Wall clock time and date at job start Mon Mar 30 2020 07:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47340 * 2 1 4 4 C 1.52990 * 109.47434 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47481 * 174.71673 * 4 3 2 6 6 H 1.09005 * 109.47025 * 305.66017 * 5 4 3 7 7 C 1.52997 * 109.47803 * 185.65956 * 5 4 3 8 8 C 1.53001 * 109.47015 * 65.74453 * 7 5 4 9 9 C 1.53006 * 109.47203 * 65.65511 * 5 4 3 10 10 C 1.50698 * 109.47054 * 185.00258 * 9 5 4 11 11 O 1.21278 * 120.00416 * 0.02562 * 10 9 5 12 12 N 1.34777 * 119.99538 * 180.02562 * 10 9 5 13 13 C 1.47065 * 136.06061 * 359.62478 * 12 10 9 14 14 C 1.53751 * 87.88854 * 152.96538 * 13 12 10 15 15 C 1.50700 * 114.26472 * 139.79509 * 14 13 12 16 16 H 1.08009 * 119.99835 * 266.47515 * 15 14 13 17 17 C 1.37872 * 120.00371 * 86.47668 * 15 14 13 18 18 N 1.31516 * 120.00236 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99763 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46782 * 89.99995 * 19 17 15 21 21 H 1.48499 * 109.46903 * 209.99580 * 19 17 15 22 22 H 1.48492 * 109.47009 * 329.99697 * 19 17 15 23 23 C 1.47067 * 136.05725 * 180.02562 * 12 10 9 24 24 H 1.08999 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46701 * 299.99797 * 1 2 3 26 26 H 1.08997 * 109.47191 * 59.99616 * 1 2 3 27 27 H 1.08995 * 109.47363 * 240.00280 * 2 1 3 28 28 H 1.09000 * 109.47782 * 119.99947 * 2 1 3 29 29 H 1.09000 * 109.46640 * 300.00646 * 3 2 1 30 30 H 1.08995 * 109.46664 * 59.99852 * 3 2 1 31 31 H 1.09004 * 109.47277 * 294.71725 * 4 3 2 32 32 H 1.09006 * 109.47248 * 54.71455 * 4 3 2 33 33 H 1.09000 * 109.47740 * 185.74722 * 7 5 4 34 34 H 1.09004 * 109.46789 * 305.74808 * 7 5 4 35 35 H 1.08999 * 109.46865 * 174.67306 * 8 7 5 36 36 H 1.09008 * 109.46719 * 294.66580 * 8 7 5 37 37 H 1.08996 * 109.47488 * 54.66716 * 8 7 5 38 38 H 1.08998 * 109.47086 * 305.00664 * 9 5 4 39 39 H 1.08998 * 109.46806 * 65.00217 * 9 5 4 40 40 H 1.08996 * 113.47076 * 267.70104 * 13 12 10 41 41 H 1.09006 * 113.46712 * 38.13978 * 13 12 10 42 42 H 1.08996 * 114.40068 * 272.67904 * 14 13 12 43 43 H 0.97003 * 119.99644 * 179.97438 * 18 17 15 44 44 H 1.08997 * 113.46541 * 321.86351 * 23 12 10 45 45 H 1.08998 * 113.46872 * 92.23997 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8789 -0.1335 6 1 3.6359 3.3421 -1.0146 7 6 5.6032 2.8683 -0.2760 8 6 5.9873 2.1959 -1.5956 9 6 3.6899 3.6760 1.1130 10 6 4.0834 5.1191 0.9299 11 8 4.6223 5.4752 -0.0965 12 7 3.8364 6.0140 1.9070 13 6 3.2207 5.9812 3.2421 14 6 4.1005 7.1857 3.6150 15 6 3.4015 8.2289 4.4481 16 1 2.9275 9.0734 3.9698 17 6 3.3670 8.1055 5.8209 18 7 2.7573 9.0162 6.5479 19 14 4.1874 6.6453 6.6482 20 1 5.5988 6.9833 6.9626 21 1 3.4653 6.3178 7.9038 22 1 4.1502 5.4743 5.7359 23 6 4.0576 7.4545 2.1042 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.9337 1.0127 0.9327 32 1 3.9330 0.8490 -0.8398 33 1 5.9762 3.8924 -0.2680 34 1 6.0420 2.3154 0.5547 35 1 7.0647 2.2722 -1.7421 36 1 5.6982 1.1453 -1.5656 37 1 5.4726 2.6910 -2.4190 38 1 2.6125 3.6095 1.2643 39 1 4.2048 3.2663 1.9820 40 1 2.1547 6.2082 3.2343 41 1 3.4559 5.0788 3.8066 42 1 5.0877 6.9220 3.9944 43 1 2.7328 8.9290 7.5137 44 1 5.0058 7.8075 1.6989 45 1 3.2124 8.0697 1.7956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:13 Heat of formation + Delta-G solvation = -56.315765 kcal Electronic energy + Delta-G solvation = -20740.629658 eV Core-core repulsion = 17757.317038 eV Total energy + Delta-G solvation = -2983.312620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29918 -39.43323 -37.79201 -35.22436 -34.66170 -32.22079 -31.19357 -29.81748 -27.29483 -26.73178 -25.47787 -23.88239 -22.04251 -21.80551 -20.73955 -19.78644 -19.12262 -17.99376 -16.99023 -16.76431 -16.11643 -16.07878 -15.69570 -15.20983 -14.96108 -14.74331 -14.56179 -14.09888 -14.01001 -13.67628 -13.59033 -13.45583 -13.25065 -12.92941 -12.61981 -12.53848 -12.43826 -12.25747 -12.12468 -11.82775 -11.82070 -11.61857 -11.58772 -11.42965 -11.23535 -11.18595 -11.10485 -10.70074 -10.50793 -9.57746 -8.27017 -6.35065 1.43019 1.45036 1.55529 1.66755 2.02492 2.39841 3.04823 3.54386 3.79232 3.81418 4.00743 4.09631 4.18513 4.25084 4.30874 4.36693 4.47928 4.52457 4.56908 4.62538 4.64957 4.68755 4.72045 4.80879 4.82048 4.85535 4.91427 4.93209 5.00904 5.08553 5.16790 5.18773 5.19185 5.29976 5.37503 5.38824 5.45093 5.52660 5.58610 5.59739 5.61384 6.28886 6.71230 6.92410 7.20386 7.32937 8.88605 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.004347 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.490005 B = 6440.087944 C = 7227.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.124 4.124 4 C -0.107 4.107 5 C -0.064 4.064 6 H 0.058 0.942 7 C -0.127 4.127 8 C -0.144 4.144 9 C -0.126 4.126 10 C 0.527 3.473 11 O -0.586 6.586 12 N -0.648 5.648 13 C 0.099 3.901 14 C -0.014 4.014 15 C -0.515 4.515 16 H 0.039 0.961 17 C 0.020 3.980 18 N -0.945 5.945 19 Si 0.941 3.059 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.227 1.227 23 C 0.111 3.889 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.268 0.732 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -20.637 -10.735 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.144 4.144 5 C -0.083 4.083 6 H 0.077 0.923 7 C -0.164 4.164 8 C -0.201 4.201 9 C -0.165 4.165 10 C 0.319 3.681 11 O -0.468 6.468 12 N -0.383 5.383 13 C -0.024 4.024 14 C -0.033 4.033 15 C -0.553 4.553 16 H 0.057 0.943 17 C -0.178 4.178 18 N -0.584 5.584 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.150 1.150 23 C -0.011 4.011 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.560 -20.567 -11.277 23.463 hybrid contribution 0.066 0.489 0.632 0.802 sum 0.626 -20.078 -10.645 22.734 Atomic orbital electron populations 1.21801 0.95991 1.01837 1.01659 1.21512 0.95795 0.96333 1.02277 1.21699 0.95377 0.97259 1.01827 1.21643 0.95295 0.94454 1.03020 1.20929 0.95965 0.95627 0.95798 0.92343 1.21655 0.95338 1.00808 0.98600 1.21729 1.00892 1.00880 0.96571 1.21800 1.04048 0.89040 1.01618 1.21053 0.77799 0.88620 0.80634 1.90606 1.45917 1.81609 1.28650 1.50040 1.59362 1.10331 1.18520 1.23694 0.98967 1.00070 0.79638 1.20717 0.96285 0.94175 0.92144 1.20943 1.34861 1.08009 0.91526 0.94287 1.25887 0.95091 0.98904 0.97954 1.70048 1.44830 1.36956 1.06538 0.85845 0.78381 0.80903 0.78464 1.20070 1.21375 1.14999 1.22954 1.00411 0.81755 0.96013 0.92201 0.93020 0.93017 0.91713 0.91660 0.92687 0.92086 0.91005 0.90547 0.93369 0.91708 0.92904 0.91134 0.93678 0.87629 0.87787 0.89742 0.89975 0.91652 0.92320 0.92104 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.12 -1.65 5.93 30.60 0.18 -1.47 16 3 C -0.12 -1.98 4.86 30.59 0.15 -1.83 16 4 C -0.11 -1.74 4.56 30.59 0.14 -1.60 16 5 C -0.06 -1.44 1.49 -10.79 -0.02 -1.46 16 6 H 0.06 1.54 7.95 -2.38 -0.02 1.52 16 7 C -0.13 -3.01 5.18 30.59 0.16 -2.85 16 8 C -0.14 -2.84 9.56 71.98 0.69 -2.16 16 9 C -0.13 -3.12 4.88 29.85 0.15 -2.98 16 10 C 0.53 18.30 7.75 87.66 0.68 18.98 16 11 O -0.59 -23.99 14.77 -3.02 -0.04 -24.03 16 12 N -0.65 -23.77 3.69 -857.88 -3.16 -26.93 16 13 C 0.10 3.56 7.43 83.26 0.62 4.18 16 14 C -0.01 -0.58 2.97 -11.11 -0.03 -0.61 16 15 C -0.52 -27.02 9.38 25.60 0.24 -26.78 16 16 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 17 C 0.02 1.08 5.47 84.65 0.46 1.54 16 18 N -0.94 -55.59 13.96 21.45 0.30 -55.29 16 19 Si 0.94 39.70 27.15 68.60 1.86 41.56 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.23 -8.27 5.72 99.48 0.57 -7.70 16 23 C 0.11 4.46 8.17 83.18 0.68 5.14 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.01 6.74 -2.39 -0.02 1.00 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.12 6.46 -2.38 -0.02 1.11 16 33 H 0.05 1.50 5.87 -2.39 -0.01 1.48 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.10 6.73 -2.38 -0.02 1.09 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 2.33 6.48 -2.39 -0.02 2.32 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 41 H 0.08 2.59 7.15 -2.38 -0.02 2.58 16 42 H 0.07 2.72 7.03 -2.39 -0.02 2.71 16 43 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.07 2.99 8.10 -2.39 -0.02 2.97 16 Total: -1.00 -62.91 351.74 4.55 -58.36 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.79 Total: 19.62 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 4.81 Total: -13.29 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.86 Total: -82.22 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.86 Total: 41.56 kcal Total: -62.91 4.55 -58.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.048 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds