Wall clock time and date at job start Mon Mar 30 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 C 1.53000 * 109.49532 * 54.77962 * 3 2 1 5 5 C 1.53003 * 109.46904 * 55.87795 * 4 3 2 6 6 C 1.53037 * 109.49598 * 174.84523 * 3 2 1 7 7 C 1.53044 * 109.53737 * 58.58678 * 6 3 2 8 8 C 1.53192 * 109.31208 * 61.36260 * 7 6 3 9 9 N 1.46925 * 108.77757 * 305.36586 * 8 7 6 10 10 C 1.34779 * 120.62734 * 233.62940 * 9 8 7 11 11 O 1.21287 * 119.99525 * 185.12021 * 10 9 8 12 12 C 1.50697 * 120.00276 * 5.12190 * 10 9 8 13 13 H 1.08999 * 109.47192 * 322.93856 * 12 10 9 14 14 C 1.52999 * 109.46885 * 82.93652 * 12 10 9 15 15 C 1.50693 * 109.47145 * 202.93672 * 12 10 9 16 16 H 1.08006 * 120.00014 * 0.02562 * 15 12 10 17 17 C 1.37884 * 120.00278 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00220 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 119.99594 * 359.97438 * 17 15 12 20 20 H 1.48504 * 109.47063 * 90.00258 * 19 17 15 21 21 H 1.48500 * 109.47156 * 210.00471 * 19 17 15 22 22 H 1.48502 * 109.47372 * 330.00526 * 19 17 15 23 23 C 1.46995 * 118.75493 * 53.60546 * 9 8 7 24 24 H 1.09000 * 109.47000 * 300.86587 * 1 2 3 25 25 H 1.09000 * 109.47295 * 60.87393 * 1 2 3 26 26 H 1.09006 * 109.47084 * 180.87126 * 1 2 3 27 27 H 1.08998 * 109.46620 * 239.99990 * 2 1 3 28 28 H 1.09000 * 109.46920 * 120.00272 * 2 1 3 29 29 H 1.09002 * 109.46450 * 175.87332 * 4 3 2 30 30 H 1.08999 * 109.47177 * 295.87305 * 4 3 2 31 31 H 1.09007 * 109.46619 * 178.11428 * 5 4 3 32 32 H 1.08999 * 109.46998 * 298.10804 * 5 4 3 33 33 H 1.08999 * 109.47611 * 58.11233 * 5 4 3 34 34 H 1.09003 * 109.46242 * 178.60727 * 6 3 2 35 35 H 1.08999 * 109.46125 * 298.56689 * 6 3 2 36 36 H 1.09004 * 109.49943 * 181.31428 * 7 6 3 37 37 H 1.09001 * 109.50172 * 301.37891 * 7 6 3 38 38 H 1.09006 * 109.58435 * 65.15361 * 8 7 6 39 39 H 1.08998 * 109.58825 * 185.57428 * 8 7 6 40 40 H 1.09003 * 109.47345 * 65.85073 * 14 12 10 41 41 H 1.09003 * 109.47393 * 185.84672 * 14 12 10 42 42 H 1.08994 * 109.47700 * 305.84631 * 14 12 10 43 43 H 0.97000 * 119.99598 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.62711 * 186.61930 * 23 9 8 45 45 H 1.09001 * 109.57843 * 66.17108 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4260 2.2012 1.1783 5 6 1.7400 1.4616 2.4803 6 6 3.5649 1.4452 0.1296 7 6 4.1785 0.6578 -1.0304 8 6 3.8046 1.3319 -2.3542 9 7 2.3428 1.4643 -2.4212 10 6 1.6580 0.9878 -3.4797 11 8 0.4645 1.1845 -3.5682 12 6 2.3752 0.2105 -4.5533 13 1 3.3642 0.6399 -4.7135 14 6 2.5174 -1.2491 -4.1173 15 6 1.5850 0.2773 -5.8346 16 1 0.6564 0.8280 -5.8684 17 6 2.0473 -0.3645 -6.9640 18 7 1.3579 -0.3058 -8.0825 19 14 3.6536 -1.3162 -6.9058 20 1 3.3811 -2.7240 -6.5195 21 1 4.2959 -1.2857 -8.2443 22 1 4.5607 -0.6957 -5.9072 23 6 1.6411 2.1258 -1.3118 24 1 -0.3633 0.5272 0.8821 25 1 -0.3634 0.5002 -0.8977 26 1 -0.3633 -1.0276 0.0156 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8453 3.2064 1.2212 30 1 0.3457 2.2633 1.0471 31 1 1.3313 2.0197 3.3228 32 1 1.2922 0.4683 2.4510 33 1 2.8201 1.3700 2.5948 34 1 3.9297 2.4720 0.1047 35 1 3.8499 0.9816 1.0741 36 1 5.2633 0.6403 -0.9248 37 1 3.7955 -0.3627 -1.0204 38 1 4.2636 2.3194 -2.4038 39 1 4.1548 0.7218 -3.1868 40 1 1.5306 -1.7083 -4.0576 41 1 3.1254 -1.7879 -4.8441 42 1 2.9975 -1.2912 -3.1397 43 1 1.6830 -0.7576 -8.8768 44 1 0.5642 2.0392 -1.4562 45 1 1.9238 3.1779 -1.2763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598216188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:21 Heat of formation + Delta-G solvation = -72.273009 kcal Electronic energy + Delta-G solvation = -22509.174585 eV Core-core repulsion = 19525.170007 eV Total energy + Delta-G solvation = -2984.004578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61816 -39.47205 -36.29511 -35.73072 -33.34475 -33.02137 -31.88111 -30.17983 -27.20022 -26.79802 -25.25121 -24.48028 -23.49868 -22.63821 -19.93626 -18.93165 -18.81979 -17.75742 -17.19509 -16.52155 -16.26000 -15.99154 -15.54570 -15.31219 -15.04733 -14.88885 -14.51372 -14.16928 -13.79676 -13.72008 -13.52396 -13.47426 -13.20484 -12.84164 -12.79992 -12.54336 -12.51445 -12.33477 -12.18173 -12.08072 -12.00905 -11.55866 -11.47901 -11.28262 -11.20475 -11.04187 -10.95630 -10.77422 -10.32036 -9.44232 -8.29189 -6.36710 1.31601 1.37477 1.49135 1.86865 2.20072 2.32847 3.04512 3.65719 3.77441 3.87348 3.99776 4.13864 4.21820 4.31654 4.35062 4.40613 4.52327 4.53670 4.57172 4.62420 4.68887 4.70146 4.77600 4.83717 4.88170 4.90056 4.94895 5.00643 5.06755 5.11303 5.20279 5.21107 5.33928 5.35458 5.38913 5.41175 5.42674 5.51789 5.59288 5.67828 5.79464 6.24004 6.56198 6.77700 7.24300 7.48409 8.88896 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030982 B = 0.005799 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.541990 B = 4827.605718 C = 5140.217288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.063 4.063 4 C -0.110 4.110 5 C -0.149 4.149 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.094 3.906 9 N -0.611 5.611 10 C 0.528 3.472 11 O -0.589 6.589 12 C -0.004 4.004 13 H 0.067 0.933 14 C -0.134 4.134 15 C -0.519 4.519 16 H 0.022 0.978 17 C 0.008 3.992 18 N -0.952 5.952 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.227 1.227 23 C 0.115 3.885 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.268 0.732 44 H 0.061 0.939 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 1.659 23.303 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.063 4.063 4 C -0.148 4.148 5 C -0.206 4.206 6 C -0.140 4.140 7 C -0.170 4.170 8 C -0.028 4.028 9 N -0.345 5.345 10 C 0.318 3.682 11 O -0.469 6.469 12 C -0.026 4.026 13 H 0.084 0.916 14 C -0.191 4.191 15 C -0.557 4.557 16 H 0.040 0.960 17 C -0.189 4.189 18 N -0.592 5.592 19 Si 0.781 3.219 20 H -0.189 1.189 21 H -0.223 1.223 22 H -0.150 1.150 23 C -0.008 4.008 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.850 1.733 23.088 25.161 hybrid contribution -0.373 -0.274 -1.130 1.221 sum 9.477 1.460 21.957 23.960 Atomic orbital electron populations 1.21868 0.97006 1.01118 1.01180 1.21550 0.95067 0.96179 1.01650 1.20900 0.96952 0.95246 0.93246 1.21519 1.00324 0.99146 0.93831 1.21829 1.02358 1.00390 0.96011 1.21620 0.92415 1.01207 0.98807 1.21985 1.02211 0.99607 0.93230 1.22076 0.78409 1.02204 1.00133 1.48192 1.08463 1.58472 1.19328 1.21063 0.86905 0.77866 0.82357 1.90541 1.18176 1.59989 1.78150 1.19241 0.97148 0.94195 0.91969 0.91580 1.21942 1.00942 0.95561 1.00649 1.21042 1.07503 1.32899 0.94291 0.95963 1.26028 1.01574 0.97057 0.94215 1.70079 1.41440 1.45398 1.02307 0.85740 0.79154 0.79452 0.77510 1.18878 1.22301 1.14979 1.21754 0.97313 0.95873 0.85834 0.90864 0.95486 0.93386 0.93832 0.89879 0.91125 0.92578 0.92267 0.92658 0.91435 0.90854 0.89461 0.88154 0.91794 0.90130 0.89823 0.94279 0.93073 0.90553 0.92333 0.92070 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.08 71.98 0.65 -3.37 16 2 C -0.11 -2.46 3.80 30.60 0.12 -2.35 16 3 C -0.06 -1.28 0.32 -52.11 -0.02 -1.30 16 4 C -0.11 -1.82 4.41 30.60 0.13 -1.69 16 5 C -0.15 -1.90 9.07 71.98 0.65 -1.25 16 6 C -0.10 -1.60 4.49 30.62 0.14 -1.47 16 7 C -0.13 -2.33 5.74 30.67 0.18 -2.16 16 8 C 0.09 2.32 6.09 86.36 0.53 2.85 16 9 N -0.61 -20.57 2.33 -818.72 -1.91 -22.47 16 10 C 0.53 24.34 6.81 87.66 0.60 24.93 16 11 O -0.59 -33.00 15.19 -3.05 -0.05 -33.05 16 12 C 0.00 -0.19 1.38 -12.29 -0.02 -0.21 16 13 H 0.07 2.87 5.43 -2.39 -0.01 2.86 16 14 C -0.13 -5.49 8.39 71.98 0.60 -4.89 16 15 C -0.52 -31.88 8.92 25.60 0.23 -31.65 16 16 H 0.02 1.61 7.23 -2.91 -0.02 1.59 16 17 C 0.01 0.46 5.45 84.66 0.46 0.92 16 18 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 19 Si 0.96 43.46 24.31 68.60 1.67 45.13 16 20 H -0.26 -11.30 6.92 99.48 0.69 -10.61 16 21 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.23 -8.77 6.53 99.48 0.65 -8.12 16 23 C 0.11 3.32 4.97 86.35 0.43 3.75 16 24 H 0.07 1.57 5.96 -2.39 -0.01 1.56 16 25 H 0.03 0.90 6.51 -2.39 -0.02 0.88 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.04 1.22 6.13 -2.39 -0.01 1.20 16 28 H 0.08 1.52 6.72 -2.39 -0.02 1.50 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.05 6.58 -2.39 -0.02 1.04 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.75 6.16 -2.39 -0.01 0.74 16 33 H 0.07 0.72 6.42 -2.39 -0.02 0.71 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.04 6.44 -2.39 -0.02 1.03 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.25 6.46 -2.39 -0.02 1.24 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 2.23 5.20 -2.39 -0.01 2.21 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 2.05 3.45 -2.39 -0.01 2.04 16 42 H 0.08 2.47 7.77 -2.39 -0.02 2.45 16 43 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.06 2.18 5.27 -2.39 -0.01 2.17 16 45 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.13 320.43 5.60 -72.53 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.90 Total: 17.42 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.68 Total: -17.86 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.61 Total: -84.17 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.67 Total: 45.13 kcal Total: -78.13 5.60 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598216188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.260 kcal (2) G-P(sol) polarization free energy of solvation -78.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds