Wall clock time and date at job start Mon Mar 30 2020 07:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47314 * 2 1 4 4 C 1.52998 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47384 * 172.75982 * 5 4 3 7 7 H 1.08997 * 109.99358 * 297.52926 * 6 5 4 8 8 C 1.54332 * 109.99039 * 176.49658 * 6 5 4 9 9 C 1.55154 * 103.01991 * 218.66205 * 8 6 5 10 10 C 1.54907 * 101.58330 * 35.30549 * 9 8 6 11 11 N 1.47012 * 109.88477 * 58.62752 * 6 5 4 12 12 C 1.34785 * 125.64656 * 298.39541 * 11 6 5 13 13 O 1.21276 * 119.99788 * 355.49593 * 12 11 6 14 14 C 1.50696 * 119.99963 * 175.49246 * 12 11 6 15 15 H 1.08999 * 109.47263 * 314.38585 * 14 12 11 16 16 C 1.53005 * 109.46887 * 74.38646 * 14 12 11 17 17 C 1.50697 * 109.47265 * 194.38092 * 14 12 11 18 18 H 1.08001 * 119.99860 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99965 * 179.72299 * 17 14 12 20 20 N 1.31519 * 119.99651 * 180.27843 * 19 17 14 21 21 Si 1.86799 * 120.00077 * 0.28540 * 19 17 14 22 22 H 1.48498 * 109.47230 * 89.99475 * 21 19 17 23 23 H 1.48510 * 109.46732 * 209.99628 * 21 19 17 24 24 H 1.48496 * 109.47048 * 329.99148 * 21 19 17 25 25 H 1.08995 * 109.46876 * 300.00516 * 1 2 3 26 26 H 1.09000 * 109.46686 * 59.99900 * 1 2 3 27 27 H 1.08991 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 239.99859 * 2 1 3 29 29 H 1.09003 * 109.47419 * 119.99558 * 2 1 3 30 30 H 1.08995 * 109.47570 * 59.99909 * 3 2 1 31 31 H 1.09009 * 109.46738 * 299.99698 * 3 2 1 32 32 H 1.09001 * 109.47117 * 59.99859 * 4 3 2 33 33 H 1.08995 * 109.47133 * 300.00103 * 4 3 2 34 34 H 1.09004 * 109.47340 * 52.75652 * 5 4 3 35 35 H 1.09004 * 109.47517 * 292.75744 * 5 4 3 36 36 H 1.08997 * 110.85658 * 100.19352 * 8 6 5 37 37 H 1.09006 * 110.52041 * 336.97126 * 8 6 5 38 38 H 1.09004 * 111.00385 * 277.23229 * 9 8 6 39 39 H 1.09004 * 111.00949 * 153.37952 * 9 8 6 40 40 H 1.08993 * 110.37253 * 204.15553 * 10 9 8 41 41 H 1.09003 * 110.45871 * 81.87307 * 10 9 8 42 42 H 1.09004 * 109.47254 * 54.51864 * 16 14 12 43 43 H 1.08999 * 109.47238 * 174.52141 * 16 14 12 44 44 H 1.09003 * 109.46897 * 294.52019 * 16 14 12 45 45 H 0.97002 * 119.99434 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.5992 2.8889 0.1824 7 1 5.8597 2.4555 1.1480 8 6 6.1373 4.3327 0.0958 9 6 7.4688 4.1635 -0.6826 10 6 7.1103 3.0231 -1.6678 11 7 6.2346 2.1208 -0.8981 12 6 6.0437 0.8100 -1.1474 13 8 5.3573 0.1446 -0.4011 14 6 6.6830 0.1714 -2.3533 15 1 6.5374 0.8114 -3.2235 16 6 8.1808 -0.0114 -2.0997 17 6 6.0488 -1.1720 -2.6060 18 1 5.2611 -1.5277 -1.9582 19 6 6.4697 -1.9444 -3.6677 20 7 5.9124 -3.1145 -3.8913 21 14 7.8317 -1.3291 -4.7882 22 1 9.1460 -1.7775 -4.2622 23 1 7.6330 -1.8753 -6.1549 24 1 7.7988 0.1547 -4.8386 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 3.6145 3.4354 0.8176 35 1 3.8268 3.3595 -0.9481 36 1 6.3210 4.7388 1.0904 37 1 5.4445 4.9661 -0.4585 38 1 8.2763 3.8633 -0.0147 39 1 7.7266 5.0766 -1.2191 40 1 8.0114 2.4981 -1.9846 41 1 6.5793 3.4200 -2.5331 42 1 8.3273 -0.5696 -1.1750 43 1 8.6256 -0.5602 -2.9298 44 1 8.6566 0.9655 -2.0136 45 1 6.2088 -3.6580 -4.6381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597404392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:26 Heat of formation + Delta-G solvation = -56.033145 kcal Electronic energy + Delta-G solvation = -21943.167360 eV Core-core repulsion = 18959.866995 eV Total energy + Delta-G solvation = -2983.300365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42679 -38.42056 -37.01142 -35.79071 -33.88228 -33.03587 -32.02530 -29.91123 -27.20638 -26.53520 -25.33606 -23.61425 -22.33336 -21.85040 -21.58313 -19.60453 -18.79092 -17.79156 -17.58473 -16.84820 -16.42626 -15.90248 -15.45932 -14.93911 -14.80766 -14.64109 -14.52670 -14.24932 -14.00287 -13.74844 -13.65035 -13.46398 -13.30355 -12.85827 -12.66966 -12.52368 -12.46601 -12.26112 -12.19236 -11.90307 -11.83610 -11.63540 -11.53938 -11.42757 -11.19649 -11.06047 -11.01777 -10.74403 -10.12855 -9.24293 -8.28062 -6.34892 1.30366 1.36554 1.48022 1.93529 2.25554 2.32798 3.05477 3.61771 3.71551 3.90994 4.01924 4.09240 4.13510 4.22356 4.28468 4.38004 4.42613 4.52242 4.52920 4.60468 4.67896 4.70681 4.77018 4.79348 4.88147 4.89379 4.99828 5.03276 5.05289 5.14094 5.14316 5.18436 5.23441 5.27029 5.39792 5.41446 5.43431 5.50811 5.53807 5.74194 5.80874 6.28683 6.66125 6.86336 7.26643 7.55834 8.89542 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.007957 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.158872 B = 3518.072077 C = 5360.491252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.121 4.121 5 C -0.116 4.116 6 C 0.125 3.875 7 H 0.052 0.948 8 C -0.115 4.115 9 C -0.120 4.120 10 C 0.082 3.918 11 N -0.622 5.622 12 C 0.527 3.473 13 O -0.551 6.551 14 C 0.000 4.000 15 H 0.055 0.945 16 C -0.139 4.139 17 C -0.515 4.515 18 H 0.029 0.971 19 C 0.006 3.994 20 N -0.952 5.952 21 Si 0.956 3.044 22 H -0.262 1.262 23 H -0.298 1.298 24 H -0.232 1.232 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 20.280 6.135 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.158 4.158 5 C -0.154 4.154 6 C 0.022 3.978 7 H 0.071 0.929 8 C -0.153 4.153 9 C -0.158 4.158 10 C -0.040 4.040 11 N -0.358 5.358 12 C 0.317 3.683 13 O -0.429 6.429 14 C -0.022 4.022 15 H 0.073 0.927 16 C -0.196 4.196 17 C -0.553 4.553 18 H 0.047 0.953 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.155 1.155 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.727 19.699 6.426 20.733 hybrid contribution 0.200 -1.164 -0.595 1.323 sum 0.928 18.535 5.831 19.452 Atomic orbital electron populations 1.21720 0.93945 1.01831 1.02420 1.21485 0.97143 0.97642 1.00177 1.21643 0.95832 0.95756 1.01678 1.22184 0.94407 0.96700 1.02539 1.21993 0.94727 0.96286 1.02379 1.21814 0.92810 0.93071 0.90061 0.92937 1.22693 0.97175 0.92649 1.02761 1.22775 0.97338 0.98141 0.97544 1.22716 0.94192 0.91471 0.95626 1.48659 1.46843 1.07658 1.32593 1.20498 0.79920 0.80825 0.87019 1.90644 1.38596 1.63391 1.50249 1.19155 0.94425 0.95555 0.93057 0.92709 1.22053 0.95112 1.01525 1.00885 1.21065 1.19993 1.01732 1.12498 0.95268 1.26005 0.99541 0.94603 0.98856 1.70083 1.44779 1.13090 1.31286 0.85750 0.78821 0.80849 0.76480 1.18777 1.22532 1.15486 0.91196 0.92355 0.92865 0.95471 0.93516 0.90856 0.92444 0.92632 0.94227 0.89404 0.91936 0.88235 0.89173 0.90406 0.86994 0.90182 0.90965 0.93883 0.93674 0.89981 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.13 -4.39 5.93 30.59 0.18 -4.21 16 3 C -0.11 -3.51 5.21 30.59 0.16 -3.35 16 4 C -0.12 -4.50 3.29 30.59 0.10 -4.40 16 5 C -0.12 -3.19 4.83 30.59 0.15 -3.04 16 6 C 0.13 3.38 3.19 45.35 0.14 3.52 16 7 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 8 C -0.12 -1.85 6.49 31.78 0.21 -1.64 16 9 C -0.12 -1.83 7.09 31.98 0.23 -1.60 16 10 C 0.08 1.93 6.50 86.85 0.56 2.50 16 11 N -0.62 -20.58 3.06 -788.06 -2.41 -22.99 16 12 C 0.53 23.70 5.82 87.65 0.51 24.21 16 13 O -0.55 -29.09 10.85 -3.02 -0.03 -29.12 16 14 C 0.00 -0.01 1.59 -12.29 -0.02 -0.03 16 15 H 0.06 2.48 7.00 -2.39 -0.02 2.46 16 16 C -0.14 -5.65 8.54 71.98 0.61 -5.04 16 17 C -0.51 -31.42 8.94 25.60 0.23 -31.19 16 18 H 0.03 2.09 7.09 -2.91 -0.02 2.07 16 19 C 0.01 0.37 5.45 84.65 0.46 0.83 16 20 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 21 Si 0.96 44.14 24.41 68.60 1.67 45.81 16 22 H -0.26 -11.37 6.83 99.48 0.68 -10.69 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.23 -9.31 6.52 99.48 0.65 -8.66 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 2.63 4.73 -36.78 -0.17 2.46 16 33 H 0.04 1.66 7.18 -2.39 -0.02 1.64 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.23 7.82 -2.38 -0.02 1.21 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.89 5.26 -2.39 -0.01 1.87 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.04 1.88 3.24 -2.39 -0.01 1.87 16 44 H 0.08 2.56 5.58 -2.39 -0.01 2.54 16 45 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -77.51 333.80 4.46 -73.05 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.69 Total: 21.59 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 4.24 Total: -26.48 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.12 Total: -84.86 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.03 Total: -29.12 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.81 kcal Total: -77.51 4.46 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597404392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.021 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds