Wall clock time and date at job start Mon Mar 30 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 C 1.53000 * 109.46911 * 240.00192 * 2 1 3 5 5 C 1.52996 * 109.46969 * 119.99930 * 2 1 3 6 6 C 1.52997 * 109.47131 * 60.00062 * 5 2 1 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.47069 * 136.05284 * 359.63697 * 11 9 8 13 13 C 1.53758 * 87.88391 * 152.95561 * 12 11 9 14 14 C 1.50709 * 114.26562 * 139.78735 * 13 12 11 15 15 H 1.07996 * 120.00245 * 266.47753 * 14 13 12 16 16 C 1.37875 * 119.99790 * 86.47657 * 14 13 12 17 17 N 1.31513 * 120.00274 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99934 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47300 * 90.00273 * 18 16 14 20 20 H 1.48505 * 109.46924 * 209.99819 * 18 16 14 21 21 H 1.48500 * 109.47064 * 329.99954 * 18 16 14 22 22 C 1.47059 * 136.05949 * 179.97438 * 11 9 8 23 23 H 1.09004 * 109.46930 * 300.00065 * 1 2 3 24 24 H 1.09002 * 109.47067 * 59.99982 * 1 2 3 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47076 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99965 * 3 2 1 28 28 H 1.09001 * 109.47502 * 59.99678 * 3 2 1 29 29 H 1.09004 * 109.46724 * 299.99550 * 4 2 1 30 30 H 1.08992 * 109.47132 * 59.99556 * 4 2 1 31 31 H 1.08992 * 109.47098 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47452 * 300.00062 * 5 2 1 33 33 H 1.09001 * 109.46997 * 179.97438 * 5 2 1 34 34 H 1.09001 * 109.47502 * 60.00153 * 6 5 2 35 35 H 1.09001 * 109.47289 * 299.99950 * 6 5 2 36 36 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 37 37 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 38 38 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 40 40 H 1.08995 * 113.46811 * 267.68445 * 12 11 9 41 41 H 1.09000 * 113.46782 * 38.13190 * 12 11 9 42 42 H 1.08994 * 114.40031 * 272.67293 * 13 12 11 43 43 H 0.97001 * 119.99974 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.46879 * 321.87522 * 22 11 9 45 45 H 1.09010 * 113.46500 * 92.25198 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2492 7 6 2.0405 -2.8852 2.4982 8 6 1.5310 -4.3278 2.4979 9 6 2.0343 -5.0385 3.7277 10 8 2.7315 -4.4491 4.5261 11 7 1.7089 -6.3290 3.9409 12 6 0.9121 -7.3493 3.2431 13 6 1.8038 -8.4146 3.9021 14 6 1.0609 -9.6371 4.3763 15 1 0.7113 -9.6946 5.3965 16 6 0.8276 -10.6821 3.5076 17 7 0.1797 -11.7491 3.9215 18 14 1.4329 -10.5828 1.7432 19 1 2.8047 -11.1450 1.6581 20 1 0.5238 -11.3607 0.8635 21 1 1.4514 -9.1640 1.3052 22 6 1.9895 -7.3346 4.9767 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7216 -1.2491 32 1 1.6767 -0.2074 2.1392 33 1 3.1300 -0.7216 1.2490 34 1 1.8933 -2.6776 0.3593 35 1 0.4400 -2.1637 1.2492 36 1 3.1305 -2.8852 2.4977 37 1 1.6775 -2.3715 3.3883 38 1 0.4410 -4.3282 2.4981 39 1 1.8943 -4.8413 1.6076 40 1 -0.1264 -7.3888 3.5719 41 1 1.0102 -7.3096 2.1583 42 1 2.7102 -8.6506 3.3446 43 1 0.0153 -12.4841 3.3102 44 1 3.0052 -7.2824 5.3685 45 1 1.2356 -7.3695 5.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598025709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:45 Heat of formation + Delta-G solvation = -40.656178 kcal Electronic energy + Delta-G solvation = -20218.528786 eV Core-core repulsion = 17235.895216 eV Total energy + Delta-G solvation = -2982.633569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67170 -38.47483 -37.34313 -34.20699 -32.66365 -30.34510 -28.95547 -27.55073 -27.53087 -25.77616 -25.09161 -23.93487 -21.26365 -20.04811 -18.85241 -18.17632 -17.20030 -16.43131 -15.94206 -15.27650 -15.03381 -14.96390 -14.54599 -14.25465 -14.06573 -13.61151 -13.02447 -12.88058 -12.70878 -12.41394 -12.38325 -12.09763 -11.93557 -11.84309 -11.73157 -11.61334 -11.40663 -11.33476 -10.86527 -10.85580 -10.71199 -10.60820 -10.50226 -10.43310 -10.11223 -9.82147 -9.36448 -9.11006 -8.67826 -8.03184 -6.22703 -4.25411 3.08612 3.19386 3.28192 3.28810 3.47789 4.28953 4.44164 4.57154 4.57371 4.87195 4.94816 5.00726 5.01829 5.24448 5.28452 5.33399 5.43101 5.44205 5.52839 5.55006 5.65303 5.69405 5.70804 5.72484 5.75816 5.79155 5.83791 5.95660 5.97199 6.06267 6.09435 6.13877 6.19395 6.24611 6.31408 6.34058 6.39113 6.41752 6.56460 7.13048 7.53201 8.31611 8.41627 8.65916 8.81104 9.38301 10.89316 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.003239 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.568987 B = 8642.482301 C = 9262.536120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.134 4.134 9 C 0.530 3.470 10 O -0.563 6.563 11 N -0.647 5.647 12 C 0.085 3.915 13 C -0.007 4.007 14 C -0.513 4.513 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.261 1.261 22 C 0.112 3.888 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.267 0.733 44 H 0.060 0.940 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 20.630 -10.063 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.140 4.140 8 C -0.174 4.174 9 C 0.321 3.679 10 O -0.443 6.443 11 N -0.381 5.381 12 C -0.038 4.038 13 C -0.026 4.026 14 C -0.551 4.551 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.185 1.185 22 C -0.010 4.010 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.299 20.974 -9.737 23.161 hybrid contribution 0.108 -0.149 -0.992 1.009 sum 1.407 20.825 -10.729 23.468 Atomic orbital electron populations 1.21938 0.94707 1.02053 1.01424 1.20565 0.95683 0.95277 0.95636 1.21873 1.00916 0.95561 1.01519 1.21936 1.00935 1.00554 0.96711 1.21633 1.00621 0.95337 0.96976 1.21752 1.00936 0.95300 0.98092 1.21332 1.01406 0.93180 0.98053 1.21595 1.02277 0.96640 0.96852 1.20235 0.80543 0.79544 0.87619 1.90637 1.40080 1.65153 1.48471 1.50019 1.50991 1.09217 1.27886 1.23958 0.97403 0.85451 0.96996 1.20791 0.95681 0.92652 0.93509 1.20777 1.36037 0.98604 0.99647 0.90236 1.25019 0.94228 0.94821 0.98665 1.69894 1.40217 1.06641 1.36111 0.86879 0.79069 0.78888 0.84838 1.20159 1.21233 1.18512 1.23083 1.00310 0.84504 0.93072 0.92759 0.93019 0.92163 0.92756 0.92885 0.92750 0.92169 0.93016 0.92758 0.91953 0.91960 0.91720 0.91704 0.91442 0.91451 0.89401 0.89456 0.89750 0.92347 0.92221 0.92352 0.92138 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.12 37.16 0.30 -0.79 16 2 C -0.07 -0.56 0.80 -154.51 -0.12 -0.68 16 3 C -0.14 -1.01 8.47 37.16 0.31 -0.70 16 4 C -0.14 -1.10 8.12 37.16 0.30 -0.80 16 5 C -0.11 -0.96 4.27 -26.73 -0.11 -1.07 16 6 C -0.12 -1.19 4.51 -26.73 -0.12 -1.31 16 7 C -0.10 -1.26 4.50 -26.73 -0.12 -1.38 16 8 C -0.13 -1.85 5.53 -27.89 -0.15 -2.00 16 9 C 0.53 9.88 8.08 -10.98 -0.09 9.79 16 10 O -0.56 -12.18 16.76 5.56 0.09 -12.09 16 11 N -0.65 -12.56 3.69 -185.07 -0.68 -13.24 16 12 C 0.08 1.64 7.44 -8.37 -0.06 1.57 16 13 C -0.01 -0.15 2.96 -91.13 -0.27 -0.42 16 14 C -0.51 -13.24 9.39 -34.44 -0.32 -13.56 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 18 Si 0.88 19.77 27.15 -169.99 -4.62 15.15 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.26 -5.45 5.72 56.52 0.32 -5.12 16 22 C 0.11 2.28 8.17 -8.52 -0.07 2.21 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 35 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 41 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 42 H 0.06 1.31 7.03 -51.93 -0.37 0.94 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -29.25 353.68 -8.19 -37.44 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.46 Total: -0.55 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.63 Total: -7.21 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.09 Total: -38.07 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.62 Total: 15.15 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.25 -8.19 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.214 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds