Wall clock time and date at job start Mon Mar 30 2020 07:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 C 1.53001 * 109.46781 * 119.99652 * 2 1 3 5 5 C 1.53002 * 109.46821 * 175.00027 * 4 2 1 6 6 C 1.53001 * 109.47351 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47497 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99508 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.46928 * 120.62932 * 359.97291 * 9 7 6 11 11 C 1.53187 * 108.77625 * 126.41524 * 10 9 7 12 12 C 1.53046 * 109.31363 * 54.63376 * 11 10 9 13 13 C 1.53046 * 109.53579 * 298.63645 * 12 11 10 14 14 H 1.08995 * 109.49499 * 301.40973 * 13 12 11 15 15 C 1.50700 * 109.49623 * 181.31259 * 13 12 11 16 16 H 1.07996 * 120.00534 * 240.00313 * 15 13 12 17 17 C 1.37878 * 119.99817 * 59.99951 * 15 13 12 18 18 N 1.31514 * 120.00036 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00058 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47137 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47414 * 120.00165 * 19 17 15 22 22 H 1.48506 * 109.47166 * 239.99986 * 19 17 15 23 23 C 1.46921 * 120.63131 * 179.97438 * 9 7 6 24 24 H 1.09001 * 109.47350 * 300.00043 * 1 2 3 25 25 H 1.08994 * 109.47091 * 60.00333 * 1 2 3 26 26 H 1.08996 * 109.46969 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47236 * 239.99556 * 2 1 3 28 28 H 1.08998 * 109.47176 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46884 * 299.99721 * 3 2 1 30 30 H 1.09001 * 109.47127 * 59.99820 * 3 2 1 31 31 H 1.08996 * 109.47107 * 55.00632 * 4 2 1 32 32 H 1.08997 * 109.47075 * 294.99704 * 4 2 1 33 33 H 1.09003 * 109.47401 * 60.00187 * 5 4 2 34 34 H 1.08995 * 109.47279 * 300.00440 * 5 4 2 35 35 H 1.09001 * 109.47130 * 60.00090 * 6 5 4 36 36 H 1.09003 * 109.47096 * 300.00170 * 6 5 4 37 37 H 1.09000 * 109.58351 * 246.20638 * 10 9 7 38 38 H 1.09002 * 109.58642 * 6.48295 * 10 9 7 39 39 H 1.09001 * 109.49833 * 294.68424 * 11 10 9 40 40 H 1.08996 * 109.49835 * 174.58430 * 11 10 9 41 41 H 1.08993 * 109.46296 * 178.61734 * 12 11 10 42 42 H 1.09000 * 109.45696 * 58.65290 * 12 11 10 43 43 H 0.97001 * 119.99878 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.58905 * 113.79723 * 23 9 7 45 45 H 1.09008 * 109.58585 * 353.36923 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0749 -1.5516 2.4376 7 6 5.5769 -1.6592 2.3776 8 8 6.1799 -1.2047 1.4285 9 7 6.2499 -2.2614 3.3781 10 6 5.5332 -2.8173 4.5340 11 6 5.9451 -4.2820 4.7118 12 6 7.4695 -4.3701 4.8155 13 6 8.1016 -3.8437 3.5249 14 1 7.7409 -4.4282 2.6785 15 6 9.6013 -3.9608 3.6152 16 1 10.2175 -3.0769 3.5410 17 6 10.1869 -5.1964 3.7926 18 7 9.4367 -6.2728 3.8825 19 14 12.0458 -5.3415 3.9053 20 1 12.6563 -3.9941 3.7752 21 1 12.4179 -5.9295 5.2171 22 1 12.5412 -6.2164 2.8124 23 6 7.7140 -2.3745 3.3335 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 3.9995 0.1676 1.1421 34 1 3.8532 -1.3939 0.3004 35 1 3.6403 -2.5502 2.4841 36 1 3.7865 -0.9882 3.3251 37 1 5.7923 -2.2534 5.4302 38 1 4.4587 -2.7560 4.3618 39 1 5.6047 -4.8623 3.8541 40 1 5.4951 -4.6786 5.6218 41 1 7.7638 -5.4086 4.9666 42 1 7.8114 -3.7695 5.6584 43 1 9.8487 -7.1421 4.0070 44 1 8.1513 -1.7745 4.1315 45 1 8.0784 -2.0234 2.3680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597900317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:22 Heat of formation + Delta-G solvation = -79.222767 kcal Electronic energy + Delta-G solvation = -20809.177707 eV Core-core repulsion = 17824.871765 eV Total energy + Delta-G solvation = -2984.305942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64211 -37.31387 -36.56350 -33.53687 -32.71724 -31.29732 -30.21295 -27.47840 -27.23992 -25.06608 -24.37025 -22.10353 -21.60200 -20.10783 -19.64656 -18.16062 -16.77763 -16.15678 -15.82546 -15.26374 -14.93149 -14.60905 -14.17716 -13.98428 -13.48730 -13.38287 -13.18639 -12.80388 -12.62036 -12.41989 -12.23384 -12.02453 -11.91446 -11.72053 -11.59268 -11.04501 -10.99923 -10.83429 -10.79962 -10.71188 -10.62721 -10.45792 -10.26898 -9.95538 -9.79376 -9.45684 -9.20917 -8.80548 -8.38885 -7.86307 -6.02120 -4.09064 3.11873 3.28601 3.36773 3.41012 3.59888 4.42530 4.59738 4.73389 4.76366 4.96738 5.13742 5.20067 5.27141 5.36230 5.42857 5.49358 5.53500 5.60488 5.64747 5.67211 5.73779 5.76620 5.80630 5.83957 6.02271 6.07293 6.13378 6.15512 6.32970 6.34293 6.41896 6.42808 6.49672 6.67683 6.82612 7.00208 7.17949 7.34218 7.69387 7.92683 8.05869 8.08227 8.38091 8.71165 8.95082 9.55868 11.03433 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.003450 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.043106 B = 8114.201228 C = 8460.513286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.139 4.139 7 C 0.506 3.494 8 O -0.554 6.554 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.135 4.135 12 C -0.113 4.113 13 C 0.040 3.960 14 H 0.029 0.971 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.116 3.884 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 9.151 -1.094 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.179 4.179 7 C 0.294 3.706 8 O -0.433 6.433 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.151 4.151 13 C 0.021 3.979 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.005 4.005 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.157 9.204 -1.561 18.661 hybrid contribution 0.984 -0.322 0.272 1.070 sum -15.174 8.882 -1.289 17.629 Atomic orbital electron populations 1.21845 0.95517 1.01555 1.01507 1.21118 0.95329 0.96544 0.98685 1.21904 1.01692 0.95842 1.01310 1.21676 0.95571 1.00342 0.97649 1.21398 0.94286 1.01389 0.97197 1.21698 0.93038 1.02656 1.00509 1.20618 0.89836 0.77959 0.82174 1.90651 1.70446 1.48965 1.33201 1.48335 1.08904 1.56038 1.20476 1.21733 0.95554 0.95670 0.88417 1.22002 1.00426 0.94176 1.00729 1.21631 0.89907 1.04671 0.98854 1.18966 0.95437 0.89076 0.94465 0.95326 1.21126 0.91072 0.93230 1.49718 0.92441 1.24944 0.98098 0.95801 0.95041 1.69884 1.34650 0.98292 1.49991 0.86522 0.85688 0.78165 0.77557 1.19726 1.21043 1.21025 1.21964 0.76362 1.00484 1.01644 0.92838 0.92930 0.92795 0.91175 0.92045 0.93083 0.92878 0.92001 0.92063 0.91109 0.91305 0.89302 0.89526 0.92056 0.91086 0.92405 0.92499 0.88642 0.94608 0.93046 0.92858 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.10 -0.87 2.92 -90.62 -0.26 -1.13 16 3 C -0.15 -1.32 8.95 37.16 0.33 -0.99 16 4 C -0.11 -1.07 4.68 -26.73 -0.13 -1.20 16 5 C -0.10 -1.27 4.26 -26.73 -0.11 -1.38 16 6 C -0.14 -1.78 4.05 -27.88 -0.11 -1.89 16 7 C 0.51 9.16 7.70 -10.99 -0.08 9.08 16 8 O -0.55 -12.06 15.40 5.55 0.09 -11.98 16 9 N -0.61 -11.30 2.97 -172.79 -0.51 -11.82 16 10 C 0.11 1.68 6.34 -3.71 -0.02 1.66 16 11 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 12 C -0.11 -2.53 4.96 -26.68 -0.13 -2.66 16 13 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.06 11.31 55.43 0.63 -24.44 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.57 5.65 -3.73 -0.02 2.55 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 29 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 34 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 35 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 36 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 2.43 6.04 -51.93 -0.31 2.12 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.86 7.01 -51.92 -0.36 1.49 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -29.93 347.28 -8.91 -38.83 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.36 Total: -0.83 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.96 Total: -11.19 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.11 Total: -36.25 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.93 -8.91 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.388 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds