Wall clock time and date at job start Mon Mar 30 2020 07:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.52993 * 109.47234 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47322 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47043 * 187.31882 * 5 4 3 7 7 H 1.08997 * 109.87370 * 57.05785 * 6 5 4 8 8 C 1.54324 * 109.87836 * 178.07459 * 6 5 4 9 9 C 1.55158 * 102.94300 * 141.61336 * 8 6 5 10 10 C 1.54909 * 101.57831 * 324.49446 * 9 8 6 11 11 N 1.47021 * 109.88477 * 295.87923 * 6 5 4 12 12 C 1.34777 * 125.64667 * 61.62072 * 11 6 5 13 13 O 1.21278 * 120.00194 * 8.07632 * 12 11 6 14 14 C 1.50698 * 119.99860 * 188.07278 * 12 11 6 15 15 H 1.08999 * 109.47381 * 41.86955 * 14 12 11 16 16 C 1.53005 * 109.47367 * 281.86853 * 14 12 11 17 17 C 1.50700 * 109.47192 * 161.87023 * 14 12 11 18 18 H 1.08003 * 120.00161 * 359.97438 * 17 14 12 19 19 C 1.37878 * 120.00177 * 180.02562 * 17 14 12 20 20 N 1.31507 * 120.00285 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99701 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47391 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46793 * 120.00098 * 21 19 17 24 24 H 1.48504 * 109.46881 * 239.99500 * 21 19 17 25 25 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46626 * 299.99648 * 1 2 3 27 27 H 1.08993 * 109.47020 * 59.99741 * 1 2 3 28 28 H 1.09005 * 109.46854 * 239.99704 * 2 1 3 29 29 H 1.09003 * 109.47069 * 120.00284 * 2 1 3 30 30 H 1.09010 * 109.46702 * 60.00225 * 3 2 1 31 31 H 1.08993 * 109.47250 * 300.00118 * 3 2 1 32 32 H 1.09002 * 109.47724 * 300.00136 * 4 3 2 33 33 H 1.08999 * 109.47357 * 60.00256 * 4 3 2 34 34 H 1.08992 * 109.46852 * 307.31995 * 5 4 3 35 35 H 1.08997 * 109.46719 * 67.31831 * 5 4 3 36 36 H 1.09008 * 110.71488 * 259.97462 * 8 6 5 37 37 H 1.08993 * 110.72502 * 23.06514 * 8 6 5 38 38 H 1.09002 * 111.00515 * 82.56762 * 9 8 6 39 39 H 1.08997 * 111.00130 * 206.42529 * 9 8 6 40 40 H 1.08997 * 110.36548 * 155.85281 * 10 9 8 41 41 H 1.09003 * 110.36536 * 278.17106 * 10 9 8 42 42 H 1.08994 * 109.46703 * 306.06815 * 16 14 12 43 43 H 1.08998 * 109.46505 * 66.06635 * 16 14 12 44 44 H 1.09002 * 109.46840 * 186.06529 * 16 14 12 45 45 H 0.96995 * 120.00640 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.5991 2.8888 -0.1818 7 1 5.8626 2.3696 -1.1033 8 6 6.1180 4.3413 -0.2310 9 6 7.4545 4.2596 0.5530 10 6 7.1121 3.2136 1.6431 11 7 6.2429 2.2339 0.9663 12 6 6.0670 0.9506 1.3388 13 8 5.4430 0.1926 0.6269 14 6 6.6460 0.4576 2.6399 15 1 6.4911 1.2088 3.4143 16 6 8.1450 0.2042 2.4676 17 6 5.9626 -0.8246 3.0399 18 1 5.1863 -1.2406 2.4148 19 6 6.3275 -1.4660 4.2046 20 7 7.2724 -0.9592 4.9661 21 14 5.4808 -3.0557 4.7000 22 1 4.4618 -3.4124 3.6805 23 1 6.4873 -4.1433 4.7963 24 1 4.8200 -2.8748 6.0176 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9287 0.8908 33 1 3.9337 0.9285 -0.8891 34 1 3.6142 3.4353 -0.8160 35 1 3.8272 3.3592 0.9495 36 1 6.2933 4.6535 -1.2606 37 1 5.4194 5.0174 0.2618 38 1 8.2623 3.9060 -0.0878 39 1 7.7048 5.2218 0.9997 40 1 8.0201 2.7301 2.0033 41 1 6.5800 3.6864 2.4686 42 1 8.3056 -0.4647 1.6223 43 1 8.6546 1.1502 2.2843 44 1 8.5426 -0.2531 3.3737 45 1 7.5294 -1.4106 5.7852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597404391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:22 Heat of formation + Delta-G solvation = -68.158443 kcal Electronic energy + Delta-G solvation = -21843.268325 eV Core-core repulsion = 18859.442168 eV Total energy + Delta-G solvation = -2983.826157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30474 -38.38213 -36.97143 -35.77545 -33.70921 -32.74510 -31.66943 -29.88128 -27.28685 -26.53422 -25.13433 -23.51704 -22.32475 -21.86891 -21.57681 -19.67788 -18.31254 -17.65688 -17.61171 -16.78314 -16.42544 -15.66714 -15.36547 -14.88314 -14.67158 -14.59899 -14.49794 -14.15645 -13.81719 -13.60151 -13.47380 -13.32417 -12.99303 -12.69870 -12.66309 -12.56696 -12.54702 -12.34564 -12.22280 -12.04774 -11.87846 -11.78688 -11.57675 -11.52885 -11.10184 -11.02152 -10.98545 -10.57779 -10.09694 -9.22615 -8.16353 -6.26700 1.36016 1.38037 1.51217 1.98175 2.27704 2.47056 3.12732 3.63266 3.72567 3.91343 4.03902 4.12242 4.20424 4.26192 4.37198 4.43224 4.51285 4.53055 4.66482 4.71078 4.78580 4.79212 4.85615 4.89180 4.98807 4.99166 5.02667 5.07036 5.13971 5.16072 5.18753 5.24033 5.26966 5.39684 5.42022 5.44023 5.53578 5.66968 5.75384 5.82596 5.97647 6.22372 6.73970 6.85846 7.39653 7.59463 8.89588 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.008088 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.270190 B = 3460.915823 C = 5541.034044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.125 3.875 7 H 0.053 0.947 8 C -0.115 4.115 9 C -0.120 4.120 10 C 0.088 3.912 11 N -0.624 5.624 12 C 0.525 3.475 13 O -0.557 6.557 14 C 0.034 3.966 15 H 0.030 0.970 16 C -0.120 4.120 17 C -0.522 4.522 18 H 0.046 0.954 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.952 3.048 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 13.109 -9.173 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.148 4.148 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.022 3.978 7 H 0.071 0.929 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.034 4.034 11 N -0.359 5.359 12 C 0.317 3.683 13 O -0.436 6.436 14 C 0.013 3.987 15 H 0.047 0.953 16 C -0.178 4.178 17 C -0.560 4.560 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.259 12.590 -9.359 16.255 hybrid contribution -0.236 -1.398 0.592 1.536 sum -4.495 11.192 -8.768 14.911 Atomic orbital electron populations 1.21728 0.94101 1.01907 1.02303 1.21498 0.97033 0.97379 1.00551 1.21612 0.95447 0.96163 1.01612 1.22165 0.94808 0.96807 1.02760 1.21967 0.94603 0.96624 1.02172 1.21811 0.92857 0.94516 0.88660 0.92922 1.22687 0.97036 0.92814 1.02696 1.22771 0.97491 0.99135 0.96386 1.22578 0.94069 0.90186 0.96583 1.48706 1.46929 1.09803 1.30487 1.21042 0.78686 0.80382 0.88188 1.90515 1.41282 1.56032 1.55777 1.18692 0.94580 0.96172 0.89271 0.95253 1.21583 0.95863 0.99129 1.01229 1.21283 1.20050 1.08133 1.06575 0.93585 1.25568 0.95776 1.00473 0.96064 1.69944 1.30373 1.40642 1.14108 0.85601 0.78646 0.80055 0.77964 1.20513 1.19941 1.19819 0.92599 0.92569 0.91385 0.93031 0.94920 0.92707 0.90891 0.91959 0.94318 0.89203 0.92462 0.88117 0.89149 0.90564 0.87094 0.91079 0.91577 0.96374 0.93326 0.90921 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.02 5.93 30.59 0.18 -3.84 16 3 C -0.11 -3.35 5.21 30.59 0.16 -3.19 16 4 C -0.13 -4.69 3.45 30.59 0.11 -4.58 16 5 C -0.12 -3.33 4.76 30.60 0.15 -3.18 16 6 C 0.12 3.62 3.12 45.34 0.14 3.76 16 7 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 8 C -0.11 -2.13 6.48 31.78 0.21 -1.92 16 9 C -0.12 -2.26 7.09 31.99 0.23 -2.04 16 10 C 0.09 2.52 6.45 86.86 0.56 3.08 16 11 N -0.62 -22.72 3.06 -788.07 -2.42 -25.13 16 12 C 0.53 24.93 5.91 87.66 0.52 25.44 16 13 O -0.56 -29.41 11.38 -3.02 -0.03 -29.45 16 14 C 0.03 1.78 2.00 -12.29 -0.02 1.75 16 15 H 0.03 1.60 7.90 -2.39 -0.02 1.58 16 16 C -0.12 -5.83 8.91 71.98 0.64 -5.19 16 17 C -0.52 -30.90 8.35 25.60 0.21 -30.69 16 18 H 0.05 2.91 6.90 -2.91 -0.02 2.89 16 19 C 0.02 1.15 5.29 84.66 0.45 1.59 16 20 N -0.91 -52.12 11.29 21.45 0.24 -51.88 16 21 Si 0.95 45.84 29.54 68.60 2.03 47.86 16 22 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.92 4.59 -35.20 -0.16 2.76 16 33 H 0.04 1.54 7.64 -2.39 -0.02 1.52 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 2.17 5.49 -2.39 -0.01 2.16 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 1.98 5.76 -2.39 -0.01 1.96 16 44 H 0.07 3.86 5.93 -2.39 -0.01 3.85 16 45 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -68.12 341.95 4.84 -63.28 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.78 Total: 17.06 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.24 Total: -21.75 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -2.17 Total: -77.01 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.03 Total: -29.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -68.12 4.84 -63.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.874 kcal (2) G-P(sol) polarization free energy of solvation -68.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds