Wall clock time and date at job start Mon Mar 30 2020 07:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 C 1.52998 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47384 * 172.75982 * 5 4 3 7 7 H 1.08997 * 109.99358 * 297.52926 * 6 5 4 8 8 C 1.54332 * 109.99039 * 176.49658 * 6 5 4 9 9 C 1.55154 * 103.01991 * 218.66205 * 8 6 5 10 10 C 1.54907 * 101.58330 * 35.30549 * 9 8 6 11 11 N 1.47012 * 109.88477 * 58.62752 * 6 5 4 12 12 C 1.34785 * 125.64656 * 298.39541 * 11 6 5 13 13 O 1.21276 * 119.99788 * 355.49593 * 12 11 6 14 14 C 1.50696 * 119.99963 * 175.49246 * 12 11 6 15 15 H 1.08999 * 109.47263 * 314.38585 * 14 12 11 16 16 C 1.53005 * 109.46887 * 74.38646 * 14 12 11 17 17 C 1.50697 * 109.47265 * 194.38092 * 14 12 11 18 18 H 1.08001 * 119.99860 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99965 * 179.72299 * 17 14 12 20 20 N 1.31519 * 119.99651 * 180.27843 * 19 17 14 21 21 Si 1.86799 * 120.00077 * 0.28540 * 19 17 14 22 22 H 1.48498 * 109.47230 * 89.99475 * 21 19 17 23 23 H 1.48510 * 109.46732 * 209.99628 * 21 19 17 24 24 H 1.48496 * 109.47048 * 329.99148 * 21 19 17 25 25 H 1.08995 * 109.46876 * 300.00516 * 1 2 3 26 26 H 1.09000 * 109.46686 * 59.99900 * 1 2 3 27 27 H 1.08991 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 239.99859 * 2 1 3 29 29 H 1.09003 * 109.47419 * 119.99558 * 2 1 3 30 30 H 1.08995 * 109.47570 * 59.99909 * 3 2 1 31 31 H 1.09009 * 109.46738 * 299.99698 * 3 2 1 32 32 H 1.09001 * 109.47117 * 59.99859 * 4 3 2 33 33 H 1.08995 * 109.47133 * 300.00103 * 4 3 2 34 34 H 1.09004 * 109.47340 * 52.75652 * 5 4 3 35 35 H 1.09004 * 109.47517 * 292.75744 * 5 4 3 36 36 H 1.08997 * 110.85658 * 100.19352 * 8 6 5 37 37 H 1.09006 * 110.52041 * 336.97126 * 8 6 5 38 38 H 1.09004 * 111.00385 * 277.23229 * 9 8 6 39 39 H 1.09004 * 111.00949 * 153.37952 * 9 8 6 40 40 H 1.08993 * 110.37253 * 204.15553 * 10 9 8 41 41 H 1.09003 * 110.45871 * 81.87307 * 10 9 8 42 42 H 1.09004 * 109.47254 * 54.51864 * 16 14 12 43 43 H 1.08999 * 109.47238 * 174.52141 * 16 14 12 44 44 H 1.09003 * 109.46897 * 294.52019 * 16 14 12 45 45 H 0.97002 * 119.99434 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5992 2.8889 0.1824 7 1 5.8597 2.4555 1.1480 8 6 6.1373 4.3327 0.0958 9 6 7.4688 4.1635 -0.6826 10 6 7.1103 3.0231 -1.6678 11 7 6.2346 2.1208 -0.8981 12 6 6.0437 0.8100 -1.1474 13 8 5.3573 0.1446 -0.4011 14 6 6.6830 0.1714 -2.3533 15 1 6.5374 0.8114 -3.2235 16 6 8.1808 -0.0114 -2.0997 17 6 6.0488 -1.1720 -2.6060 18 1 5.2611 -1.5277 -1.9582 19 6 6.4697 -1.9444 -3.6677 20 7 5.9124 -3.1145 -3.8913 21 14 7.8317 -1.3291 -4.7882 22 1 9.1460 -1.7775 -4.2622 23 1 7.6330 -1.8753 -6.1549 24 1 7.7988 0.1547 -4.8386 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.6145 3.4354 0.8176 35 1 3.8268 3.3595 -0.9481 36 1 6.3210 4.7388 1.0904 37 1 5.4445 4.9661 -0.4585 38 1 8.2763 3.8633 -0.0147 39 1 7.7266 5.0766 -1.2191 40 1 8.0114 2.4981 -1.9846 41 1 6.5793 3.4200 -2.5331 42 1 8.3273 -0.5696 -1.1750 43 1 8.6256 -0.5602 -2.9298 44 1 8.6566 0.9655 -2.0136 45 1 6.2088 -3.6580 -4.6381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597404392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:27 Heat of formation + Delta-G solvation = -36.132151 kcal Electronic energy + Delta-G solvation = -21942.304388 eV Core-core repulsion = 18959.866995 eV Total energy + Delta-G solvation = -2982.437393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01509 -37.01038 -35.66603 -33.90312 -32.31395 -31.48822 -30.56498 -28.75906 -25.49886 -25.09467 -23.74136 -22.24825 -21.21396 -20.44985 -20.28638 -18.20880 -16.79616 -16.48168 -15.86842 -15.26482 -14.88657 -14.35600 -14.03138 -13.58044 -13.41306 -13.35354 -13.07171 -12.86725 -12.63936 -12.35172 -12.29574 -12.08917 -11.73928 -11.54475 -11.37714 -11.14099 -10.99182 -10.92804 -10.68305 -10.55339 -10.44889 -10.28338 -10.25620 -9.88323 -9.65969 -9.49784 -9.07996 -8.56664 -8.46474 -7.82145 -6.03813 -4.03422 3.23981 3.31910 3.36984 3.57580 3.61758 4.39189 4.64961 4.65311 4.92206 5.16828 5.26018 5.30832 5.36437 5.45114 5.49336 5.59533 5.63358 5.67001 5.78363 5.79101 5.84677 5.88241 5.92897 6.01420 6.14550 6.18145 6.19051 6.23095 6.31916 6.36019 6.43532 6.48507 6.52257 6.54594 6.68862 6.74344 6.91662 7.02481 7.19099 7.28063 7.59628 8.18606 8.56257 9.12726 9.15669 9.55728 11.09053 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.007957 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.158872 B = 3518.072077 C = 5360.491252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.122 4.122 6 C 0.135 3.865 7 H 0.067 0.933 8 C -0.128 4.128 9 C -0.133 4.133 10 C 0.097 3.903 11 N -0.626 5.626 12 C 0.533 3.467 13 O -0.508 6.508 14 C 0.001 3.999 15 H 0.044 0.956 16 C -0.145 4.145 17 C -0.502 4.502 18 H 0.092 0.908 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.882 3.118 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.267 1.267 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.035 0.965 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 15.694 6.284 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.164 4.164 5 C -0.161 4.161 6 C 0.032 3.968 7 H 0.086 0.914 8 C -0.166 4.166 9 C -0.171 4.171 10 C -0.027 4.027 11 N -0.363 5.363 12 C 0.325 3.675 13 O -0.382 6.382 14 C -0.021 4.021 15 H 0.062 0.938 16 C -0.202 4.202 17 C -0.541 4.541 18 H 0.110 0.890 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.192 1.192 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.849 15.041 6.558 16.431 hybrid contribution 0.790 0.316 -0.723 1.116 sum -0.059 15.357 5.835 16.428 Atomic orbital electron populations 1.21779 0.96820 1.01117 1.00969 1.21482 0.94589 0.97291 1.02774 1.21689 0.97449 0.96290 1.00159 1.22462 0.92853 0.94907 1.06211 1.22034 0.94333 0.98741 1.00975 1.21535 0.92874 0.90719 0.91703 0.91444 1.22695 0.97002 0.95960 1.00920 1.22768 0.97542 0.98446 0.98352 1.22346 0.94845 0.90955 0.94508 1.48751 1.46924 1.08829 1.31842 1.20841 0.80045 0.79018 0.87578 1.90633 1.36874 1.61623 1.49090 1.19262 0.92911 0.98320 0.91579 0.93808 1.22161 0.97084 0.99135 1.01840 1.20921 1.20977 0.98870 1.13288 0.88967 1.24969 0.96398 0.94743 0.97008 1.69886 1.42345 1.11076 1.30094 0.86939 0.82605 0.79442 0.79738 1.20546 1.22341 1.19234 0.93443 0.93159 0.93085 0.91369 0.92259 0.93595 0.93190 0.87969 0.91355 0.92345 0.92497 0.90646 0.90776 0.90830 0.90328 0.90129 0.91991 0.92519 0.93186 0.94635 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.12 -1.84 5.21 -26.73 -0.14 -1.98 16 4 C -0.13 -2.26 3.29 -26.73 -0.09 -2.35 16 5 C -0.12 -1.78 4.83 -26.73 -0.13 -1.91 16 6 C 0.14 1.95 3.19 -66.95 -0.21 1.73 16 7 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.13 -1.33 6.49 -24.89 -0.16 -1.50 16 9 C -0.13 -1.36 7.09 -24.59 -0.17 -1.53 16 10 C 0.10 1.32 6.50 -2.53 -0.02 1.30 16 11 N -0.63 -10.68 3.06 -163.02 -0.50 -11.18 16 12 C 0.53 11.59 5.82 -10.98 -0.06 11.52 16 13 O -0.51 -12.33 10.85 5.56 0.06 -12.27 16 14 C 0.00 0.02 1.59 -92.92 -0.15 -0.13 16 15 H 0.04 1.01 7.00 -51.93 -0.36 0.65 16 16 C -0.14 -3.06 8.54 37.16 0.32 -2.74 16 17 C -0.50 -14.41 8.94 -34.44 -0.31 -14.72 16 18 H 0.09 2.99 7.09 -52.49 -0.37 2.61 16 19 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 20 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 21 Si 0.88 21.42 24.41 -169.99 -4.15 17.27 16 22 H -0.28 -6.57 6.83 56.52 0.39 -6.18 16 23 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.04 6.52 56.52 0.37 -5.67 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.10 2.23 4.73 -54.10 -0.26 1.97 16 33 H 0.07 1.33 7.18 -51.93 -0.37 0.96 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.12 5.26 -51.93 -0.27 0.84 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.10 3.24 -51.93 -0.17 0.94 16 44 H 0.03 0.61 5.58 -51.93 -0.29 0.32 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -31.36 333.80 -7.82 -39.18 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.02 Total: 2.98 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.01 Total: -14.13 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.27 Total: -38.06 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.06 Total: -12.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.36 -7.82 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.048 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds