Wall clock time and date at job start Mon Mar 30 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46935 * 2 1 4 4 C 1.52989 * 109.47622 * 59.99711 * 3 2 1 5 5 N 1.46504 * 109.46782 * 179.97438 * 3 2 1 6 6 C 1.34777 * 119.99832 * 63.93081 * 5 3 2 7 7 O 1.21276 * 120.00148 * 5.18614 * 6 5 3 8 8 C 1.50703 * 119.99759 * 185.19293 * 6 5 3 9 9 C 1.52991 * 109.47266 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47215 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47151 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46922 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00269 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46750 * 89.99749 * 16 14 12 18 18 H 1.48492 * 109.47307 * 210.00250 * 16 14 12 19 19 H 1.48499 * 109.46683 * 330.00415 * 16 14 12 20 20 C 1.52999 * 109.47086 * 299.99391 * 3 2 1 21 21 C 1.53002 * 117.51888 * 108.86474 * 20 3 2 22 22 C 1.52994 * 117.50230 * 177.49566 * 20 3 2 23 23 H 1.09000 * 109.47217 * 300.00405 * 1 2 3 24 24 H 1.09006 * 109.46668 * 60.00483 * 1 2 3 25 25 H 1.08993 * 109.46930 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47217 * 239.99595 * 2 1 3 27 27 H 1.08997 * 109.46847 * 119.99546 * 2 1 3 28 28 H 1.09000 * 109.47159 * 300.00042 * 4 3 2 29 29 H 1.09006 * 109.47257 * 59.99701 * 4 3 2 30 30 H 1.09006 * 109.47513 * 179.97438 * 4 3 2 31 31 H 0.96998 * 119.99908 * 243.92877 * 5 3 2 32 32 H 1.09003 * 109.47036 * 299.99621 * 8 6 5 33 33 H 1.09000 * 109.47167 * 59.99248 * 8 6 5 34 34 H 1.08993 * 109.47615 * 299.99899 * 9 8 6 35 35 H 1.09000 * 109.47359 * 59.99711 * 9 8 6 36 36 H 1.09003 * 109.47161 * 300.00013 * 10 9 8 37 37 H 1.08993 * 109.47390 * 60.00279 * 10 9 8 38 38 H 1.09003 * 109.47038 * 300.00014 * 11 10 9 39 39 H 1.09002 * 109.46955 * 59.99936 * 11 10 9 40 40 H 0.97000 * 120.00054 * 180.02562 * 15 14 12 41 41 H 1.09006 * 115.54947 * 323.16730 * 20 3 2 42 42 H 1.08997 * 117.50281 * 214.97152 * 21 20 3 43 43 H 1.09008 * 117.49615 * 359.97438 * 21 20 3 44 44 H 1.09001 * 117.49741 * 359.97438 * 22 20 3 45 45 H 1.08998 * 117.50273 * 144.99599 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2491 5 7 3.5051 1.4425 0.0006 6 6 4.1794 0.9294 -1.0475 7 8 3.5771 0.5539 -2.0309 8 6 5.6817 0.8220 -0.9973 9 6 6.1932 0.2104 -2.3030 10 6 7.7186 0.1020 -2.2523 11 6 8.2302 -0.5092 -3.5584 12 6 9.7326 -0.6153 -3.5086 13 1 10.2689 -0.2807 -2.6329 14 6 10.4225 -1.1405 -4.5807 15 7 9.7693 -1.5484 -5.6469 16 14 12.2849 -1.2714 -4.5195 17 1 12.6700 -2.5859 -3.9459 18 1 12.8351 -1.1504 -5.8934 19 1 12.8299 -0.1820 -3.6702 20 6 1.5301 2.1637 -1.2493 21 6 0.4529 3.2332 -1.0580 22 6 1.8853 3.6437 -1.4052 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.4401 2.1638 1.2491 29 1 1.8933 1.6500 2.1392 30 1 1.8938 3.1914 1.2493 31 1 3.9898 1.8118 0.7553 32 1 6.1127 1.8148 -0.8674 33 1 5.9729 0.1872 -0.1605 34 1 5.7623 -0.7823 -2.4326 35 1 5.9020 0.8448 -3.1401 36 1 8.1493 1.0949 -2.1230 37 1 8.0102 -0.5323 -1.4153 38 1 7.7995 -1.5021 -3.6881 39 1 7.9386 0.1255 -4.3952 40 1 10.2546 -1.9182 -6.4010 41 1 1.4839 1.5591 -2.1552 42 1 -0.3021 3.3323 -1.8379 43 1 0.1069 3.4229 -0.0419 44 1 2.4819 4.1037 -0.6174 45 1 2.0727 4.0128 -2.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598250117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:22 Heat of formation + Delta-G solvation = -46.415311 kcal Electronic energy + Delta-G solvation = -20585.717324 eV Core-core repulsion = 17602.834020 eV Total energy + Delta-G solvation = -2982.883304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49772 -38.13642 -34.96771 -34.64461 -32.92627 -32.45314 -29.82832 -28.97216 -26.00205 -24.91310 -22.60195 -22.56124 -22.28533 -20.33914 -19.90628 -18.82121 -16.83828 -16.45971 -16.14402 -15.87149 -15.47045 -14.99969 -14.43664 -14.02450 -13.82366 -13.61841 -13.23383 -12.73996 -12.53965 -12.41791 -12.24210 -11.92886 -11.67172 -11.63987 -11.54659 -11.51334 -11.29541 -10.95707 -10.81847 -10.49783 -10.47603 -10.41395 -10.36556 -10.24755 -9.57501 -9.50454 -9.15137 -9.01967 -8.93388 -8.28165 -5.93007 -3.95420 2.84584 3.09595 3.35456 3.41363 3.44690 3.83550 4.32750 4.50841 4.57034 4.69605 4.89114 4.93250 5.03378 5.11377 5.13953 5.27824 5.30825 5.40170 5.41822 5.44284 5.46964 5.58166 5.63692 5.73805 5.79851 5.90719 5.94102 5.97436 6.08158 6.14713 6.19220 6.24389 6.36095 6.53542 6.61156 6.88873 7.06929 7.23919 7.58916 7.76850 7.93386 8.08805 8.41572 8.50711 9.12392 9.68064 11.18338 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.002919 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.689875 B = 9588.958477 C = 9637.468710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.206 3.794 4 C -0.161 4.161 5 N -0.732 5.732 6 C 0.516 3.484 7 O -0.529 6.529 8 C -0.140 4.140 9 C -0.102 4.102 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.143 4.143 21 C -0.185 4.185 22 C -0.173 4.173 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 8.922 15.797 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.120 3.880 4 C -0.218 4.218 5 N -0.385 5.385 6 C 0.303 3.697 7 O -0.404 6.404 8 C -0.180 4.180 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.162 4.162 21 C -0.223 4.223 22 C -0.210 4.210 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.978 8.552 14.906 26.352 hybrid contribution 1.346 0.105 0.313 1.386 sum -18.632 8.657 15.219 25.568 Atomic orbital electron populations 1.21785 0.95245 1.01559 1.01958 1.21865 0.96229 0.95590 1.03164 1.19730 0.79756 0.94974 0.93527 1.22251 1.02518 1.00484 0.96574 1.46280 1.06171 1.63908 1.22104 1.20974 0.90493 0.76113 0.82090 1.90656 1.70360 1.47675 1.31710 1.21798 0.90742 1.03282 1.02177 1.21423 0.97141 1.00957 0.94438 1.21651 0.92061 1.00125 1.00971 1.19094 0.95346 0.95929 0.91339 1.21293 0.92398 1.40724 1.01405 0.92778 1.25046 0.98315 0.95655 0.95575 1.69979 1.35412 1.42380 1.05723 0.86613 0.85941 0.78368 0.77181 1.20719 1.21260 1.19925 1.22603 1.02382 0.91147 1.00058 1.23155 0.92266 1.04210 1.02652 1.22828 0.97894 0.97788 1.02522 0.92797 0.92145 0.92834 0.90143 0.92089 0.90263 0.91941 0.91958 0.76937 0.89440 0.89361 0.91893 0.91883 0.93555 0.93555 0.96622 0.96614 0.93064 0.86590 0.89109 0.88482 0.89212 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.32 37.16 0.35 -0.87 16 2 C -0.13 -1.32 4.97 -26.73 -0.13 -1.45 16 3 C 0.21 1.93 0.65 -131.82 -0.09 1.84 16 4 C -0.16 -1.06 6.86 37.15 0.25 -0.81 16 5 N -0.73 -7.33 5.02 -47.61 -0.24 -7.57 16 6 C 0.52 7.07 7.24 -10.98 -0.08 6.99 16 7 O -0.53 -9.19 12.82 5.56 0.07 -9.12 16 8 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 9 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 16 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 C -0.14 -1.51 2.81 -90.62 -0.25 -1.77 16 21 C -0.19 -1.54 9.49 -26.73 -0.25 -1.80 16 22 C -0.17 -1.70 9.80 -26.73 -0.26 -1.97 16 23 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16 24 H 0.06 0.52 7.11 -51.93 -0.37 0.15 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.07 6.64 -51.93 -0.35 0.72 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.47 5.14 -51.93 -0.27 0.20 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 7.02 -51.93 -0.36 0.02 16 31 H 0.40 2.92 8.48 -40.82 -0.35 2.57 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 1.58 7.20 -51.93 -0.37 1.20 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.66 5.87 -51.92 -0.30 0.36 16 44 H 0.09 0.81 7.45 -51.93 -0.39 0.43 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.94 351.18 -8.72 -41.65 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.12 Total: -0.41 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.43 Total: -19.86 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.50 Total: -34.63 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -8.72 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598250117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.760 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds