Wall clock time and date at job start Mon Mar 30 2020 07:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 C 1.53009 * 109.46667 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46692 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47238 * 54.99725 * 5 4 3 7 7 N 1.46498 * 109.47200 * 294.99559 * 5 4 3 8 8 C 1.34769 * 120.00082 * 127.00225 * 7 5 4 9 9 O 1.21282 * 119.99736 * 5.32441 * 8 7 5 10 10 C 1.50702 * 120.00286 * 185.32770 * 8 7 5 11 11 H 1.09006 * 109.46798 * 59.99940 * 10 8 7 12 12 C 1.52998 * 109.47040 * 300.00060 * 10 8 7 13 13 C 1.50699 * 109.47175 * 179.97438 * 10 8 7 14 14 H 1.08000 * 120.00007 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99756 * 180.02562 * 13 10 8 16 16 N 1.31513 * 119.99963 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46987 * 89.99641 * 17 15 13 19 19 H 1.48499 * 109.47444 * 209.99679 * 17 15 13 20 20 H 1.48500 * 109.46988 * 330.00035 * 17 15 13 21 21 C 1.53004 * 109.46696 * 174.99741 * 5 4 3 22 22 C 1.53773 * 113.61277 * 179.55362 * 21 5 4 23 23 C 1.53779 * 87.08325 * 220.01804 * 22 21 5 24 24 C 1.53780 * 87.17024 * 25.38778 * 23 22 21 25 25 H 1.08995 * 109.46650 * 59.99997 * 1 2 3 26 26 H 1.08998 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47038 * 300.00598 * 1 2 3 28 28 H 1.08996 * 109.47197 * 239.99605 * 2 1 3 29 29 H 1.08996 * 109.46620 * 119.99451 * 2 1 3 30 30 H 1.08996 * 109.47488 * 59.99783 * 3 2 1 31 31 H 1.08996 * 109.47006 * 299.99215 * 3 2 1 32 32 H 1.08996 * 109.47546 * 59.99571 * 4 3 2 33 33 H 1.08996 * 109.46564 * 299.99238 * 4 3 2 34 34 H 0.97006 * 119.99930 * 306.99953 * 7 5 4 35 35 H 1.09004 * 109.46835 * 299.99966 * 12 10 8 36 36 H 1.08998 * 109.47293 * 59.99722 * 12 10 8 37 37 H 1.08997 * 109.47124 * 180.02562 * 12 10 8 38 38 H 0.97003 * 119.99795 * 180.02562 * 16 15 13 39 39 H 1.09008 * 112.90570 * 310.80385 * 21 5 4 40 40 H 1.09003 * 113.62061 * 105.46981 * 22 21 5 41 41 H 1.08998 * 113.61810 * 334.56638 * 22 21 5 42 42 H 1.08998 * 113.62060 * 139.97967 * 23 22 21 43 43 H 1.09003 * 113.61510 * 270.79992 * 23 22 21 44 44 H 1.09007 * 113.61328 * 89.16263 * 24 23 22 45 45 H 1.08996 * 113.61637 * 220.06043 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8850 -0.0013 6 1 3.6458 3.4243 0.8405 7 7 3.6921 3.5395 -1.2532 8 6 3.0314 4.7138 -1.2230 9 8 2.8429 5.2765 -0.1652 10 6 2.5268 5.3277 -2.5034 11 1 1.8264 4.6437 -2.9829 12 6 3.7060 5.5910 -3.4421 13 6 1.8285 6.6273 -2.1964 14 1 1.7568 6.9739 -1.1760 15 6 1.2801 7.3733 -3.2181 16 7 1.3661 6.9505 -4.4604 17 14 0.4138 8.9840 -2.8374 18 1 1.3955 10.0973 -2.8852 19 1 -0.6534 9.2216 -3.8423 20 1 -0.1891 8.9135 -1.4822 21 6 5.6050 2.8867 0.1239 22 6 6.2215 4.2955 0.1219 23 6 7.3441 3.7176 -0.7559 24 6 6.3349 2.6501 -1.2108 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9331 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 3.9108 3.1278 -2.1038 35 1 4.4063 6.2750 -2.9625 36 1 4.2107 4.6508 -3.6641 37 1 3.3411 6.0355 -4.3680 38 1 0.9806 7.4756 -5.1792 39 1 5.9649 2.2537 0.9350 40 1 6.5610 4.6250 1.1040 41 1 5.6087 5.0396 -0.3868 42 1 7.6618 4.3869 -1.5553 43 1 8.1802 3.3130 -0.1853 44 1 5.7531 2.9436 -2.0847 45 1 6.7657 1.6532 -1.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597372768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:04 Heat of formation + Delta-G solvation = -68.521570 kcal Electronic energy + Delta-G solvation = -21577.622508 eV Core-core repulsion = 18593.780605 eV Total energy + Delta-G solvation = -2983.841903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23213 -39.26891 -36.94388 -35.74872 -34.82814 -32.79332 -31.27010 -28.32796 -27.19604 -26.52349 -24.82832 -24.42663 -22.13063 -21.74287 -21.19864 -19.86904 -18.30906 -17.83546 -17.09961 -16.67104 -16.34823 -16.11853 -15.63260 -15.35475 -14.75173 -14.49846 -14.34444 -14.28280 -13.66933 -13.53592 -13.28347 -13.16683 -13.06664 -12.96327 -12.69509 -12.59870 -12.31310 -12.20570 -12.06934 -12.01526 -11.98469 -11.71855 -11.41892 -11.32812 -11.04819 -11.03731 -10.96159 -10.58156 -10.21657 -9.73798 -8.15449 -6.25329 1.38522 1.39031 1.51050 2.02986 2.38091 2.61953 3.13943 3.57275 3.82107 3.84894 4.01980 4.10097 4.11234 4.21220 4.37846 4.48829 4.52781 4.56665 4.73694 4.77665 4.82291 4.89655 4.92045 4.93901 4.97248 4.99500 5.02071 5.08525 5.09621 5.13606 5.15419 5.23721 5.32005 5.42462 5.44208 5.50863 5.54286 5.66624 5.72781 5.87101 5.96734 6.23017 6.78087 6.91951 7.41011 7.65650 8.90306 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.006199 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.860949 B = 4516.001294 C = 5853.947119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.111 4.111 5 C 0.143 3.857 6 H 0.062 0.938 7 N -0.712 5.712 8 C 0.526 3.474 9 O -0.589 6.589 10 C 0.024 3.976 11 H 0.036 0.964 12 C -0.116 4.116 13 C -0.526 4.526 14 H 0.046 0.954 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.274 1.274 20 H -0.280 1.280 21 C -0.111 4.111 22 C -0.148 4.148 23 C -0.134 4.134 24 C -0.127 4.127 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.405 0.595 35 H 0.019 0.981 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -15.762 5.688 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.149 4.149 5 C 0.038 3.962 6 H 0.081 0.919 7 N -0.365 5.365 8 C 0.315 3.685 9 O -0.469 6.469 10 C 0.002 3.998 11 H 0.054 0.946 12 C -0.174 4.174 13 C -0.565 4.565 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.205 1.205 21 C -0.130 4.130 22 C -0.186 4.186 23 C -0.171 4.171 24 C -0.165 4.165 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.242 0.758 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.413 -15.329 6.259 18.572 hybrid contribution -0.757 1.325 -0.284 1.552 sum 7.656 -14.004 5.975 17.042 Atomic orbital electron populations 1.21808 0.96481 1.01948 1.01145 1.21477 0.95465 0.95532 1.02754 1.21581 0.96343 0.97391 1.00563 1.21834 0.94641 0.94365 1.04105 1.20944 0.94593 0.93670 0.87014 0.91929 1.46014 1.58504 1.22300 1.09709 1.21354 0.75519 0.80102 0.91523 1.90496 1.59183 1.62910 1.34303 1.18786 0.95313 0.95704 0.89957 0.94599 1.21516 0.95728 0.99160 1.00975 1.21286 1.35615 1.06099 0.93482 0.93580 1.25583 0.96624 1.00893 0.94873 1.69950 1.46102 1.39615 0.99381 0.85639 0.78575 0.80202 0.77737 1.19968 1.19878 1.20511 1.22998 0.93070 0.97080 0.99898 1.22876 0.98528 0.97120 1.00038 1.22781 0.96729 0.98391 0.99218 1.22888 0.97231 0.99859 0.96496 0.93973 0.91345 0.93481 0.91157 0.90757 0.94116 0.94246 0.89921 0.88870 0.75843 0.96144 0.93143 0.91269 0.92653 0.86323 0.92099 0.93639 0.92464 0.88408 0.90965 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.91 71.99 0.71 -2.51 16 2 C -0.11 -2.23 5.93 30.60 0.18 -2.05 16 3 C -0.12 -3.05 5.10 30.60 0.16 -2.90 16 4 C -0.11 -2.32 4.88 30.60 0.15 -2.18 16 5 C 0.14 3.97 2.32 44.99 0.10 4.08 16 6 H 0.06 2.22 6.97 -2.39 -0.02 2.20 16 7 N -0.71 -23.78 3.16 -442.53 -1.40 -25.18 16 8 C 0.53 24.22 6.50 87.66 0.57 24.79 16 9 O -0.59 -31.81 14.83 -3.04 -0.05 -31.85 16 10 C 0.02 1.21 2.65 -12.29 -0.03 1.18 16 11 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 12 C -0.12 -5.35 8.87 71.98 0.64 -4.71 16 13 C -0.53 -31.16 8.37 25.60 0.21 -30.94 16 14 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 15 C 0.02 1.10 5.30 84.66 0.45 1.55 16 16 N -0.91 -51.95 11.32 21.45 0.24 -51.71 16 17 Si 0.95 45.86 29.54 68.60 2.03 47.88 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 21 C -0.11 -2.52 3.58 -10.21 -0.04 -2.56 16 22 C -0.15 -4.15 7.53 31.12 0.23 -3.91 16 23 C -0.13 -2.88 8.08 31.12 0.25 -2.63 16 24 C -0.13 -2.54 7.47 31.18 0.23 -2.30 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.20 7.75 -2.39 -0.02 1.19 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.40 11.69 6.61 -92.70 -0.61 11.08 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.87 7.45 -2.39 -0.02 1.85 16 37 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 38 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.68 7.12 -2.39 -0.02 1.66 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.62 6.10 -2.38 -0.01 1.60 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.02 351.93 4.98 -63.04 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.33 Total: 22.92 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.83 Total: -25.11 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.16 Total: -76.89 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.02 4.98 -63.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597372768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.477 kcal (2) G-P(sol) polarization free energy of solvation -68.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds