Wall clock time and date at job start Mon Mar 30 2020 06:28:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.46998 * 2 1
4 4 C 1.53000 * 109.49532 * 54.77962 * 3 2 1
5 5 C 1.53003 * 109.46904 * 55.87795 * 4 3 2
6 6 C 1.53037 * 109.49598 * 174.84523 * 3 2 1
7 7 C 1.53044 * 109.53737 * 58.58678 * 6 3 2
8 8 C 1.53192 * 109.31208 * 61.36260 * 7 6 3
9 9 N 1.46925 * 108.77757 * 305.36586 * 8 7 6
10 10 C 1.34779 * 120.62734 * 233.62940 * 9 8 7
11 11 O 1.21287 * 119.99525 * 185.12021 * 10 9 8
12 12 C 1.50697 * 120.00276 * 5.12190 * 10 9 8
13 13 H 1.08999 * 109.47192 * 322.93856 * 12 10 9
14 14 C 1.52999 * 109.46885 * 82.93652 * 12 10 9
15 15 C 1.50693 * 109.47145 * 202.93672 * 12 10 9
16 16 H 1.08006 * 120.00014 * 0.02562 * 15 12 10
17 17 C 1.37884 * 120.00278 * 180.02562 * 15 12 10
18 18 N 1.31514 * 120.00220 * 180.02562 * 17 15 12
19 19 Si 1.86799 * 119.99594 * 359.97438 * 17 15 12
20 20 H 1.48504 * 109.47063 * 90.00258 * 19 17 15
21 21 H 1.48500 * 109.47156 * 210.00471 * 19 17 15
22 22 H 1.48502 * 109.47372 * 330.00526 * 19 17 15
23 23 C 1.46995 * 118.75493 * 53.60546 * 9 8 7
24 24 H 1.09000 * 109.47000 * 300.86587 * 1 2 3
25 25 H 1.09000 * 109.47295 * 60.87393 * 1 2 3
26 26 H 1.09006 * 109.47084 * 180.87126 * 1 2 3
27 27 H 1.08998 * 109.46620 * 239.99990 * 2 1 3
28 28 H 1.09000 * 109.46920 * 120.00272 * 2 1 3
29 29 H 1.09002 * 109.46450 * 175.87332 * 4 3 2
30 30 H 1.08999 * 109.47177 * 295.87305 * 4 3 2
31 31 H 1.09007 * 109.46619 * 178.11428 * 5 4 3
32 32 H 1.08999 * 109.46998 * 298.10804 * 5 4 3
33 33 H 1.08999 * 109.47611 * 58.11233 * 5 4 3
34 34 H 1.09003 * 109.46242 * 178.60727 * 6 3 2
35 35 H 1.08999 * 109.46125 * 298.56689 * 6 3 2
36 36 H 1.09004 * 109.49943 * 181.31428 * 7 6 3
37 37 H 1.09001 * 109.50172 * 301.37891 * 7 6 3
38 38 H 1.09006 * 109.58435 * 65.15361 * 8 7 6
39 39 H 1.08998 * 109.58825 * 185.57428 * 8 7 6
40 40 H 1.09003 * 109.47345 * 65.85073 * 14 12 10
41 41 H 1.09003 * 109.47393 * 185.84672 * 14 12 10
42 42 H 1.08994 * 109.47700 * 305.84631 * 14 12 10
43 43 H 0.97000 * 119.99598 * 180.02562 * 18 17 15
44 44 H 1.09003 * 109.62711 * 186.61930 * 23 9 8
45 45 H 1.09001 * 109.57843 * 66.17108 * 23 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4260 2.2012 1.1783
5 6 1.7400 1.4616 2.4803
6 6 3.5649 1.4452 0.1296
7 6 4.1785 0.6578 -1.0304
8 6 3.8046 1.3319 -2.3542
9 7 2.3428 1.4643 -2.4212
10 6 1.6580 0.9878 -3.4797
11 8 0.4645 1.1845 -3.5682
12 6 2.3752 0.2105 -4.5533
13 1 3.3642 0.6399 -4.7135
14 6 2.5174 -1.2491 -4.1173
15 6 1.5850 0.2773 -5.8346
16 1 0.6564 0.8280 -5.8684
17 6 2.0473 -0.3645 -6.9640
18 7 1.3579 -0.3058 -8.0825
19 14 3.6536 -1.3162 -6.9058
20 1 3.3811 -2.7240 -6.5195
21 1 4.2959 -1.2857 -8.2443
22 1 4.5607 -0.6957 -5.9072
23 6 1.6411 2.1258 -1.3118
24 1 -0.3633 0.5272 0.8821
25 1 -0.3634 0.5002 -0.8977
26 1 -0.3633 -1.0276 0.0156
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 1.8453 3.2064 1.2212
30 1 0.3457 2.2633 1.0471
31 1 1.3313 2.0197 3.3228
32 1 1.2922 0.4683 2.4510
33 1 2.8201 1.3700 2.5948
34 1 3.9297 2.4720 0.1047
35 1 3.8499 0.9816 1.0741
36 1 5.2633 0.6403 -0.9248
37 1 3.7955 -0.3627 -1.0204
38 1 4.2636 2.3194 -2.4038
39 1 4.1548 0.7218 -3.1868
40 1 1.5306 -1.7083 -4.0576
41 1 3.1254 -1.7879 -4.8441
42 1 2.9975 -1.2912 -3.1397
43 1 1.6830 -0.7576 -8.8768
44 1 0.5642 2.0392 -1.4562
45 1 1.9238 3.1779 -1.2763
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598216188.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:28:21
Heat of formation + Delta-G solvation = -72.273009 kcal
Electronic energy + Delta-G solvation = -22509.174585 eV
Core-core repulsion = 19525.170007 eV
Total energy + Delta-G solvation = -2984.004578 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.61816 -39.47205 -36.29511 -35.73072 -33.34475 -33.02137 -31.88111 -30.17983
-27.20022 -26.79802 -25.25121 -24.48028 -23.49868 -22.63821 -19.93626 -18.93165
-18.81979 -17.75742 -17.19509 -16.52155 -16.26000 -15.99154 -15.54570 -15.31219
-15.04733 -14.88885 -14.51372 -14.16928 -13.79676 -13.72008 -13.52396 -13.47426
-13.20484 -12.84164 -12.79992 -12.54336 -12.51445 -12.33477 -12.18173 -12.08072
-12.00905 -11.55866 -11.47901 -11.28262 -11.20475 -11.04187 -10.95630 -10.77422
-10.32036 -9.44232 -8.29189 -6.36710 1.31601 1.37477 1.49135 1.86865
2.20072 2.32847 3.04512 3.65719 3.77441 3.87348 3.99776 4.13864
4.21820 4.31654 4.35062 4.40613 4.52327 4.53670 4.57172 4.62420
4.68887 4.70146 4.77600 4.83717 4.88170 4.90056 4.94895 5.00643
5.06755 5.11303 5.20279 5.21107 5.33928 5.35458 5.38913 5.41175
5.42674 5.51789 5.59288 5.67828 5.79464 6.24004 6.56198 6.77700
7.24300 7.48409 8.88896
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.030982 B = 0.005799 C = 0.005446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 903.541990 B = 4827.605718 C = 5140.217288
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.107 4.107
3 C -0.063 4.063
4 C -0.110 4.110
5 C -0.149 4.149
6 C -0.103 4.103
7 C -0.132 4.132
8 C 0.094 3.906
9 N -0.611 5.611
10 C 0.528 3.472
11 O -0.589 6.589
12 C -0.004 4.004
13 H 0.067 0.933
14 C -0.134 4.134
15 C -0.519 4.519
16 H 0.022 0.978
17 C 0.008 3.992
18 N -0.952 5.952
19 Si 0.957 3.043
20 H -0.263 1.263
21 H -0.295 1.295
22 H -0.227 1.227
23 C 0.115 3.885
24 H 0.073 0.927
25 H 0.026 0.974
26 H 0.047 0.953
27 H 0.043 0.957
28 H 0.083 0.917
29 H 0.070 0.930
30 H 0.056 0.944
31 H 0.058 0.942
32 H 0.054 0.946
33 H 0.067 0.933
34 H 0.073 0.927
35 H 0.087 0.913
36 H 0.100 0.900
37 H 0.063 0.937
38 H 0.080 0.920
39 H 0.083 0.917
40 H 0.038 0.962
41 H 0.051 0.949
42 H 0.076 0.924
43 H 0.268 0.732
44 H 0.061 0.939
45 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.492 1.659 23.303 25.610
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.144 4.144
3 C -0.063 4.063
4 C -0.148 4.148
5 C -0.206 4.206
6 C -0.140 4.140
7 C -0.170 4.170
8 C -0.028 4.028
9 N -0.345 5.345
10 C 0.318 3.682
11 O -0.469 6.469
12 C -0.026 4.026
13 H 0.084 0.916
14 C -0.191 4.191
15 C -0.557 4.557
16 H 0.040 0.960
17 C -0.189 4.189
18 N -0.592 5.592
19 Si 0.781 3.219
20 H -0.189 1.189
21 H -0.223 1.223
22 H -0.150 1.150
23 C -0.008 4.008
24 H 0.091 0.909
25 H 0.045 0.955
26 H 0.066 0.934
27 H 0.062 0.938
28 H 0.101 0.899
29 H 0.089 0.911
30 H 0.074 0.926
31 H 0.077 0.923
32 H 0.073 0.927
33 H 0.086 0.914
34 H 0.091 0.909
35 H 0.105 0.895
36 H 0.118 0.882
37 H 0.082 0.918
38 H 0.099 0.901
39 H 0.102 0.898
40 H 0.057 0.943
41 H 0.069 0.931
42 H 0.094 0.906
43 H 0.077 0.923
44 H 0.079 0.921
45 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 9.850 1.733 23.088 25.161
hybrid contribution -0.373 -0.274 -1.130 1.221
sum 9.477 1.460 21.957 23.960
Atomic orbital electron populations
1.21868 0.97006 1.01118 1.01180 1.21550 0.95067 0.96179 1.01650
1.20900 0.96952 0.95246 0.93246 1.21519 1.00324 0.99146 0.93831
1.21829 1.02358 1.00390 0.96011 1.21620 0.92415 1.01207 0.98807
1.21985 1.02211 0.99607 0.93230 1.22076 0.78409 1.02204 1.00133
1.48192 1.08463 1.58472 1.19328 1.21063 0.86905 0.77866 0.82357
1.90541 1.18176 1.59989 1.78150 1.19241 0.97148 0.94195 0.91969
0.91580 1.21942 1.00942 0.95561 1.00649 1.21042 1.07503 1.32899
0.94291 0.95963 1.26028 1.01574 0.97057 0.94215 1.70079 1.41440
1.45398 1.02307 0.85740 0.79154 0.79452 0.77510 1.18878 1.22301
1.14979 1.21754 0.97313 0.95873 0.85834 0.90864 0.95486 0.93386
0.93832 0.89879 0.91125 0.92578 0.92267 0.92658 0.91435 0.90854
0.89461 0.88154 0.91794 0.90130 0.89823 0.94279 0.93073 0.90553
0.92333 0.92070 0.91380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.02 9.08 71.98 0.65 -3.37 16
2 C -0.11 -2.46 3.80 30.60 0.12 -2.35 16
3 C -0.06 -1.28 0.32 -52.11 -0.02 -1.30 16
4 C -0.11 -1.82 4.41 30.60 0.13 -1.69 16
5 C -0.15 -1.90 9.07 71.98 0.65 -1.25 16
6 C -0.10 -1.60 4.49 30.62 0.14 -1.47 16
7 C -0.13 -2.33 5.74 30.67 0.18 -2.16 16
8 C 0.09 2.32 6.09 86.36 0.53 2.85 16
9 N -0.61 -20.57 2.33 -818.72 -1.91 -22.47 16
10 C 0.53 24.34 6.81 87.66 0.60 24.93 16
11 O -0.59 -33.00 15.19 -3.05 -0.05 -33.05 16
12 C 0.00 -0.19 1.38 -12.29 -0.02 -0.21 16
13 H 0.07 2.87 5.43 -2.39 -0.01 2.86 16
14 C -0.13 -5.49 8.39 71.98 0.60 -4.89 16
15 C -0.52 -31.88 8.92 25.60 0.23 -31.65 16
16 H 0.02 1.61 7.23 -2.91 -0.02 1.59 16
17 C 0.01 0.46 5.45 84.66 0.46 0.92 16
18 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16
19 Si 0.96 43.46 24.31 68.60 1.67 45.13 16
20 H -0.26 -11.30 6.92 99.48 0.69 -10.61 16
21 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16
22 H -0.23 -8.77 6.53 99.48 0.65 -8.12 16
23 C 0.11 3.32 4.97 86.35 0.43 3.75 16
24 H 0.07 1.57 5.96 -2.39 -0.01 1.56 16
25 H 0.03 0.90 6.51 -2.39 -0.02 0.88 16
26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16
27 H 0.04 1.22 6.13 -2.39 -0.01 1.20 16
28 H 0.08 1.52 6.72 -2.39 -0.02 1.50 16
29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.06 1.05 6.58 -2.39 -0.02 1.04 16
31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
32 H 0.05 0.75 6.16 -2.39 -0.01 0.74 16
33 H 0.07 0.72 6.42 -2.39 -0.02 0.71 16
34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
35 H 0.09 1.04 6.44 -2.39 -0.02 1.03 16
36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16
37 H 0.06 1.25 6.46 -2.39 -0.02 1.24 16
38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16
39 H 0.08 2.23 5.20 -2.39 -0.01 2.21 16
40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
41 H 0.05 2.05 3.45 -2.39 -0.01 2.04 16
42 H 0.08 2.47 7.77 -2.39 -0.02 2.45 16
43 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16
44 H 0.06 2.18 5.27 -2.39 -0.01 2.17 16
45 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
Total: -1.00 -78.13 320.43 5.60 -72.53
By element:
Atomic # 1 Polarization: 16.52 SS G_CDS: 0.90 Total: 17.42 kcal
Atomic # 6 Polarization: -22.54 SS G_CDS: 4.68 Total: -17.86 kcal
Atomic # 7 Polarization: -82.57 SS G_CDS: -1.61 Total: -84.17 kcal
Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 1.67 Total: 45.13 kcal
Total: -78.13 5.60 -72.53 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598216188.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.260 kcal
(2) G-P(sol) polarization free energy of solvation -78.128 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds