Wall clock time and date at job start Mon Mar 30 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46935 * 2 1 4 4 C 1.52989 * 109.47622 * 59.99711 * 3 2 1 5 5 N 1.46504 * 109.46782 * 179.97438 * 3 2 1 6 6 C 1.34777 * 119.99832 * 63.93081 * 5 3 2 7 7 O 1.21276 * 120.00148 * 5.18614 * 6 5 3 8 8 C 1.50703 * 119.99759 * 185.19293 * 6 5 3 9 9 C 1.52991 * 109.47266 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47215 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47151 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46922 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00037 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99946 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00269 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46750 * 89.99749 * 16 14 12 18 18 H 1.48492 * 109.47307 * 210.00250 * 16 14 12 19 19 H 1.48499 * 109.46683 * 330.00415 * 16 14 12 20 20 C 1.52999 * 109.47086 * 299.99391 * 3 2 1 21 21 C 1.53002 * 117.51888 * 108.86474 * 20 3 2 22 22 C 1.52994 * 117.50230 * 177.49566 * 20 3 2 23 23 H 1.09000 * 109.47217 * 300.00405 * 1 2 3 24 24 H 1.09006 * 109.46668 * 60.00483 * 1 2 3 25 25 H 1.08993 * 109.46930 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47217 * 239.99595 * 2 1 3 27 27 H 1.08997 * 109.46847 * 119.99546 * 2 1 3 28 28 H 1.09000 * 109.47159 * 300.00042 * 4 3 2 29 29 H 1.09006 * 109.47257 * 59.99701 * 4 3 2 30 30 H 1.09006 * 109.47513 * 179.97438 * 4 3 2 31 31 H 0.96998 * 119.99908 * 243.92877 * 5 3 2 32 32 H 1.09003 * 109.47036 * 299.99621 * 8 6 5 33 33 H 1.09000 * 109.47167 * 59.99248 * 8 6 5 34 34 H 1.08993 * 109.47615 * 299.99899 * 9 8 6 35 35 H 1.09000 * 109.47359 * 59.99711 * 9 8 6 36 36 H 1.09003 * 109.47161 * 300.00013 * 10 9 8 37 37 H 1.08993 * 109.47390 * 60.00279 * 10 9 8 38 38 H 1.09003 * 109.47038 * 300.00014 * 11 10 9 39 39 H 1.09002 * 109.46955 * 59.99936 * 11 10 9 40 40 H 0.97000 * 120.00054 * 180.02562 * 15 14 12 41 41 H 1.09006 * 115.54947 * 323.16730 * 20 3 2 42 42 H 1.08997 * 117.50281 * 214.97152 * 21 20 3 43 43 H 1.09008 * 117.49615 * 359.97438 * 21 20 3 44 44 H 1.09001 * 117.49741 * 359.97438 * 22 20 3 45 45 H 1.08998 * 117.50273 * 144.99599 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2491 5 7 3.5051 1.4425 0.0006 6 6 4.1794 0.9294 -1.0475 7 8 3.5771 0.5539 -2.0309 8 6 5.6817 0.8220 -0.9973 9 6 6.1932 0.2104 -2.3030 10 6 7.7186 0.1020 -2.2523 11 6 8.2302 -0.5092 -3.5584 12 6 9.7326 -0.6153 -3.5086 13 1 10.2689 -0.2807 -2.6329 14 6 10.4225 -1.1405 -4.5807 15 7 9.7693 -1.5484 -5.6469 16 14 12.2849 -1.2714 -4.5195 17 1 12.6700 -2.5859 -3.9459 18 1 12.8351 -1.1504 -5.8934 19 1 12.8299 -0.1820 -3.6702 20 6 1.5301 2.1637 -1.2493 21 6 0.4529 3.2332 -1.0580 22 6 1.8853 3.6437 -1.4052 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.4401 2.1638 1.2491 29 1 1.8933 1.6500 2.1392 30 1 1.8938 3.1914 1.2493 31 1 3.9898 1.8118 0.7553 32 1 6.1127 1.8148 -0.8674 33 1 5.9729 0.1872 -0.1605 34 1 5.7623 -0.7823 -2.4326 35 1 5.9020 0.8448 -3.1401 36 1 8.1493 1.0949 -2.1230 37 1 8.0102 -0.5323 -1.4153 38 1 7.7995 -1.5021 -3.6881 39 1 7.9386 0.1255 -4.3952 40 1 10.2546 -1.9182 -6.4010 41 1 1.4839 1.5591 -2.1552 42 1 -0.3021 3.3323 -1.8379 43 1 0.1069 3.4229 -0.0419 44 1 2.4819 4.1037 -0.6174 45 1 2.0727 4.0128 -2.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598250117.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:21 Heat of formation + Delta-G solvation = -66.360469 kcal Electronic energy + Delta-G solvation = -20586.582211 eV Core-core repulsion = 17602.834020 eV Total energy + Delta-G solvation = -2983.748191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40940 -39.11223 -36.60989 -35.60133 -34.60469 -33.69730 -31.43334 -29.78502 -27.55437 -25.97443 -24.15475 -23.35433 -23.15532 -21.88324 -21.25415 -19.66341 -18.41927 -17.87744 -17.22978 -16.79577 -16.63748 -16.49377 -15.78249 -15.41609 -14.93749 -14.56584 -14.36775 -14.13836 -13.68131 -13.55724 -13.39736 -13.18066 -13.00821 -12.82155 -12.69101 -12.38117 -12.33489 -12.21818 -12.15364 -12.10833 -11.98395 -11.64790 -11.38310 -11.33615 -11.20690 -11.09150 -11.03023 -10.55779 -10.39112 -9.92784 -8.19305 -6.31785 1.39688 1.42284 1.53394 1.78298 2.23364 2.41653 3.05195 3.13223 3.58252 3.85234 3.93814 4.03448 4.10253 4.14838 4.17468 4.25205 4.40905 4.52205 4.58542 4.65184 4.69182 4.71643 4.79917 4.85710 4.87577 4.92716 5.04256 5.05513 5.14104 5.19898 5.23733 5.26509 5.31758 5.32667 5.36651 5.38491 5.48467 5.56165 5.72255 5.77234 5.87212 6.24629 6.72568 6.86668 7.37889 7.44450 8.93040 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039500 B = 0.002919 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.689875 B = 9588.958477 C = 9637.468710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.204 3.796 4 C -0.155 4.155 5 N -0.714 5.714 6 C 0.513 3.487 7 O -0.575 6.575 8 C -0.130 4.130 9 C -0.093 4.093 10 C -0.096 4.096 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.066 0.934 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.259 1.259 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.180 4.180 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.060 0.940 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.229 10.410 19.163 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.119 3.881 4 C -0.212 4.212 5 N -0.367 5.367 6 C 0.301 3.699 7 O -0.454 6.454 8 C -0.170 4.170 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.018 4.018 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.204 4.204 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.183 1.183 20 C -0.178 4.178 21 C -0.198 4.198 22 C -0.217 4.217 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.251 0.749 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.122 0.878 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.637 10.066 18.328 28.686 hybrid contribution 1.182 -0.384 -0.796 1.476 sum -18.455 9.683 17.533 27.235 Atomic orbital electron populations 1.21756 0.93755 1.01875 1.02684 1.21833 0.97619 0.95928 1.01430 1.19859 0.79004 0.94708 0.94560 1.22239 1.03239 1.00728 0.95021 1.46121 1.06779 1.62349 1.21408 1.21015 0.90633 0.75975 0.82304 1.90664 1.71158 1.49888 1.33726 1.21673 0.90730 1.04761 0.99841 1.21205 0.95303 0.99849 0.96762 1.21451 0.93643 1.00398 0.97820 1.19051 0.95079 0.94040 0.93610 1.21760 0.93443 1.40829 1.01999 0.91569 1.26113 1.04357 0.94981 0.94994 1.70139 1.37895 1.43207 1.06644 0.85367 0.78627 0.79052 0.77514 1.19655 1.20894 1.18270 1.22436 1.04893 0.91235 0.99285 1.23246 0.91314 1.01219 1.04058 1.22866 0.99609 0.97037 1.02231 0.90321 0.93006 0.92852 0.94268 0.91312 0.89040 0.90435 0.90849 0.74901 0.86827 0.86773 0.94075 0.94114 0.92180 0.92146 0.99808 0.99817 0.92837 0.90768 0.89024 0.85898 0.87814 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.32 71.99 0.67 -1.54 16 2 C -0.13 -2.58 4.97 30.60 0.15 -2.43 16 3 C 0.20 3.53 0.65 3.60 0.00 3.53 16 4 C -0.16 -1.45 6.86 71.98 0.49 -0.95 16 5 N -0.71 -13.09 5.02 -422.93 -2.12 -15.22 16 6 C 0.51 13.99 7.24 87.66 0.63 14.62 16 7 O -0.58 -21.24 12.82 -3.02 -0.04 -21.28 16 8 C -0.13 -3.34 5.70 29.85 0.17 -3.17 16 9 C -0.09 -3.48 4.50 30.59 0.14 -3.34 16 10 C -0.10 -4.02 5.15 30.60 0.16 -3.86 16 11 C 0.02 1.09 4.97 29.85 0.15 1.23 16 12 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 14 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 15 N -0.94 -59.86 13.29 21.45 0.28 -59.57 16 16 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C -0.16 -3.36 2.81 -10.80 -0.03 -3.39 16 21 C -0.16 -2.40 9.49 30.59 0.29 -2.11 16 22 C -0.18 -3.39 9.80 30.59 0.30 -3.09 16 23 H 0.08 0.82 6.43 -2.39 -0.02 0.81 16 24 H 0.05 0.89 7.11 -2.38 -0.02 0.87 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.04 1.11 6.64 -2.39 -0.02 1.09 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 0.67 5.14 -2.39 -0.01 0.66 16 29 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.07 0.57 7.02 -2.38 -0.02 0.55 16 31 H 0.41 4.72 8.48 -92.71 -0.79 3.94 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.67 16 35 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.07 2.21 7.20 -2.38 -0.02 2.19 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.12 1.21 5.87 -2.38 -0.01 1.19 16 44 H 0.10 1.64 7.45 -2.39 -0.02 1.62 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.92 351.18 4.13 -71.79 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.16 Total: 13.18 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 3.82 Total: -36.21 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -1.84 Total: -74.79 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.92 4.13 -71.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598250117.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.425 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds