282 * 119.99736 * 5.32441 * 8 7 5 10 10 C 1.50702 * 120.00286 * 185.32770 * 8 7 5 11 11 H 1.09006 * 109.46798 * 59.99940 * 10 8 7 12 12 C 1.52998 * 109.47040 * 300.00060 * 10 8 7 13 13 C 1.50699 * 109.47175 * 179.97438 * 10 8 7 14 14 H 1.08000 * 120.00007 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99756 * 180.02562 * 13 10 8 16 16 N 1.31513 * 119.99963 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46987 * 89.99641 * 17 15 13 19 19 H 1.48499 * 109.47444 * 209.99679 * 17 15 13 20 20 H 1.48500 * 109.46988 * 330.00035 * 17 15 13 21 21 C 1.53004 * 109.46696 * 174.99741 * 5 4 3 22 22 C 1.53773 * 113.61277 * 179.55362 * 21 5 4 23 23 C 1.53779 * 87.08325 * 220.01804 * 22 21 5 24 24 C 1.53780 * 87.17024 * 25.38778 * 23 22 21 25 25 H 1.08995 * 109.46650 * 59.99997 * 1 2 3 26 26 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47038 * 300.00598 * 1 2 3 28 28 H 1.08996 * 109.47197 * 239.99605 * 2 1 3 29 29 H 1.08996 * 109.46620 * 119.99451 * 2 1 3 30 30 H 1.08996 * 109.47488 * 59.99783 * 3 2 1 31 31 H 1.08996 * 109.47006 * 299.99215 * 3 2 1 32 32 H 1.08996 * 109.47546 * 59.99571 * 4 3 2 33 33 H 1.08996 * 109.46564 * 299.99238 * 4 3 2 34 34 H 0.97006 * 119.99930 * 306.99953 * 7 5 4 35 35 H 1.09004 * 109.46835 * 299.99966 * 12 10 8 36 36 H 1.08998 * 109.47293 * 59.99722 * 12 10 8 37 37 H 1.08997 * 109.47124 * 180.02562 * 12 10 8 38 38 H 0.97003 * 119.99795 * 180.02562 * 16 15 13 39 39 H 1.09008 * 112.90570 * 310.80385 * 21 5 4 40 40 H 1.09003 * 113.62061 * 105.46981 * 22 21 5 41 41 H 1.08998 * 113.61810 * 334.56638 * 22 21 5 42 42 H 1.08998 * 113.62060 * 139.97967 * 23 22 21 43 43 H 1.09003 * 113.61510 * 270.79992 * 23 22 21 44 44 H 1.09007 * 113.61328 * 89.16263 * 24 23 22 45 45 H 1.08996 * 113.61637 * 220.06043 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8850 -0.0013 6 1 3.6458 3.4243 0.8405 7 7 3.6921 3.5395 -1.2532 8 6 3.0314 4.7138 -1.2230 9 8 2.8429 5.2765 -0.1652 10 6 2.5268 5.3277 -2.5034 11 1 1.8264 4.6437 -2.9829 12 6 3.7060 5.5910 -3.4421 13 6 1.8285 6.6273 -2.1964 14 1 1.7568 6.9739 -1.1760 15 6 1.2801 7.3733 -3.2181 16 7 1.3661 6.9505 -4.4604 17 14 0.4138 8.9840 -2.8374 18 1 1.3955 10.0973 -2.8852 19 1 -0.6534 9.2216 -3.8423 20 1 -0.1891 8.9135 -1.4822 21 6 5.6050 2.8867 0.1239 22 6 6.2215 4.2955 0.1219 23 6 7.3441 3.7176 -0.7559 24 6 6.3349 2.6501 -1.2108 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9331 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 3.9108 3.1278 -2.1038 35 1 4.4063 6.2750 -2.9625 36 1 4.2107 4.6508 -3.6641 37 1 3.3411 6.0355 -4.3680 38 1 0.9806 7.4756 -5.1792 39 1 5.9649 2.2537 0.9350 40 1 6.5610 4.6250 1.1040 41 1 5.6087 5.0396 -0.3868 42 1 7.6618 4.3869 -1.5553 43 1 8.1802 3.3130 -0.1853 44 1 5.7531 2.9436 -2.0847 45 1 6.7657 1.6532 -1.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597372768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:05 Heat of formation + Delta-G solvation = -52.866268 kcal Electronic energy + Delta-G solvation = -21576.943643 eV Core-core repulsion = 18593.780605 eV Total energy + Delta-G solvation = -2983.163039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86830 -37.78842 -35.88745 -33.70073 -33.49197 -31.06809 -29.77018 -27.23172 -25.49036 -25.10051 -23.73982 -22.74657 -21.09624 -20.62927 -19.52407 -18.71420 -16.27912 -16.17217 -15.73393 -15.45005 -14.99565 -14.62494 -14.20298 -13.78262 -13.49485 -13.24671 -13.03309 -12.60068 -12.48511 -12.20871 -12.07858 -12.04264 -11.45513 -11.35010 -11.14164 -11.03851 -11.00348 -10.76443 -10.69766 -10.60918 -10.44292 -10.32000 -10.24048 -9.96859 -9.91447 -9.87639 -8.93484 -8.53599 -8.29063 -8.26735 -6.00032 -4.02666 3.35450 3.41125 3.48173 3.80969 4.02672 4.50623 4.61541 4.85217 4.86423 5.00771 5.04497 5.08448 5.17686 5.33317 5.42283 5.49387 5.54822 5.74219 5.78405 5.83194 5.87679 5.95344 5.97560 6.03377 6.04718 6.05512 6.14142 6.18942 6.24642 6.34488 6.42277 6.52676 6.58393 6.65429 6.71189 6.86357 6.97417 7.26553 7.52299 7.79601 8.03591 8.21015 8.53403 9.06673 9.34450 9.63031 11.07563 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.006199 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.860949 B = 4516.001294 C = 5853.947119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.122 4.122 5 C 0.145 3.855 6 H 0.096 0.904 7 N -0.735 5.735 8 C 0.521 3.479 9 O -0.547 6.547 10 C 0.028 3.972 11 H 0.050 0.950 12 C -0.131 4.131 13 C -0.498 4.498 14 H 0.073 0.927 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.273 1.273 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.134 4.134 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.010 0.990 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -13.437 5.703 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.161 4.161 5 C 0.040 3.960 6 H 0.114 0.886 7 N -0.390 5.390 8 C 0.311 3.689 9 O -0.423 6.423 10 C 0.007 3.993 11 H 0.068 0.932 12 C -0.189 4.189 13 C -0.536 4.536 14 H 0.092 0.908 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.140 4.140 22 C -0.169 4.169 23 C -0.180 4.180 24 C -0.172 4.172 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.049 0.951 36 H 0.029 0.971 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.912 -12.957 6.302 15.980 hybrid contribution -0.294 0.615 -0.313 0.750 sum 6.617 -12.342 5.989 15.231 Atomic orbital electron populations 1.21780 0.96086 1.01074 1.02153 1.21515 0.95787 0.97223 1.01366 1.21598 0.95123 0.96132 1.02928 1.21880 0.95914 0.96419 1.01851 1.20751 0.92906 0.92635 0.89747 0.88619 1.46310 1.60537 1.24210 1.07893 1.21892 0.75017 0.78793 0.93177 1.90520 1.57088 1.61296 1.33381 1.18861 0.94986 0.97138 0.88285 0.93192 1.21730 0.96616 0.97625 1.02935 1.21152 1.33971 1.04008 0.94518 0.90844 1.24946 0.96217 0.98156 0.94964 1.69874 1.46077 1.38737 0.99016 0.86483 0.79220 0.83574 0.78119 1.20715 1.21346 1.19781 1.22973 0.95063 0.97941 0.98042 1.22881 0.97353 0.96881 0.99788 1.22775 0.96703 0.98702 0.99841 1.22922 0.97888 0.98476 0.97886 0.92515 0.93197 0.92826 0.92335 0.92547 0.92120 0.91344 0.91956 0.91608 0.77218 0.95104 0.97083 0.88973 0.93048 0.89289 0.92239 0.89317 0.91730 0.90872 0.89756 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.56 5.10 -26.73 -0.14 -1.70 16 4 C -0.12 -1.44 4.88 -26.72 -0.13 -1.57 16 5 C 0.15 2.09 2.32 -67.93 -0.16 1.93 16 6 H 0.10 1.65 6.97 -51.93 -0.36 1.29 16 7 N -0.74 -12.25 3.16 -53.80 -0.17 -12.42 16 8 C 0.52 11.53 6.50 -10.99 -0.07 11.45 16 9 O -0.55 -13.94 14.83 5.56 0.08 -13.86 16 10 C 0.03 0.70 2.65 -92.92 -0.25 0.45 16 11 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 13 C -0.50 -14.14 8.37 -34.44 -0.29 -14.43 16 14 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 16 N -0.90 -25.29 11.32 55.43 0.63 -24.67 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.12 -1.52 3.58 -89.72 -0.32 -1.84 16 22 C -0.13 -1.88 7.53 -25.92 -0.20 -2.08 16 23 C -0.14 -1.72 8.08 -25.92 -0.21 -1.93 16 24 C -0.13 -1.57 7.47 -25.83 -0.19 -1.76 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 5.90 6.61 -40.82 -0.27 5.63 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.01 0.20 7.45 -51.93 -0.39 -0.19 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.58 7.12 -51.93 -0.37 1.21 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.06 6.10 -51.92 -0.32 0.75 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -29.80 351.93 -8.94 -38.74 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.25 Total: 5.30 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.50 Total: -15.37 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.46 Total: -37.09 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.80 -8.94 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.129 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds