Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 C 1.53004 * 109.49612 * 64.20403 * 3 2 1 5 5 C 1.52996 * 109.47209 * 64.25604 * 4 3 2 6 6 C 1.53037 * 109.50159 * 184.26898 * 3 2 1 7 7 C 1.53043 * 109.54098 * 181.31785 * 6 3 2 8 8 C 1.53190 * 109.31099 * 298.63117 * 7 6 3 9 9 N 1.46931 * 108.77315 * 54.63544 * 8 7 6 10 10 C 1.34785 * 120.62823 * 126.36540 * 9 8 7 11 11 O 1.21283 * 119.99595 * 185.91750 * 10 9 8 12 12 C 1.50696 * 120.00125 * 5.64247 * 10 9 8 13 13 H 1.09001 * 109.47042 * 37.46598 * 12 10 9 14 14 C 1.53003 * 109.46820 * 277.46920 * 12 10 9 15 15 C 1.50692 * 109.47175 * 157.46922 * 12 10 9 16 16 H 1.07995 * 120.00146 * 5.25583 * 15 12 10 17 17 C 1.37881 * 119.99794 * 185.25960 * 15 12 10 18 18 N 1.31510 * 120.00330 * 6.88959 * 17 15 12 19 19 Si 1.86807 * 119.99665 * 186.88954 * 17 15 12 20 20 H 1.48505 * 109.46894 * 94.98659 * 19 17 15 21 21 H 1.48500 * 109.46923 * 214.98389 * 19 17 15 22 22 H 1.48499 * 109.47106 * 334.98307 * 19 17 15 23 23 C 1.46920 * 118.74076 * 306.64407 * 9 8 7 24 24 H 1.08994 * 109.46897 * 304.34659 * 1 2 3 25 25 H 1.08999 * 109.47006 * 64.34994 * 1 2 3 26 26 H 1.09000 * 109.47014 * 184.34574 * 1 2 3 27 27 H 1.09000 * 109.47296 * 240.00183 * 2 1 3 28 28 H 1.09001 * 109.47184 * 119.99945 * 2 1 3 29 29 H 1.09004 * 109.46829 * 184.25697 * 4 3 2 30 30 H 1.09002 * 109.46995 * 304.24929 * 4 3 2 31 31 H 1.09004 * 109.46824 * 304.90770 * 5 4 3 32 32 H 1.08998 * 109.47279 * 64.90443 * 5 4 3 33 33 H 1.08998 * 109.47262 * 184.90933 * 5 4 3 34 34 H 1.08999 * 109.46041 * 61.29085 * 6 3 2 35 35 H 1.09007 * 109.46002 * 301.33661 * 6 3 2 36 36 H 1.09000 * 109.49556 * 178.68409 * 7 6 3 37 37 H 1.09003 * 109.49874 * 58.58784 * 7 6 3 38 38 H 1.08995 * 109.59368 * 294.85277 * 8 7 6 39 39 H 1.08997 * 109.70476 * 174.48959 * 8 7 6 40 40 H 1.08997 * 109.47746 * 53.30674 * 14 12 10 41 41 H 1.09003 * 109.46693 * 173.30469 * 14 12 10 42 42 H 1.08997 * 109.47199 * 293.30164 * 14 12 10 43 43 H 0.96997 * 120.00024 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.58935 * 173.14503 * 23 9 8 45 45 H 1.08999 * 109.58511 * 293.57016 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6184 2.1331 1.2986 5 6 2.2982 1.4469 2.4851 6 6 3.5666 1.4446 -0.1074 7 6 4.0800 2.8860 -0.0744 8 6 3.5102 3.6543 -1.2709 9 7 2.0458 3.5348 -1.2557 10 6 1.2667 4.6339 -1.2954 11 8 0.0645 4.5297 -1.1742 12 6 1.8900 5.9929 -1.4842 13 1 2.7250 5.9161 -2.1807 14 6 2.3957 6.5136 -0.1372 15 6 0.8610 6.9452 -2.0366 16 1 -0.1640 6.6252 -2.1518 17 6 1.2282 8.2249 -2.3950 18 7 2.4964 8.5728 -2.3836 19 14 -0.0759 9.4648 -2.8968 20 1 -0.4587 10.2846 -1.7192 21 1 0.4647 10.3486 -3.9606 22 1 -1.2704 8.7467 -3.4095 23 6 1.4470 2.1948 -1.1900 24 1 -0.3633 0.5798 0.8484 25 1 -0.3633 0.4448 -0.9264 26 1 -0.3633 -1.0247 0.0779 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9160 3.1813 1.2658 30 1 0.5363 2.0661 1.4111 31 1 2.0706 0.3811 2.4675 32 1 3.3768 1.5893 2.4181 33 1 1.9314 1.8814 3.4150 34 1 3.8654 0.9740 -1.0440 35 1 3.9903 0.8890 0.7293 36 1 5.1688 2.8856 -0.1274 37 1 3.7605 3.3649 0.8512 38 1 3.9015 3.2319 -2.1964 39 1 3.7918 4.7049 -1.2010 40 1 3.0492 5.7694 0.3179 41 1 2.9506 7.4392 -0.2907 42 1 1.5476 6.7032 0.5206 43 1 2.7547 9.4730 -2.6361 44 1 0.3679 2.2825 -1.0641 45 1 1.6668 1.6509 -2.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598216187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = -79.714103 kcal Electronic energy + Delta-G solvation = -22351.364138 eV Core-core repulsion = 19367.036890 eV Total energy + Delta-G solvation = -2984.327248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58284 -39.43567 -36.19894 -35.66774 -33.28409 -32.66241 -31.82954 -29.88619 -27.25226 -26.76800 -25.20868 -24.54174 -23.61413 -22.27817 -20.12738 -18.88529 -18.42408 -17.75382 -17.03248 -16.55297 -16.25594 -15.96535 -15.64082 -14.92436 -14.75866 -14.56933 -14.40112 -14.16797 -13.88671 -13.69840 -13.46332 -13.21297 -12.92528 -12.91173 -12.77323 -12.63615 -12.55433 -12.32751 -12.19321 -12.10773 -12.02402 -11.86296 -11.56832 -11.27571 -11.09296 -11.04355 -10.95217 -10.56112 -10.21625 -9.40857 -8.20502 -6.26666 1.37956 1.39222 1.51004 1.93349 2.24311 2.46031 3.11835 3.62991 3.83778 3.86837 4.11727 4.15908 4.23332 4.31381 4.40689 4.52738 4.55570 4.62832 4.66976 4.72769 4.74806 4.79060 4.85062 4.91187 4.96711 4.98492 5.00948 5.04543 5.12657 5.15834 5.21328 5.29479 5.34102 5.39732 5.43803 5.46669 5.49136 5.66945 5.70886 5.76620 5.88134 6.16888 6.63641 6.80796 7.37879 7.52991 8.88899 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.005357 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.434901 B = 5225.585906 C = 5581.196084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.063 4.063 4 C -0.112 4.112 5 C -0.144 4.144 6 C -0.103 4.103 7 C -0.130 4.130 8 C 0.099 3.901 9 N -0.614 5.614 10 C 0.521 3.479 11 O -0.593 6.593 12 C 0.030 3.970 13 H 0.043 0.957 14 C -0.108 4.108 15 C -0.531 4.531 16 H 0.042 0.958 17 C 0.024 3.976 18 N -0.910 5.910 19 Si 0.952 3.048 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.280 1.280 23 C 0.115 3.885 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.062 0.938 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -17.540 6.559 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.064 4.064 4 C -0.150 4.150 5 C -0.201 4.201 6 C -0.140 4.140 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.347 5.347 10 C 0.312 3.688 11 O -0.474 6.474 12 C 0.009 3.991 13 H 0.061 0.939 14 C -0.167 4.167 15 C -0.569 4.569 16 H 0.060 0.940 17 C -0.176 4.176 18 N -0.548 5.548 19 Si 0.778 3.222 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.205 1.205 23 C -0.007 4.007 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.808 -17.442 6.572 19.523 hybrid contribution -1.029 1.254 -0.500 1.698 sum 4.778 -16.188 6.072 17.937 Atomic orbital electron populations 1.21884 0.96692 1.01848 1.01137 1.21543 0.95273 0.93966 1.03397 1.20825 0.96603 0.95549 0.93437 1.21528 0.99507 0.98804 0.95168 1.21822 1.00974 1.01021 0.96303 1.21608 0.92913 0.96066 1.03404 1.21947 1.01467 0.96175 0.97233 1.21957 0.78345 1.02155 0.99875 1.48226 1.07465 1.05549 1.73421 1.21598 0.86504 0.87412 0.73265 1.90478 1.17391 1.87453 1.52050 1.18745 0.96315 0.88092 0.95959 0.93917 1.21474 0.98747 1.00940 0.95506 1.21219 0.95079 0.97720 1.42894 0.94004 1.25564 0.97355 0.99563 0.95089 1.69992 1.16035 1.20040 1.48780 0.85633 0.79384 0.78902 0.78284 1.19867 1.19768 1.20509 1.21663 0.98244 0.82175 0.98608 0.93503 0.94096 0.91322 0.90736 0.89630 0.94475 0.93824 0.91021 0.91516 0.93479 0.90758 0.89300 0.88396 0.92284 0.90603 0.90413 0.93198 0.92282 0.96022 0.92492 0.91997 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.15 71.98 0.66 -2.56 16 2 C -0.10 -1.83 4.84 30.59 0.15 -1.68 16 3 C -0.06 -1.43 0.32 -52.25 -0.02 -1.45 16 4 C -0.11 -2.92 4.25 30.59 0.13 -2.79 16 5 C -0.14 -2.72 9.14 71.98 0.66 -2.06 16 6 C -0.10 -1.87 4.20 30.62 0.13 -1.74 16 7 C -0.13 -2.84 5.74 30.67 0.18 -2.66 16 8 C 0.10 2.92 5.79 86.36 0.50 3.42 16 9 N -0.61 -22.65 2.35 -819.74 -1.93 -24.58 16 10 C 0.52 25.35 6.81 87.65 0.60 25.95 16 11 O -0.59 -33.29 15.15 -3.04 -0.05 -33.33 16 12 C 0.03 1.57 1.64 -12.29 -0.02 1.55 16 13 H 0.04 2.29 6.90 -2.39 -0.02 2.27 16 14 C -0.11 -5.18 8.57 71.98 0.62 -4.56 16 15 C -0.53 -31.69 8.29 25.60 0.21 -31.48 16 16 H 0.04 2.69 6.95 -2.91 -0.02 2.67 16 17 C 0.02 1.37 5.27 84.66 0.45 1.82 16 18 N -0.91 -51.88 12.07 21.45 0.26 -51.62 16 19 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 23 C 0.12 3.59 4.43 86.22 0.38 3.97 16 24 H 0.05 1.06 6.26 -2.39 -0.01 1.05 16 25 H 0.04 0.96 6.76 -2.39 -0.02 0.94 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.21 6.26 -2.39 -0.01 1.20 16 29 H 0.04 1.19 6.10 -2.38 -0.01 1.17 16 30 H 0.04 1.27 6.26 -2.39 -0.01 1.26 16 31 H 0.07 1.10 6.24 -2.38 -0.01 1.09 16 32 H 0.07 1.11 6.68 -2.39 -0.02 1.10 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.26 6.55 -2.38 -0.02 1.25 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.45 6.43 -2.39 -0.02 1.43 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.61 4.76 -2.39 -0.01 2.60 16 40 H 0.05 1.99 6.86 -2.39 -0.02 1.97 16 41 H 0.06 2.98 6.95 -2.39 -0.02 2.97 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.06 2.29 5.66 -2.39 -0.01 2.28 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.07 327.94 5.89 -63.18 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.96 Total: 12.87 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.62 Total: -14.28 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.67 Total: -76.20 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.05 Total: -33.33 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.07 5.89 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598216187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.538 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds