Wall clock time and date at job start Mon Mar 30 2020 07:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47340 * 2 1 4 4 C 1.52990 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47481 * 174.71673 * 4 3 2 6 6 H 1.09005 * 109.47025 * 305.66017 * 5 4 3 7 7 C 1.52997 * 109.47803 * 185.65956 * 5 4 3 8 8 C 1.53001 * 109.47015 * 65.74453 * 7 5 4 9 9 C 1.53006 * 109.47203 * 65.65511 * 5 4 3 10 10 C 1.50698 * 109.47054 * 185.00258 * 9 5 4 11 11 O 1.21278 * 120.00416 * 0.02562 * 10 9 5 12 12 N 1.34777 * 119.99538 * 180.02562 * 10 9 5 13 13 C 1.47065 * 136.06061 * 359.62478 * 12 10 9 14 14 C 1.53751 * 87.88854 * 152.96538 * 13 12 10 15 15 C 1.50700 * 114.26472 * 139.79509 * 14 13 12 16 16 H 1.08009 * 119.99835 * 266.47515 * 15 14 13 17 17 C 1.37872 * 120.00371 * 86.47668 * 15 14 13 18 18 N 1.31516 * 120.00236 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99763 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46782 * 89.99995 * 19 17 15 21 21 H 1.48499 * 109.46903 * 209.99580 * 19 17 15 22 22 H 1.48492 * 109.47009 * 329.99697 * 19 17 15 23 23 C 1.47067 * 136.05725 * 180.02562 * 12 10 9 24 24 H 1.08999 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46701 * 299.99797 * 1 2 3 26 26 H 1.08997 * 109.47191 * 59.99616 * 1 2 3 27 27 H 1.08995 * 109.47363 * 240.00280 * 2 1 3 28 28 H 1.09000 * 109.47782 * 119.99947 * 2 1 3 29 29 H 1.09000 * 109.46640 * 300.00646 * 3 2 1 30 30 H 1.08995 * 109.46664 * 59.99852 * 3 2 1 31 31 H 1.09004 * 109.47277 * 294.71725 * 4 3 2 32 32 H 1.09006 * 109.47248 * 54.71455 * 4 3 2 33 33 H 1.09000 * 109.47740 * 185.74722 * 7 5 4 34 34 H 1.09004 * 109.46789 * 305.74808 * 7 5 4 35 35 H 1.08999 * 109.46865 * 174.67306 * 8 7 5 36 36 H 1.09008 * 109.46719 * 294.66580 * 8 7 5 37 37 H 1.08996 * 109.47488 * 54.66716 * 8 7 5 38 38 H 1.08998 * 109.47086 * 305.00664 * 9 5 4 39 39 H 1.08998 * 109.46806 * 65.00217 * 9 5 4 40 40 H 1.08996 * 113.47076 * 267.70104 * 13 12 10 41 41 H 1.09006 * 113.46712 * 38.13978 * 13 12 10 42 42 H 1.08996 * 114.40068 * 272.67904 * 14 13 12 43 43 H 0.97003 * 119.99644 * 179.97438 * 18 17 15 44 44 H 1.08997 * 113.46541 * 321.86351 * 23 12 10 45 45 H 1.08998 * 113.46872 * 92.23997 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8789 -0.1335 6 1 3.6359 3.3421 -1.0146 7 6 5.6032 2.8683 -0.2760 8 6 5.9873 2.1959 -1.5956 9 6 3.6899 3.6760 1.1130 10 6 4.0834 5.1191 0.9299 11 8 4.6223 5.4752 -0.0965 12 7 3.8364 6.0140 1.9070 13 6 3.2207 5.9812 3.2421 14 6 4.1005 7.1857 3.6150 15 6 3.4015 8.2289 4.4481 16 1 2.9275 9.0734 3.9698 17 6 3.3670 8.1055 5.8209 18 7 2.7573 9.0162 6.5479 19 14 4.1874 6.6453 6.6482 20 1 5.5988 6.9833 6.9626 21 1 3.4653 6.3178 7.9038 22 1 4.1502 5.4743 5.7359 23 6 4.0576 7.4545 2.1042 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9337 1.0127 0.9327 32 1 3.9330 0.8490 -0.8398 33 1 5.9762 3.8924 -0.2680 34 1 6.0420 2.3154 0.5547 35 1 7.0647 2.2722 -1.7421 36 1 5.6982 1.1453 -1.5656 37 1 5.4726 2.6910 -2.4190 38 1 2.6125 3.6095 1.2643 39 1 4.2048 3.2663 1.9820 40 1 2.1547 6.2082 3.2343 41 1 3.4559 5.0788 3.8066 42 1 5.0877 6.9220 3.9944 43 1 2.7328 8.9290 7.5137 44 1 5.0058 7.8075 1.6989 45 1 3.2124 8.0697 1.7956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:13 Heat of formation + Delta-G solvation = -41.476242 kcal Electronic energy + Delta-G solvation = -20739.986168 eV Core-core repulsion = 17757.317038 eV Total energy + Delta-G solvation = -2982.669130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82262 -38.11014 -36.62144 -34.43415 -32.66904 -31.05453 -29.95201 -28.65074 -25.81312 -25.09145 -24.32590 -23.03139 -21.16413 -20.43975 -19.63242 -18.29384 -17.20482 -16.56361 -15.82011 -15.25050 -15.18328 -14.72653 -14.43782 -13.84025 -13.71755 -13.62151 -13.23606 -13.19588 -12.86554 -12.55616 -12.38809 -11.95124 -11.80549 -11.69478 -11.64377 -11.44715 -11.36023 -11.04476 -10.86704 -10.84432 -10.67620 -10.52380 -10.36091 -10.21671 -10.10918 -9.78802 -9.34501 -9.05036 -8.67640 -8.00788 -6.22739 -4.25433 3.09519 3.19357 3.28241 3.28794 3.49250 4.28962 4.55806 4.71734 4.78807 4.90552 4.97122 5.02235 5.08325 5.21144 5.28722 5.44503 5.50401 5.55960 5.58211 5.63589 5.71360 5.73322 5.77771 5.81238 5.85628 5.92782 5.95334 5.99391 6.10418 6.12401 6.18199 6.18602 6.24831 6.27206 6.35161 6.41570 6.48878 6.55540 6.58580 7.13224 7.53341 8.31873 8.42673 8.67722 8.81067 9.38372 10.89323 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.004347 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.490005 B = 6440.087944 C = 7227.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.069 4.069 6 H 0.076 0.924 7 C -0.127 4.127 8 C -0.147 4.147 9 C -0.133 4.133 10 C 0.532 3.468 11 O -0.558 6.558 12 N -0.647 5.647 13 C 0.084 3.916 14 C -0.007 4.007 15 C -0.513 4.513 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.261 1.261 23 C 0.113 3.887 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.267 0.733 44 H 0.060 0.940 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -17.095 -10.651 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.154 4.154 5 C -0.088 4.088 6 H 0.095 0.905 7 C -0.164 4.164 8 C -0.204 4.204 9 C -0.173 4.173 10 C 0.322 3.678 11 O -0.438 6.438 12 N -0.381 5.381 13 C -0.038 4.038 14 C -0.026 4.026 15 C -0.551 4.551 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.009 4.009 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.103 -17.007 -11.161 20.342 hybrid contribution 0.213 -0.732 0.708 1.040 sum 0.317 -17.738 -10.453 20.592 Atomic orbital electron populations 1.21787 0.96055 1.01360 1.01924 1.21533 0.95733 0.97142 1.01753 1.21709 0.95679 0.96502 1.02298 1.21714 0.95139 0.96457 1.02048 1.20958 0.96319 0.94242 0.97239 0.90516 1.21695 0.95024 1.02594 0.97086 1.21756 1.00714 0.99988 0.97941 1.21718 1.02957 0.92311 1.00264 1.20203 0.78841 0.87234 0.81537 1.90609 1.44838 1.80855 1.27528 1.50023 1.59053 1.10934 1.18066 1.23950 0.99575 1.00677 0.79634 1.20790 0.95969 0.93784 0.92070 1.20783 1.35310 1.08098 0.90918 0.90241 1.25010 0.94477 0.95866 0.97307 1.69896 1.42500 1.34320 1.06165 0.86888 0.79936 0.83621 0.79293 1.20143 1.21238 1.18512 1.23079 1.00465 0.80476 0.96910 0.93010 0.92668 0.92801 0.92272 0.92171 0.91988 0.91773 0.92067 0.91534 0.89845 0.92897 0.93244 0.93185 0.92822 0.89200 0.89493 0.89793 0.92393 0.92239 0.92353 0.92153 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.12 -1.17 4.86 -26.73 -0.13 -1.30 16 4 C -0.12 -1.14 4.56 -26.74 -0.12 -1.26 16 5 C -0.07 -0.85 1.49 -90.62 -0.13 -0.99 16 6 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 7 C -0.13 -1.62 5.18 -26.73 -0.14 -1.76 16 8 C -0.15 -1.60 9.56 37.16 0.36 -1.25 16 9 C -0.13 -1.84 4.88 -27.88 -0.14 -1.97 16 10 C 0.53 9.65 7.75 -10.99 -0.09 9.57 16 11 O -0.56 -11.52 14.77 5.56 0.08 -11.44 16 12 N -0.65 -12.38 3.69 -185.09 -0.68 -13.07 16 13 C 0.08 1.63 7.43 -8.39 -0.06 1.56 16 14 C -0.01 -0.14 2.97 -91.12 -0.27 -0.41 16 15 C -0.51 -13.24 9.38 -34.44 -0.32 -13.56 16 16 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 19 Si 0.88 19.78 27.15 -169.99 -4.62 15.16 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -5.46 5.72 56.52 0.32 -5.14 16 23 C 0.11 2.26 8.17 -8.51 -0.07 2.19 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 6.74 -51.93 -0.35 0.28 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.61 6.46 -51.93 -0.34 0.28 16 33 H 0.08 1.33 5.87 -51.93 -0.30 1.02 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.47 6.73 -51.92 -0.35 0.12 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.14 6.48 -51.93 -0.34 0.80 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 41 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 42 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -28.62 351.74 -8.52 -37.14 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.38 Total: 0.99 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.00 Total: -9.25 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.09 Total: -37.90 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.62 Total: 15.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.62 -8.52 -37.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.338 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds