Wall clock time and date at job start Mon Mar 30 2020 07:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.52993 * 109.47234 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47043 * 187.31882 * 5 4 3 7 7 H 1.08997 * 109.87370 * 57.05785 * 6 5 4 8 8 C 1.54324 * 109.87836 * 178.07459 * 6 5 4 9 9 C 1.55158 * 102.94300 * 141.61336 * 8 6 5 10 10 C 1.54909 * 101.57831 * 324.49446 * 9 8 6 11 11 N 1.47021 * 109.88477 * 295.87923 * 6 5 4 12 12 C 1.34777 * 125.64667 * 61.62072 * 11 6 5 13 13 O 1.21278 * 120.00194 * 8.07632 * 12 11 6 14 14 C 1.50698 * 119.99860 * 188.07278 * 12 11 6 15 15 H 1.08999 * 109.47381 * 41.86955 * 14 12 11 16 16 C 1.53005 * 109.47367 * 281.86853 * 14 12 11 17 17 C 1.50700 * 109.47192 * 161.87023 * 14 12 11 18 18 H 1.08003 * 120.00161 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00177 * 180.02562 * 17 14 12 20 20 N 1.31507 * 120.00285 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99701 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46793 * 120.00098 * 21 19 17 24 24 H 1.48504 * 109.46881 * 239.99500 * 21 19 17 25 25 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46626 * 299.99648 * 1 2 3 27 27 H 1.08993 * 109.47020 * 59.99741 * 1 2 3 28 28 H 1.09005 * 109.46854 * 239.99704 * 2 1 3 29 29 H 1.09003 * 109.47069 * 120.00284 * 2 1 3 30 30 H 1.09010 * 109.46702 * 60.00225 * 3 2 1 31 31 H 1.08993 * 109.47250 * 300.00118 * 3 2 1 32 32 H 1.09002 * 109.47724 * 300.00136 * 4 3 2 33 33 H 1.08999 * 109.47357 * 60.00256 * 4 3 2 34 34 H 1.08992 * 109.46852 * 307.31995 * 5 4 3 35 35 H 1.08997 * 109.46719 * 67.31831 * 5 4 3 36 36 H 1.09008 * 110.71488 * 259.97462 * 8 6 5 37 37 H 1.08993 * 110.72502 * 23.06514 * 8 6 5 38 38 H 1.09002 * 111.00515 * 82.56762 * 9 8 6 39 39 H 1.08997 * 111.00130 * 206.42529 * 9 8 6 40 40 H 1.08997 * 110.36548 * 155.85281 * 10 9 8 41 41 H 1.09003 * 110.36536 * 278.17106 * 10 9 8 42 42 H 1.08994 * 109.46703 * 306.06815 * 16 14 12 43 43 H 1.08998 * 109.46505 * 66.06635 * 16 14 12 44 44 H 1.09002 * 109.46840 * 186.06529 * 16 14 12 45 45 H 0.96995 * 120.00640 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.5991 2.8888 -0.1818 7 1 5.8626 2.3696 -1.1033 8 6 6.1180 4.3413 -0.2310 9 6 7.4545 4.2596 0.5530 10 6 7.1121 3.2136 1.6431 11 7 6.2429 2.2339 0.9663 12 6 6.0670 0.9506 1.3388 13 8 5.4430 0.1926 0.6269 14 6 6.6460 0.4576 2.6399 15 1 6.4911 1.2088 3.4143 16 6 8.1450 0.2042 2.4676 17 6 5.9626 -0.8246 3.0399 18 1 5.1863 -1.2406 2.4148 19 6 6.3275 -1.4660 4.2046 20 7 7.2724 -0.9592 4.9661 21 14 5.4808 -3.0557 4.7000 22 1 4.4618 -3.4124 3.6805 23 1 6.4873 -4.1433 4.7963 24 1 4.8200 -2.8748 6.0176 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9287 0.8908 33 1 3.9337 0.9285 -0.8891 34 1 3.6142 3.4353 -0.8160 35 1 3.8272 3.3592 0.9495 36 1 6.2933 4.6535 -1.2606 37 1 5.4194 5.0174 0.2618 38 1 8.2623 3.9060 -0.0878 39 1 7.7048 5.2218 0.9997 40 1 8.0201 2.7301 2.0033 41 1 6.5800 3.6864 2.4686 42 1 8.3056 -0.4647 1.6223 43 1 8.6546 1.1502 2.2843 44 1 8.5426 -0.2531 3.3737 45 1 7.5294 -1.4106 5.7852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597404391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:22 Heat of formation + Delta-G solvation = -52.429337 kcal Electronic energy + Delta-G solvation = -21842.586259 eV Core-core repulsion = 18859.442168 eV Total energy + Delta-G solvation = -2983.144092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81726 -36.86977 -35.66952 -33.79470 -32.31883 -31.25271 -29.94264 -28.68498 -25.42890 -25.12069 -23.52084 -22.06337 -21.18582 -20.42701 -20.27520 -18.19586 -16.42536 -16.18326 -15.83249 -15.25584 -14.77757 -14.11748 -13.87557 -13.51808 -13.40728 -13.22854 -12.93735 -12.79443 -12.56541 -12.26537 -12.01879 -11.66442 -11.53275 -11.37584 -11.17933 -11.00056 -10.92628 -10.73747 -10.65355 -10.47687 -10.45299 -10.33175 -10.22205 -9.95367 -9.86816 -9.53036 -8.94361 -8.52941 -8.23314 -7.72455 -6.01354 -4.04698 3.32724 3.40385 3.47816 3.72360 3.76897 4.48050 4.74967 4.76126 5.00836 5.18657 5.27744 5.31801 5.39337 5.45465 5.56798 5.61501 5.67950 5.78479 5.82252 5.88355 5.95641 5.99598 6.05235 6.09990 6.12210 6.16484 6.29510 6.35945 6.42851 6.46915 6.51217 6.65475 6.69466 6.89400 6.92357 7.00884 7.06129 7.30230 7.52209 7.80138 8.03881 8.21187 8.47935 9.02851 9.29301 9.60562 11.05895 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.008088 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.270190 B = 3460.915823 C = 5541.034044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.133 4.133 5 C -0.121 4.121 6 C 0.134 3.866 7 H 0.066 0.934 8 C -0.128 4.128 9 C -0.133 4.133 10 C 0.101 3.899 11 N -0.626 5.626 12 C 0.529 3.471 13 O -0.525 6.525 14 C 0.035 3.965 15 H 0.045 0.955 16 C -0.133 4.133 17 C -0.496 4.496 18 H 0.072 0.928 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.015 0.985 44 H 0.095 0.905 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 10.729 -8.307 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.170 4.170 5 C -0.160 4.160 6 C 0.031 3.969 7 H 0.084 0.916 8 C -0.166 4.166 9 C -0.171 4.171 10 C -0.023 4.023 11 N -0.363 5.363 12 C 0.322 3.678 13 O -0.401 6.401 14 C 0.014 3.986 15 H 0.063 0.937 16 C -0.191 4.191 17 C -0.535 4.535 18 H 0.090 0.910 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.113 0.887 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.833 10.162 -8.498 13.790 hybrid contribution -0.388 -0.672 0.321 0.840 sum -4.221 9.490 -8.177 13.218 Atomic orbital electron populations 1.21783 0.96748 1.01070 1.01130 1.21491 0.94681 0.97454 1.02526 1.21660 0.97349 0.96156 1.00325 1.22398 0.92982 0.95461 1.06153 1.22000 0.94538 0.98460 1.00992 1.21512 0.92709 0.92122 0.90604 0.91620 1.22681 0.97136 0.95996 1.00762 1.22775 0.97392 0.99158 0.97819 1.22297 0.95095 0.89926 0.94961 1.48805 1.47026 1.10807 1.29669 1.21606 0.78613 0.78659 0.88912 1.90516 1.40013 1.54441 1.55170 1.18826 0.93903 0.97763 0.88116 0.93747 1.21772 0.96436 0.97908 1.03000 1.21162 1.19813 1.06334 1.06182 0.90971 1.24931 0.95223 0.97812 0.96242 1.69869 1.30024 1.39719 1.13947 0.86448 0.79578 0.83255 0.78300 1.19548 1.21040 1.21101 0.93162 0.93059 0.93344 0.92344 0.91529 0.93005 0.93537 0.87375 0.92129 0.92468 0.92380 0.90829 0.90823 0.90935 0.90383 0.89922 0.92075 0.95242 0.96617 0.88668 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.12 -1.80 5.21 -26.74 -0.14 -1.94 16 4 C -0.13 -2.37 3.45 -26.73 -0.09 -2.46 16 5 C -0.12 -1.84 4.76 -26.73 -0.13 -1.97 16 6 C 0.13 2.06 3.12 -66.95 -0.21 1.85 16 7 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.13 -1.45 6.48 -24.90 -0.16 -1.61 16 9 C -0.13 -1.51 7.09 -24.58 -0.17 -1.68 16 10 C 0.10 1.51 6.45 -2.53 -0.02 1.49 16 11 N -0.63 -11.39 3.06 -163.02 -0.50 -11.89 16 12 C 0.53 12.03 5.91 -10.99 -0.06 11.96 16 13 O -0.52 -13.03 11.38 5.56 0.06 -12.97 16 14 C 0.03 0.87 2.00 -92.92 -0.19 0.69 16 15 H 0.04 1.15 7.90 -51.93 -0.41 0.74 16 16 C -0.13 -3.15 8.91 37.16 0.33 -2.82 16 17 C -0.50 -13.99 8.35 -34.44 -0.29 -14.28 16 18 H 0.07 2.13 6.90 -52.48 -0.36 1.77 16 19 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 20 N -0.90 -25.19 11.29 55.43 0.63 -24.56 16 21 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 2.38 4.59 -54.00 -0.25 2.13 16 33 H 0.06 1.16 7.64 -51.93 -0.40 0.76 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.30 5.49 -51.93 -0.29 1.02 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.01 0.31 5.76 -51.93 -0.30 0.01 16 44 H 0.09 2.47 5.93 -51.93 -0.31 2.16 16 45 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -29.53 341.95 -8.88 -38.41 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.19 Total: 1.90 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.01 Total: -12.85 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.13 Total: -36.45 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.53 -8.88 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.021 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds