Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 C 1.53004 * 109.49612 * 64.20403 * 3 2 1 5 5 C 1.52996 * 109.47209 * 64.25604 * 4 3 2 6 6 C 1.53037 * 109.50159 * 184.26898 * 3 2 1 7 7 C 1.53043 * 109.54098 * 181.31785 * 6 3 2 8 8 C 1.53190 * 109.31099 * 298.63117 * 7 6 3 9 9 N 1.46931 * 108.77315 * 54.63544 * 8 7 6 10 10 C 1.34785 * 120.62823 * 126.36540 * 9 8 7 11 11 O 1.21283 * 119.99595 * 185.91750 * 10 9 8 12 12 C 1.50696 * 120.00125 * 5.64247 * 10 9 8 13 13 H 1.09001 * 109.47042 * 37.46598 * 12 10 9 14 14 C 1.53003 * 109.46820 * 277.46920 * 12 10 9 15 15 C 1.50692 * 109.47175 * 157.46922 * 12 10 9 16 16 H 1.07995 * 120.00146 * 5.25583 * 15 12 10 17 17 C 1.37881 * 119.99794 * 185.25960 * 15 12 10 18 18 N 1.31510 * 120.00330 * 6.88959 * 17 15 12 19 19 Si 1.86807 * 119.99665 * 186.88954 * 17 15 12 20 20 H 1.48505 * 109.46894 * 94.98659 * 19 17 15 21 21 H 1.48500 * 109.46923 * 214.98389 * 19 17 15 22 22 H 1.48499 * 109.47106 * 334.98307 * 19 17 15 23 23 C 1.46920 * 118.74076 * 306.64407 * 9 8 7 24 24 H 1.08994 * 109.46897 * 304.34659 * 1 2 3 25 25 H 1.08999 * 109.47006 * 64.34994 * 1 2 3 26 26 H 1.09000 * 109.47014 * 184.34574 * 1 2 3 27 27 H 1.09000 * 109.47296 * 240.00183 * 2 1 3 28 28 H 1.09001 * 109.47184 * 119.99945 * 2 1 3 29 29 H 1.09004 * 109.46829 * 184.25697 * 4 3 2 30 30 H 1.09002 * 109.46995 * 304.24929 * 4 3 2 31 31 H 1.09004 * 109.46824 * 304.90770 * 5 4 3 32 32 H 1.08998 * 109.47279 * 64.90443 * 5 4 3 33 33 H 1.08998 * 109.47262 * 184.90933 * 5 4 3 34 34 H 1.08999 * 109.46041 * 61.29085 * 6 3 2 35 35 H 1.09007 * 109.46002 * 301.33661 * 6 3 2 36 36 H 1.09000 * 109.49556 * 178.68409 * 7 6 3 37 37 H 1.09003 * 109.49874 * 58.58784 * 7 6 3 38 38 H 1.08995 * 109.59368 * 294.85277 * 8 7 6 39 39 H 1.08997 * 109.70476 * 174.48959 * 8 7 6 40 40 H 1.08997 * 109.47746 * 53.30674 * 14 12 10 41 41 H 1.09003 * 109.46693 * 173.30469 * 14 12 10 42 42 H 1.08997 * 109.47199 * 293.30164 * 14 12 10 43 43 H 0.96997 * 120.00024 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.58935 * 173.14503 * 23 9 8 45 45 H 1.08999 * 109.58511 * 293.57016 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6184 2.1331 1.2986 5 6 2.2982 1.4469 2.4851 6 6 3.5666 1.4446 -0.1074 7 6 4.0800 2.8860 -0.0744 8 6 3.5102 3.6543 -1.2709 9 7 2.0458 3.5348 -1.2557 10 6 1.2667 4.6339 -1.2954 11 8 0.0645 4.5297 -1.1742 12 6 1.8900 5.9929 -1.4842 13 1 2.7250 5.9161 -2.1807 14 6 2.3957 6.5136 -0.1372 15 6 0.8610 6.9452 -2.0366 16 1 -0.1640 6.6252 -2.1518 17 6 1.2282 8.2249 -2.3950 18 7 2.4964 8.5728 -2.3836 19 14 -0.0759 9.4648 -2.8968 20 1 -0.4587 10.2846 -1.7192 21 1 0.4647 10.3486 -3.9606 22 1 -1.2704 8.7467 -3.4095 23 6 1.4470 2.1948 -1.1900 24 1 -0.3633 0.5798 0.8484 25 1 -0.3633 0.4448 -0.9264 26 1 -0.3633 -1.0247 0.0779 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9160 3.1813 1.2658 30 1 0.5363 2.0661 1.4111 31 1 2.0706 0.3811 2.4675 32 1 3.3768 1.5893 2.4181 33 1 1.9314 1.8814 3.4150 34 1 3.8654 0.9740 -1.0440 35 1 3.9903 0.8890 0.7293 36 1 5.1688 2.8856 -0.1274 37 1 3.7605 3.3649 0.8512 38 1 3.9015 3.2319 -2.1964 39 1 3.7918 4.7049 -1.2010 40 1 3.0492 5.7694 0.3179 41 1 2.9506 7.4392 -0.2907 42 1 1.5476 6.7032 0.5206 43 1 2.7547 9.4730 -2.6361 44 1 0.3679 2.2825 -1.0641 45 1 1.6668 1.6509 -2.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598216187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = -62.863579 kcal Electronic energy + Delta-G solvation = -22350.633444 eV Core-core repulsion = 19367.036890 eV Total energy + Delta-G solvation = -2983.596554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25272 -37.88668 -34.79425 -33.65816 -32.15165 -30.90227 -30.59677 -28.72457 -25.44235 -25.10632 -24.13797 -23.41661 -21.91056 -21.19826 -18.56432 -17.78263 -16.43795 -16.09149 -15.44796 -15.22437 -14.98109 -14.35905 -14.14609 -13.76113 -13.44031 -13.16605 -13.01403 -12.83049 -12.53748 -12.37370 -12.25403 -11.91395 -11.63250 -11.52332 -11.25426 -11.08398 -10.96473 -10.84661 -10.76607 -10.61230 -10.50077 -10.33772 -10.23810 -10.04477 -9.96150 -9.90780 -8.97511 -8.46463 -8.29459 -7.92702 -6.03785 -4.02774 3.34896 3.41088 3.47663 3.73535 3.78989 4.49218 4.64826 4.84090 4.85329 5.14412 5.26527 5.31307 5.32755 5.36153 5.42234 5.45843 5.62575 5.70458 5.73974 5.79351 5.85963 5.93101 5.97072 5.99953 6.03255 6.07433 6.17106 6.21003 6.27925 6.30612 6.37548 6.40268 6.52596 6.63505 6.69531 6.83697 6.95543 7.20148 7.47445 7.69070 7.99147 8.12178 8.44448 9.04466 9.29650 9.61270 11.06711 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.005357 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.434901 B = 5225.585906 C = 5581.196084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.070 4.070 4 C -0.114 4.114 5 C -0.152 4.152 6 C -0.107 4.107 7 C -0.137 4.137 8 C 0.108 3.892 9 N -0.624 5.624 10 C 0.525 3.475 11 O -0.549 6.549 12 C 0.030 3.970 13 H 0.053 0.947 14 C -0.125 4.125 15 C -0.501 4.501 16 H 0.070 0.930 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.120 3.880 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.016 0.984 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.090 0.910 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -15.607 6.041 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.209 4.209 6 C -0.145 4.145 7 C -0.175 4.175 8 C -0.016 4.016 9 N -0.359 5.359 10 C 0.316 3.684 11 O -0.425 6.425 12 C 0.009 3.991 13 H 0.070 0.930 14 C -0.183 4.183 15 C -0.539 4.539 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.004 4.004 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.946 -15.477 6.050 17.080 hybrid contribution -0.483 0.677 -0.307 0.886 sum 3.463 -14.800 5.743 16.249 Atomic orbital electron populations 1.21888 0.95882 1.01119 1.02587 1.21556 0.96045 0.95570 1.01696 1.20849 0.95373 0.94881 0.95984 1.21577 1.00328 1.00125 0.93056 1.21875 1.00711 1.00398 0.97923 1.21591 0.94600 0.96766 1.01501 1.21972 0.99934 0.95907 0.99683 1.21695 0.80364 1.02356 0.97152 1.48291 1.06305 1.05704 1.75602 1.21962 0.86894 0.86574 0.72925 1.90509 1.15680 1.86753 1.49537 1.18859 0.97481 0.87132 0.95616 0.92965 1.21685 0.99198 1.00908 0.96513 1.21097 0.95489 0.96060 1.41283 0.91162 1.24931 0.95389 0.98365 0.95325 1.69936 1.15053 1.19470 1.48972 0.86496 0.81953 0.81021 0.78113 1.20679 1.21339 1.19738 1.21446 0.99587 0.83305 0.96028 0.92238 0.92328 0.93207 0.92211 0.91712 0.91284 0.91928 0.92811 0.92676 0.93280 0.92231 0.91858 0.91290 0.91139 0.92487 0.88447 0.96461 0.90631 0.94438 0.93003 0.89199 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.15 37.16 0.34 -1.36 16 2 C -0.11 -1.15 4.84 -26.73 -0.13 -1.28 16 3 C -0.07 -0.86 0.32 -154.61 -0.05 -0.91 16 4 C -0.11 -1.52 4.25 -26.73 -0.11 -1.63 16 5 C -0.15 -1.63 9.14 37.16 0.34 -1.29 16 6 C -0.11 -1.19 4.20 -26.69 -0.11 -1.30 16 7 C -0.14 -1.69 5.74 -26.61 -0.15 -1.84 16 8 C 0.11 1.66 5.79 -3.71 -0.02 1.64 16 9 N -0.62 -11.41 2.35 -173.03 -0.41 -11.82 16 10 C 0.52 12.24 6.81 -10.98 -0.07 12.17 16 11 O -0.55 -14.52 15.15 5.55 0.08 -14.43 16 12 C 0.03 0.76 1.64 -92.93 -0.15 0.61 16 13 H 0.05 1.35 6.90 -51.93 -0.36 0.99 16 14 C -0.12 -2.90 8.57 37.16 0.32 -2.58 16 15 C -0.50 -14.36 8.29 -34.44 -0.29 -14.65 16 16 H 0.07 2.14 6.95 -52.49 -0.36 1.77 16 17 C 0.06 1.71 5.27 -17.82 -0.09 1.61 16 18 N -0.90 -25.32 12.07 55.43 0.67 -24.65 16 19 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.12 1.87 4.43 -3.94 -0.02 1.86 16 24 H 0.06 0.68 6.26 -51.93 -0.33 0.35 16 25 H 0.06 0.69 6.76 -51.93 -0.35 0.34 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.61 6.26 -51.93 -0.32 0.28 16 29 H 0.07 1.10 6.10 -51.93 -0.32 0.79 16 30 H 0.06 0.89 6.26 -51.93 -0.33 0.57 16 31 H 0.05 0.52 6.24 -51.93 -0.32 0.19 16 32 H 0.05 0.56 6.68 -51.93 -0.35 0.22 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.66 4.76 -51.93 -0.25 1.41 16 40 H 0.02 0.33 6.86 -51.93 -0.36 -0.03 16 41 H 0.07 1.87 6.95 -51.93 -0.36 1.51 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 44 H 0.09 1.60 5.66 -51.93 -0.29 1.30 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -30.50 327.94 -7.42 -37.93 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.49 Total: 0.04 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -0.20 Total: -8.97 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.26 Total: -36.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.50 -7.42 -37.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598216187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.938 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds