Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 C 1.53000 * 109.46911 * 240.00192 * 2 1 3 5 5 C 1.52996 * 109.46969 * 119.99930 * 2 1 3 6 6 C 1.52997 * 109.47131 * 60.00062 * 5 2 1 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 2 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.47069 * 136.05284 * 359.63697 * 11 9 8 13 13 C 1.53758 * 87.88391 * 152.95561 * 12 11 9 14 14 C 1.50709 * 114.26562 * 139.78735 * 13 12 11 15 15 H 1.07996 * 120.00245 * 266.47753 * 14 13 12 16 16 C 1.37875 * 119.99790 * 86.47657 * 14 13 12 17 17 N 1.31513 * 120.00274 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99934 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47300 * 90.00273 * 18 16 14 20 20 H 1.48505 * 109.46924 * 209.99819 * 18 16 14 21 21 H 1.48500 * 109.47064 * 329.99954 * 18 16 14 22 22 C 1.47059 * 136.05949 * 179.97438 * 11 9 8 23 23 H 1.09004 * 109.46930 * 300.00065 * 1 2 3 24 24 H 1.09002 * 109.47067 * 59.99982 * 1 2 3 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47076 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99965 * 3 2 1 28 28 H 1.09001 * 109.47502 * 59.99678 * 3 2 1 29 29 H 1.09004 * 109.46724 * 299.99550 * 4 2 1 30 30 H 1.08992 * 109.47132 * 59.99556 * 4 2 1 31 31 H 1.08992 * 109.47098 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47452 * 300.00062 * 5 2 1 33 33 H 1.09001 * 109.46997 * 179.97438 * 5 2 1 34 34 H 1.09001 * 109.47502 * 60.00153 * 6 5 2 35 35 H 1.09001 * 109.47289 * 299.99950 * 6 5 2 36 36 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 37 37 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 38 38 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 39 39 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 40 40 H 1.08995 * 113.46811 * 267.68445 * 12 11 9 41 41 H 1.09000 * 113.46782 * 38.13190 * 12 11 9 42 42 H 1.08994 * 114.40031 * 272.67293 * 13 12 11 43 43 H 0.97001 * 119.99974 * 179.97438 * 17 16 14 44 44 H 1.09000 * 113.46879 * 321.87522 * 22 11 9 45 45 H 1.09010 * 113.46500 * 92.25198 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2492 7 6 2.0405 -2.8852 2.4982 8 6 1.5310 -4.3278 2.4979 9 6 2.0343 -5.0385 3.7277 10 8 2.7315 -4.4491 4.5261 11 7 1.7089 -6.3290 3.9409 12 6 0.9121 -7.3493 3.2431 13 6 1.8038 -8.4146 3.9021 14 6 1.0609 -9.6371 4.3763 15 1 0.7113 -9.6946 5.3965 16 6 0.8276 -10.6821 3.5076 17 7 0.1797 -11.7491 3.9215 18 14 1.4329 -10.5828 1.7432 19 1 2.8047 -11.1450 1.6581 20 1 0.5238 -11.3607 0.8635 21 1 1.4514 -9.1640 1.3052 22 6 1.9895 -7.3346 4.9767 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7216 -1.2491 32 1 1.6767 -0.2074 2.1392 33 1 3.1300 -0.7216 1.2490 34 1 1.8933 -2.6776 0.3593 35 1 0.4400 -2.1637 1.2492 36 1 3.1305 -2.8852 2.4977 37 1 1.6775 -2.3715 3.3883 38 1 0.4410 -4.3282 2.4981 39 1 1.8943 -4.8413 1.6076 40 1 -0.1264 -7.3888 3.5719 41 1 1.0102 -7.3096 2.1583 42 1 2.7102 -8.6506 3.3446 43 1 0.0153 -12.4841 3.3102 44 1 3.0052 -7.2824 5.3685 45 1 1.2356 -7.3695 5.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = -56.166878 kcal Electronic energy + Delta-G solvation = -20219.201380 eV Core-core repulsion = 17235.895216 eV Total energy + Delta-G solvation = -2983.306164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21117 -39.29079 -38.75661 -35.17906 -34.65850 -31.76591 -30.19092 -28.11686 -28.09275 -27.34724 -26.73634 -25.05141 -22.29658 -21.59422 -19.83826 -19.35812 -19.10725 -17.90841 -17.08453 -16.63635 -16.41914 -15.86783 -15.66271 -15.33430 -14.98162 -14.87073 -14.70593 -14.01509 -13.86693 -13.52885 -13.46328 -13.32570 -13.14291 -12.73342 -12.61212 -12.54753 -12.50915 -12.41855 -12.26182 -12.16496 -11.81472 -11.60183 -11.59142 -11.26711 -11.24795 -11.19626 -11.18533 -10.76318 -10.59567 -9.62330 -8.26536 -6.34694 1.43768 1.45791 1.56374 1.63335 2.00451 2.40425 3.05102 3.50548 3.79726 3.94309 3.95118 4.02584 4.10131 4.16268 4.28764 4.44327 4.47154 4.51775 4.61468 4.63722 4.68617 4.78783 4.80645 4.82194 4.83291 4.85218 4.95460 4.96994 4.98656 5.01480 5.12281 5.14816 5.20254 5.28372 5.33638 5.37780 5.43048 5.48028 5.61279 5.61868 5.62794 6.29134 6.71549 6.89755 7.15867 7.33105 8.88985 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.003239 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.568987 B = 8642.482301 C = 9262.536120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.114 4.114 7 C -0.096 4.096 8 C -0.126 4.126 9 C 0.525 3.475 10 O -0.598 6.598 11 N -0.648 5.648 12 C 0.099 3.901 13 C -0.014 4.014 14 C -0.515 4.515 15 H 0.039 0.961 16 C 0.018 3.982 17 N -0.945 5.945 18 Si 0.942 3.058 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.226 1.226 22 C 0.110 3.890 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.268 0.732 44 H 0.060 0.940 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 22.350 -12.792 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.134 4.134 8 C -0.165 4.165 9 C 0.317 3.683 10 O -0.480 6.480 11 N -0.382 5.382 12 C -0.023 4.023 13 C -0.034 4.034 14 C -0.553 4.553 15 H 0.057 0.943 16 C -0.180 4.180 17 N -0.584 5.584 18 Si 0.765 3.235 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.149 1.149 22 C -0.013 4.013 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.342 22.730 -12.468 25.959 hybrid contribution 0.111 -0.670 0.010 0.680 sum 1.453 22.059 -12.458 25.376 Atomic orbital electron populations 1.21939 0.94384 1.02120 1.01672 1.20556 0.95916 0.95458 0.95134 1.21870 1.00886 0.95284 1.01821 1.21936 1.00845 1.00567 0.96775 1.21617 1.00335 0.95106 0.97456 1.21685 1.01386 0.95295 0.96803 1.21288 1.00525 0.92690 0.98945 1.21673 1.03414 0.96643 0.94763 1.21167 0.79597 0.78935 0.88591 1.90625 1.41617 1.65718 1.50085 1.50040 1.51102 1.09665 1.27371 1.23719 0.96729 0.83675 0.98190 1.20721 0.96078 0.91708 0.94862 1.20928 1.35820 1.00481 0.98026 0.94304 1.25911 0.94337 0.94192 1.03569 1.70047 1.42450 1.07856 1.38007 0.85827 0.78041 0.80730 0.78864 1.20156 1.21385 1.14876 1.22977 1.00314 0.84840 0.93155 0.92920 0.92429 0.92155 0.92840 0.92235 0.92823 0.92167 0.92426 0.92934 0.92430 0.92453 0.90836 0.90798 0.92831 0.92829 0.87321 0.87420 0.89596 0.89735 0.91597 0.92327 0.92115 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.12 71.98 0.58 -1.25 16 2 C -0.07 -0.95 0.80 -52.18 -0.04 -0.99 16 3 C -0.14 -1.77 8.47 71.98 0.61 -1.16 16 4 C -0.14 -1.85 8.12 71.98 0.58 -1.26 16 5 C -0.11 -1.71 4.27 30.59 0.13 -1.58 16 6 C -0.11 -1.88 4.51 30.60 0.14 -1.75 16 7 C -0.10 -2.18 4.50 30.60 0.14 -2.05 16 8 C -0.13 -3.05 5.53 29.85 0.16 -2.88 16 9 C 0.52 18.45 8.08 87.65 0.71 19.15 16 10 O -0.60 -25.35 16.76 -3.03 -0.05 -25.40 16 11 N -0.65 -23.77 3.69 -857.83 -3.16 -26.93 16 12 C 0.10 3.53 7.44 83.27 0.62 4.15 16 13 C -0.01 -0.60 2.96 -11.12 -0.03 -0.63 16 14 C -0.51 -26.86 9.39 25.60 0.24 -26.62 16 15 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 16 C 0.02 0.98 5.47 84.65 0.46 1.44 16 17 N -0.94 -55.45 13.96 21.45 0.30 -55.15 16 18 Si 0.94 39.49 27.15 68.60 1.86 41.35 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.23 -8.12 5.72 99.48 0.57 -7.55 16 22 C 0.11 4.39 8.17 83.17 0.68 5.07 16 23 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.76 6.43 -2.39 -0.02 0.75 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 35 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 36 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 37 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.09 3.06 8.10 -2.39 -0.02 3.04 16 41 H 0.08 2.61 7.15 -2.39 -0.02 2.59 16 42 H 0.07 2.73 7.03 -2.39 -0.02 2.71 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.07 3.02 8.10 -2.38 -0.02 3.00 16 Total: -1.00 -63.76 353.68 4.72 -59.04 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.78 Total: 17.44 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.99 Total: -10.35 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -2.86 Total: -82.08 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.86 Total: 41.35 kcal Total: -63.76 4.72 -59.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.873 kcal (2) G-P(sol) polarization free energy of solvation -63.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds