Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 C 1.53000 * 109.49532 * 54.77962 * 3 2 1 5 5 C 1.53003 * 109.46904 * 55.87795 * 4 3 2 6 6 C 1.53037 * 109.49598 * 174.84523 * 3 2 1 7 7 C 1.53044 * 109.53737 * 58.58678 * 6 3 2 8 8 C 1.53192 * 109.31208 * 61.36260 * 7 6 3 9 9 N 1.46925 * 108.77757 * 305.36586 * 8 7 6 10 10 C 1.34779 * 120.62734 * 233.62940 * 9 8 7 11 11 O 1.21287 * 119.99525 * 185.12021 * 10 9 8 12 12 C 1.50697 * 120.00276 * 5.12190 * 10 9 8 13 13 H 1.08999 * 109.47192 * 322.93856 * 12 10 9 14 14 C 1.52999 * 109.46885 * 82.93652 * 12 10 9 15 15 C 1.50693 * 109.47145 * 202.93672 * 12 10 9 16 16 H 1.08006 * 120.00014 * 0.02562 * 15 12 10 17 17 C 1.37884 * 120.00278 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00220 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 119.99594 * 359.97438 * 17 15 12 20 20 H 1.48504 * 109.47063 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47156 * 210.00471 * 19 17 15 22 22 H 1.48502 * 109.47372 * 330.00526 * 19 17 15 23 23 C 1.46995 * 118.75493 * 53.60546 * 9 8 7 24 24 H 1.09000 * 109.47000 * 300.86587 * 1 2 3 25 25 H 1.09000 * 109.47295 * 60.87393 * 1 2 3 26 26 H 1.09006 * 109.47084 * 180.87126 * 1 2 3 27 27 H 1.08998 * 109.46620 * 239.99990 * 2 1 3 28 28 H 1.09000 * 109.46920 * 120.00272 * 2 1 3 29 29 H 1.09002 * 109.46450 * 175.87332 * 4 3 2 30 30 H 1.08999 * 109.47177 * 295.87305 * 4 3 2 31 31 H 1.09007 * 109.46619 * 178.11428 * 5 4 3 32 32 H 1.08999 * 109.46998 * 298.10804 * 5 4 3 33 33 H 1.08999 * 109.47611 * 58.11233 * 5 4 3 34 34 H 1.09003 * 109.46242 * 178.60727 * 6 3 2 35 35 H 1.08999 * 109.46125 * 298.56689 * 6 3 2 36 36 H 1.09004 * 109.49943 * 181.31428 * 7 6 3 37 37 H 1.09001 * 109.50172 * 301.37891 * 7 6 3 38 38 H 1.09006 * 109.58435 * 65.15361 * 8 7 6 39 39 H 1.08998 * 109.58825 * 185.57428 * 8 7 6 40 40 H 1.09003 * 109.47345 * 65.85073 * 14 12 10 41 41 H 1.09003 * 109.47393 * 185.84672 * 14 12 10 42 42 H 1.08994 * 109.47700 * 305.84631 * 14 12 10 43 43 H 0.97000 * 119.99598 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.62711 * 186.61930 * 23 9 8 45 45 H 1.09001 * 109.57843 * 66.17108 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4260 2.2012 1.1783 5 6 1.7400 1.4616 2.4803 6 6 3.5649 1.4452 0.1296 7 6 4.1785 0.6578 -1.0304 8 6 3.8046 1.3319 -2.3542 9 7 2.3428 1.4643 -2.4212 10 6 1.6580 0.9878 -3.4797 11 8 0.4645 1.1845 -3.5682 12 6 2.3752 0.2105 -4.5533 13 1 3.3642 0.6399 -4.7135 14 6 2.5174 -1.2491 -4.1173 15 6 1.5850 0.2773 -5.8346 16 1 0.6564 0.8280 -5.8684 17 6 2.0473 -0.3645 -6.9640 18 7 1.3579 -0.3058 -8.0825 19 14 3.6536 -1.3162 -6.9058 20 1 3.3811 -2.7240 -6.5195 21 1 4.2959 -1.2857 -8.2443 22 1 4.5607 -0.6957 -5.9072 23 6 1.6411 2.1258 -1.3118 24 1 -0.3633 0.5272 0.8821 25 1 -0.3634 0.5002 -0.8977 26 1 -0.3633 -1.0276 0.0156 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8453 3.2064 1.2212 30 1 0.3457 2.2633 1.0471 31 1 1.3313 2.0197 3.3228 32 1 1.2922 0.4683 2.4510 33 1 2.8201 1.3700 2.5948 34 1 3.9297 2.4720 0.1047 35 1 3.8499 0.9816 1.0741 36 1 5.2633 0.6403 -0.9248 37 1 3.7955 -0.3627 -1.0204 38 1 4.2636 2.3194 -2.4038 39 1 4.1548 0.7218 -3.1868 40 1 1.5306 -1.7083 -4.0576 41 1 3.1254 -1.7879 -4.8441 42 1 2.9975 -1.2912 -3.1397 43 1 1.6830 -0.7576 -8.8768 44 1 0.5642 2.0392 -1.4562 45 1 1.9238 3.1779 -1.2763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598216188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = -51.393619 kcal Electronic energy + Delta-G solvation = -22508.269187 eV Core-core repulsion = 19525.170007 eV Total energy + Delta-G solvation = -2983.099180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35717 -38.02275 -34.98739 -33.78898 -31.94568 -31.28342 -30.95703 -29.11203 -25.54423 -25.12893 -24.17705 -23.38512 -22.11988 -21.50729 -18.47310 -17.78853 -16.93992 -16.10415 -15.58281 -15.28844 -15.15341 -14.50522 -14.28392 -14.07163 -13.95028 -13.18946 -13.04204 -12.80920 -12.66149 -12.45088 -12.17714 -12.13505 -11.93635 -11.70123 -11.54190 -11.35120 -11.23867 -11.06431 -10.91622 -10.66003 -10.54173 -10.29675 -10.25962 -10.09398 -10.04487 -9.62553 -9.07078 -8.60997 -8.54197 -8.06215 -6.04430 -4.03926 3.24401 3.30039 3.36502 3.56687 3.62499 4.38561 4.63707 4.68088 4.79311 5.03636 5.17086 5.21934 5.23394 5.25943 5.39899 5.44787 5.52685 5.59710 5.61337 5.75285 5.78497 5.84319 5.86091 5.93894 5.94140 5.97479 6.00966 6.06278 6.17321 6.22361 6.23494 6.27967 6.33729 6.40276 6.49750 6.52134 6.61036 6.70745 7.09224 7.19106 7.58801 8.08415 8.55735 9.10889 9.15021 9.54818 11.08776 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030982 B = 0.005799 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.541990 B = 4827.605718 C = 5140.217288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.071 4.071 4 C -0.113 4.113 5 C -0.153 4.153 6 C -0.107 4.107 7 C -0.138 4.138 8 C 0.106 3.894 9 N -0.624 5.624 10 C 0.534 3.466 11 O -0.533 6.533 12 C -0.004 4.004 13 H 0.046 0.954 14 C -0.141 4.141 15 C -0.502 4.502 16 H 0.089 0.911 17 C 0.071 3.929 18 N -0.896 5.896 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.268 1.268 23 C 0.120 3.880 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.092 0.908 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 2.282 19.916 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.210 4.210 6 C -0.144 4.144 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.359 5.359 10 C 0.324 3.676 11 O -0.408 6.408 12 C -0.025 4.025 13 H 0.063 0.937 14 C -0.199 4.199 15 C -0.541 4.541 16 H 0.107 0.893 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.223 1.223 22 H -0.193 1.193 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.768 2.333 19.632 20.594 hybrid contribution 1.007 -0.585 -0.081 1.167 sum 6.775 1.748 19.550 20.765 Atomic orbital electron populations 1.21908 0.95962 1.01456 1.02172 1.21561 0.96006 0.95433 1.01741 1.20942 0.95247 0.96190 0.94785 1.21538 1.01036 0.98599 0.93906 1.21855 1.01541 1.00752 0.96841 1.21603 0.94402 1.00286 0.98145 1.21994 1.00275 1.00375 0.95003 1.21716 0.81017 1.00660 0.98339 1.48240 1.06860 1.60313 1.20497 1.21238 0.87550 0.77549 0.81227 1.90562 1.15882 1.57634 1.76728 1.19315 0.97333 0.91943 0.93924 0.93651 1.22072 1.01544 0.97952 0.98321 1.20903 1.08917 1.33320 0.90913 0.89331 1.24966 0.96742 0.96062 0.95307 1.69884 1.38636 1.43788 1.01131 0.86917 0.84582 0.80654 0.76431 1.20507 1.22291 1.19304 1.21551 0.99028 0.94852 0.84869 0.92814 0.91709 0.93257 0.91439 0.92351 0.92176 0.91470 0.93223 0.92329 0.92639 0.92078 0.91809 0.91252 0.91130 0.92141 0.88994 0.92136 0.93483 0.94780 0.92581 0.89009 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.08 37.16 0.34 -1.71 16 2 C -0.11 -1.37 3.80 -26.73 -0.10 -1.47 16 3 C -0.07 -0.81 0.32 -154.39 -0.05 -0.86 16 4 C -0.11 -1.09 4.41 -26.73 -0.12 -1.21 16 5 C -0.15 -1.28 9.07 37.16 0.34 -0.95 16 6 C -0.11 -1.09 4.49 -26.69 -0.12 -1.21 16 7 C -0.14 -1.55 5.74 -26.61 -0.15 -1.71 16 8 C 0.11 1.49 6.09 -3.71 -0.02 1.47 16 9 N -0.62 -10.71 2.33 -172.71 -0.40 -11.12 16 10 C 0.53 11.91 6.81 -10.99 -0.07 11.84 16 11 O -0.53 -13.84 15.19 5.55 0.08 -13.76 16 12 C 0.00 -0.09 1.38 -92.93 -0.13 -0.21 16 13 H 0.05 1.03 5.43 -51.93 -0.28 0.75 16 14 C -0.14 -3.01 8.39 37.16 0.31 -2.70 16 15 C -0.50 -14.64 8.92 -34.44 -0.31 -14.95 16 16 H 0.09 2.94 7.23 -52.48 -0.38 2.57 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 18 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 19 Si 0.88 21.43 24.31 -169.99 -4.13 17.29 16 20 H -0.28 -6.57 6.92 56.52 0.39 -6.18 16 21 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -5.97 6.53 56.52 0.37 -5.60 16 23 C 0.12 1.77 4.97 -3.67 -0.02 1.75 16 24 H 0.05 0.59 5.96 -51.93 -0.31 0.28 16 25 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.00 6.13 -51.93 -0.32 0.68 16 28 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 31 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.51 6.16 -51.93 -0.32 0.19 16 33 H 0.05 0.44 6.42 -51.93 -0.33 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.85 6.46 -51.93 -0.34 0.52 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.40 5.20 -51.93 -0.27 1.13 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.05 1.02 3.45 -51.93 -0.18 0.84 16 42 H 0.03 0.60 7.77 -51.93 -0.40 0.19 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.09 1.55 5.27 -51.93 -0.27 1.27 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -32.32 320.43 -6.38 -38.69 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.33 Total: 1.09 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.20 Total: -9.96 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.37 Total: -38.19 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.13 Total: 17.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.32 -6.38 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598216188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.701 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds